PRGDB00044775 (At5g11250)

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At5g11250
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 108740458 (DQ528235)
Gene Class Unknown
Domain Type LRR, LRR, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana ecotype SQ-1 disease resistance protein (At5g11250) gene, partial cds.

DNA Sequence

TGTAAACTTGAAGGAGCTTCCTGATCTCTCAACTGCCATTAATCTCCGAAAGTTGATTCTTTCTAATTGCTCCAGTCTGATCAAACTCCCTTCTTGTATTGGGAATGCCACCAATCTCGAGGATTTAGATCTTAATGGATGCTCAAGTCTTGTGGAGCTTCCCTCTTTTGGGGATGCCTTTAACCTTCAAAAATTGCTTCTTCGCTATTGCTCAAATCTGGTGGAGCTCCCCTCTTCTATNGGGAATGCCATTAATCTTCGGGAAGTGGATCTTTATTATTGCTCGAGTCTGATCAGACTTCCCTCCTCTATTGGGAATGCCATTAATCTTTTGATTTTAGATCTTAACGGATGCTCAAATCTATTGGAGCTCCCATCCTCCATTGGGAATGCCATTAATCTCCAAAAACTGGATCTTCGCAGATGCGCAAAGCTATTAGAGCTCCCGTCTTCTATTGGGAATGCCATTAATCTCCAAAACCTGCTTCTTGACGATTGCTCAAGTCTGTTGGAGCTCCCCTCGTCTATTGGGAATGCCACTAATTTAGTGTACATGAACCTTAGTAATTGCTCAAATCTGGTGGAGCTTCCTCTTTCTATAGGAAACCTTCAGAAGTTGCAGGAATTGATTTTAAAAGGATGCTCTAAGCTAGAGGATCTTCCCACCAACATCAACTTGGAATCTTTGGACATACTTGTGCTCAATGATTGCTCCATGTTGAAAAGGTTTCCTGAGATCTCTACAAACGTTAGAGCTCTCTATCTCTGTGGAACCGCAATAGAAGAAGTGCCTCTCTCGATCAGGTCATGGCCCCGTCTTGATGAATTGCTGATGTCATACTTTGATAATCTAGTGGAATTCCCTCATGTTCTTGACATCATCACAAATCTGGACTTGAGCGGTAAAGAAATACAAGAGGTTCCTCCACTGATCAAGAGAATATCTCGTCTTCAGACACTCATACTCAAGGGGTACAGAAAGGTGGTATCACTCCCACAGATTCCAGATTCTTTAAAATGGATTGATGCTGAAGATTGTGAGTCCTTGGAGAGACTAGATTGCTCCTTTCACAATCCAGAGATTACTCTCTTCTTTGGTAAGTGCTTTAAACTTAATCAAGAAGCAAGAGACCTAATCATCCAGACACCGACTAGACAAGCAGTCTTACCTGGTAGAGAGGT


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Arabidopsis thaliana].

VNLKELPDLSTAINLRKLILSNCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAFNLQKLLLRYCSNLVELPSSXGNAINLREVDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPTNINLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLSGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEITLFFGKCFKLNQEARDLIIQTPTRQAVLPGREV


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
2-394 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

NLKELPDLSTAINLRKLILSNCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAFNLQKLLLRYCSNLVELPSSXGNAINLREVDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPTNINLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLSGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEITLFFGKCFKLNQEARDLIIQTPTRQAVLPGREV

HMMPanther: PTHR23155:SF292
2-394 PTHR23155:SF292,SUBFAMILY NOT NAMED

NLKELPDLSTAINLRKLILSNCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAFNLQKLLLRYCSNLVELPSSXGNAINLREVDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPTNINLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLSGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEITLFFGKCFKLNQEARDLIIQTPTRQAVLPGREV

superfamily: SSF52058
2-347 SSF52058,LRR

NLKELPDLSTAINLRKLILSNCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAFNLQKLLLRYCSNLVELPSSXGNAINLREVDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPTNINLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLSGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCE

Gene3D: G3DSA:3.80.10.10
5-183 G3DSA:3.80.10.10

ELPDLSTAINLRKLILSNCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAFNLQKLLLRYCSNLVELPSSXGNAINLREVDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNLV

HMMPfam: PF13504
14-30 LRR_7,Leucine rich repeat

NLRKLILSNCSSLIKLP

HMMPfam: PF13504
37-54 LRR_7,Leucine rich repeat

TNLEDLDLNGCSSLVELP

HMMPfam: PF00560
IPR001611
109-130 LRR_1
Leucine-rich repeat

NLLILDLNGCSNLLELPSSIGN

HMMPfam: PF00560
IPR001611
133-154 LRR_1
Leucine-rich repeat

NLQKLDLRRCAKLLELPSSIGN

HMMPfam: PF00560
IPR001611
181-203 LRR_1
Leucine-rich repeat

NLVYMNLSNCSNLVELPLSIGNL

Gene3D: G3DSA:3.80.10.10
184-355 G3DSA:3.80.10.10

YMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPTNINLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLSGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCS


List of References

Erica G Bakker, Christopher Toomajian, Martin Kreitman, Joy Bergelson
A genome-wide survey of R gene polymorphisms in Arabidopsis.
Plant Cell: 2006, 18(8);1803-18
PubMed:16798885 WorldCat.org DOI (P p)





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Analyses

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