PRGDB00044808 (At5g11250)

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At5g11250
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 108740392 (DQ528202)
Gene Class Unknown
Domain Type LRR, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana ecotype Hr-5 disease resistance protein (At5g11250) gene, partial cds.

DNA Sequence

ATGTTTGTGTTATTTGTCTGTACAGCCGCTTCAAAATCTCAGGCAGATGGATTTGAGTTATTCTGTAAACTTGAAGGAGCTTCCTGATCTCTCAACTGCCATTAATCTCCGAAAGTTGATTCTTTCTAATTGCTCCAGTCTGATCAAACTCCCTTCTTGTATTGGGAATGCCACCAATCTCGAGGATTTAGATCTTAATGGATGCTCAAGTCTTGTGGAGCTTCCCTCTTTTGGGGATGCCTTTAACCTTCAAAAATTGCTTCTTCGCTATTGCTCAAATCTGGTGGAGCTCCCCTCTTCTATTGGGAATGCCATTAATCTTCGGGAAGTGGATCTTTATTATTGCTCGAGTCTGATCAGACTTCCCTCCTCTATTGGGAATGCCATTAATCTTTTGATTTTAGATCTTAACGGATGCTCAAATCTATTGGAGCTCCCATCCTCCATTGGGAATGCCATTAATCTCCAAAAACTGGATCTTCGCAGATGCGCAAAGCTATTAGAGCTCCCGTCTTCTATTGGGAATGCCATTAATCTCCAAAACCTGCTTCTTGACGATTGCTCAAGTCTGTTGGAGCTCCCCTCGTCTATTGGGAATGCCACTAATTTAGTGTACATGAACCTTAGTAATTGCTCAAATCTGGTGGANCTTCCTCTTTCTATAGGAAACCTTCAGAAGTTGCAGGAATTGATTTTAAAAGGATGCTCTAAGCTAGAGGATCTTCCCACCAACATCAACTTGGAATCTTTGGACATACTTGTGCTCAATGATTGCTCCATGTTGAAAAGGTTTCCTGAGATCTCTACAAACGTTAGAGCTCTCTATCTCTGTGGAACCGCAATAGAAGAAGTGCCTCTCTCGATCAGGTCATGGCCCCGTCTTGATGAATTGCTGATGTCATACTTTGATAATCTAGTGGAATTCCCTCATGTTCTTGACATCATCACAAATCTGGACTTGAGCGGTAAAGAAATACAAGAGGTTCCTCCACTGATCAAGAGAATATCTCGTCTTCAGACACTCATACTCAAGGGGTACAGAAAGGTGGTATCACTCCCACAGATTCCAGATTCTTTAAAATGGATTGATGCTGAAGATTGTGAGTCCTTGGAGAGACTAGATTGCTCCTTTCACAATCCAGAGATTACTCTCTTCTTTGGTAAGTGCTTTAAACTTAATCAAGAAGCAAGAGACCTAATCATCCAGACACCGACTAGACAAGCAGTCTTACCTGGTAGAGAGGT


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Arabidopsis thaliana].

CLCYLSVQPLQNLRQMDLSYSVNLKELPDLSTAINLRKLILSNCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAFNLQKLLLRYCSNLVELPSSIGNAINLREVDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVXLPLSIGNLQKLQELILKGCSKLEDLPTNINLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLSGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEITLFFGKCFKLNQEARDLIIQTPTRQAVLPGREV


Domains

Domain Start-End Description Sequence

superfamily: SSF52058
6-242 SSF52058,LRR

SVQPLQNLRQMDLSYSVNLKELPDLSTAINLRKLILSNCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAFNLQKLLLRYCSNLVELPSSIGNAINLREVDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVXLPLSIGNLQKLQELILKGCSKLEDLP

HMMPanther: PTHR23155:SF292
10-415 PTHR23155:SF292,SUBFAMILY NOT NAMED

LQNLRQMDLSYSVNLKELPDLSTAINLRKLILSNCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAFNLQKLLLRYCSNLVELPSSIGNAINLREVDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVXLPLSIGNLQKLQELILKGCSKLEDLPTNINLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLSGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEITLFFGKCFKLNQEARDLIIQTPTRQAVLPGREV

Gene3D: G3DSA:3.80.10.10
10-203 G3DSA:3.80.10.10

LQNLRQMDLSYSVNLKELPDLSTAINLRKLILSNCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAFNLQKLLLRYCSNLVELPSSIGNAINLREVDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNL

HMMPanther: PTHR23155
10-415 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LQNLRQMDLSYSVNLKELPDLSTAINLRKLILSNCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAFNLQKLLLRYCSNLVELPSSIGNAINLREVDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVXLPLSIGNLQKLQELILKGCSKLEDLPTNINLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLSGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEITLFFGKCFKLNQEARDLIIQTPTRQAVLPGREV

HMMPfam: PF13504
35-51 LRR_7,Leucine rich repeat

NLRKLILSNCSSLIKLP

HMMPfam: PF13504
58-75 LRR_7,Leucine rich repeat

TNLEDLDLNGCSSLVELP

HMMPfam: PF00560
IPR001611
82-103 LRR_1
Leucine-rich repeat

NLQKLLLRYCSNLVELPSSIGN

HMMPfam: PF00560
IPR001611
130-151 LRR_1
Leucine-rich repeat

NLLILDLNGCSNLLELPSSIGN

HMMPfam: PF00560
IPR001611
154-175 LRR_1
Leucine-rich repeat

NLQKLDLRRCAKLLELPSSIGN

superfamily: SSF52058
178-392 SSF52058,LRR

NLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVXLPLSIGNLQKLQELILKGCSKLEDLPTNINLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLSGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEITLFFGKCFKL

HMMPfam: PF00560
IPR001611
202-224 LRR_1
Leucine-rich repeat

NLVYMNLSNCSNLVXLPLSIGNL

Gene3D: G3DSA:3.80.10.10
204-376 G3DSA:3.80.10.10

VYMNLSNCSNLVXLPLSIGNLQKLQELILKGCSKLEDLPTNINLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLSGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCS


List of References

Erica G Bakker, Christopher Toomajian, Martin Kreitman, Joy Bergelson
A genome-wide survey of R gene polymorphisms in Arabidopsis.
Plant Cell: 2006, 18(8);1803-18
PubMed:16798885 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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