PRGDB00044812 (At5g11250)
At5g11250 | |
---|---|
Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
GenBank | 108740384 (DQ528198) |
Gene Class | Unknown |
Domain Type | LRR, LRR |
Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGTTTGTGTTATTTGTCTGTACAGCCGCTTCATAATCTCAGGCAGATGGATTTGAGTTATTCTGTAAACTTGAAGGAGCTTCCTGATCTCTCAACTGCCATTAATCTCCGAAAGTTGATTCTTTCTAATTGCTTCAGTCTGATCAAACTCCCTTCTTGTATTGGGAATGCCACCAATCTCGAGGATTTAGATCTTAATGGATGCTCAAGTCTTGTGGAGCTTCCCTCTTTTGGGGATGCCATTAACCTTCAAAAATTGCTTCTTCGCTATTGCTCAAATCTGGTGGAGCTCCCCTCTTCTATTGGGAATGCCATTAATCTTCGGGAATTGGATCTTTATTATTGCTCGAGTCTGATCAGACTTCCCTCCTCTATTGGGAATGCCATTAATCTTTTGATTTTAGATCTTAACGGATGCTCAAATCTATTGGAGCTCCCATCCTCCATTGGGAATGCCATTAATCTCCAAAAACTGGATCTTCGCAGATGCGCAAAGCTATTAGAGCTCCCGTCTTTTATTGGGAATGCCATTAATCTCCAAAACCTGCTTCTTGACGATTGCTCAAGTCTGTTGGAGCTCCCCTCGTCTATTGGGAATGCCACTAATTTAGTGTACATGAACCTTAGTAATTGCTCAAATCTGGTGGAGCTTCCTCTTTCTATAGGAAACCTTCAGAAGTTGCAGGAATTGATTTTAAAAGGATGCTCTAAGCTAGAGGATCTTCCCATCAACATCAACTTGGAATCTTTGGACATACTTGTGCTCAATGATTGCTCCATGTTGAAAAGGTTTCCTGAGATCTCTACTAACGTTAGAGCTCTCTATCTCTGTGGAACCGCAATAGAAGAAGTGCCTCTCTCGATCAGGTCATGGCCCCGTCTTGATGAATTGCTGATGTCATACTTTGATAATCTAGTGGAATTCCCTCATGTTCTTGACATCATCACAAATCTGGACTTGAACGGTAAAGAAATACAAGAGGTTCCTCCACTGATCAAGAGAATATCTCGTCTTCAGACACTCATACTCAAGGGGTACAGAAAGGTGGTATCACTCCCACAGATTCCAGATTCTTTAAAATGGATTGATGCTGAAGATTGTGAGTCCTTGGAGAGACTAGATTGCTCCTTTCACAATCCAGAGATTACTCTCTTCTTTGGTAAGTGCTTTAAACTTAATCAAGAAGCAAGAGACCTAATCATCCAGACACCGACTAAACAAGCAGTCTTACCTGGTAGAGAGGT
Protein sequences
Name | Description | Sequence |
---|---|---|
disease resistance protein | disease resistance protein [Arabidopsis thaliana]. | CLCYLSVQPLHNLRQMDLSYSVNLKELPDLSTAINLRKLILSNCFSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAINLQKLLLRYCSNLVELPSSIGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSFIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPININLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLNGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEITLFFGKCFKLNQEARDLIIQTPTKQAVLPGREV |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
Gene3D: G3DSA:3.80.10.10 | 8-228 | G3DSA:3.80.10.10 | QPLHNLRQMDLSYSVNLKELPDLSTAINLRKLILSNCFSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAINLQKLLLRYCSNLVELPSSIGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSFIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQ |
HMMPanther: PTHR23155:SF292 | 10-415 | PTHR23155:SF292,SUBFAMILY NOT NAMED | LHNLRQMDLSYSVNLKELPDLSTAINLRKLILSNCFSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAINLQKLLLRYCSNLVELPSSIGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSFIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPININLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLNGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEITLFFGKCFKLNQEARDLIIQTPTKQAVLPGREV |
HMMPanther: PTHR23155 | 10-415 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LHNLRQMDLSYSVNLKELPDLSTAINLRKLILSNCFSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAINLQKLLLRYCSNLVELPSSIGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSFIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPININLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLNGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEITLFFGKCFKLNQEARDLIIQTPTKQAVLPGREV |
superfamily: SSF52058 | 11-265 | SSF52058,LRR | HNLRQMDLSYSVNLKELPDLSTAINLRKLILSNCFSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAINLQKLLLRYCSNLVELPSSIGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSFIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPININLESLDILVLNDCSMLKRFP |
HMMPfam: PF13504 | 58-75 | LRR_7,Leucine rich repeat | TNLEDLDLNGCSSLVELP |
HMMPfam: PF00560 IPR001611
|
82-103 | LRR_1 Leucine-rich repeat
|
NLQKLLLRYCSNLVELPSSIGN |
HMMPfam: PF00560 IPR001611
|
106-127 | LRR_1 Leucine-rich repeat
|
NLRELDLYYCSSLIRLPSSIGN |
HMMPfam: PF00560 IPR001611
|
130-151 | LRR_1 Leucine-rich repeat
|
NLLILDLNGCSNLLELPSSIGN |
HMMPfam: PF00560 IPR001611
|
154-172 | LRR_1 Leucine-rich repeat
|
NLQKLDLRRCAKLLELPSF |
HMMPfam: PF00560 IPR001611
|
202-224 | LRR_1 Leucine-rich repeat
|
NLVYMNLSNCSNLVELPLSIGNL |
superfamily: SSF52047 | 212-383 | SSF52047,LRR | SNLVELPLSIGNLQKLQELILKGCSKLEDLPININLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLNGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEIT |
Gene3D: G3DSA:3.80.10.10 | 229-376 | G3DSA:3.80.10.10 | ELILKGCSKLEDLPININLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLVEFPHVLDIITNLDLNGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCS |
List of References
Erica G Bakker, Christopher Toomajian, Martin Kreitman, Joy Bergelson
A genome-wide survey of R gene polymorphisms in Arabidopsis.
Plant Cell: 2006, 18(8);1803-18
PubMed:16798885
WorldCat.org
DOI
(P p)
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