PRGDB00044819 (At5g11250)

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At5g11250
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 108740369 (DQ528190)
Gene Class Unknown
Domain Type LRR, LRR, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana ecotype Eden-2 disease resistance protein (At5g11250) gene, partial cds.

DNA Sequence

ATGTTTGTGTTATTTGTCTGTACAGCCGCTTCAAAATCTCAGGCAGATGGATTTGAGTTATTCTGTAAACTTGAAGGAGCTTCCTGATCTCTCAACTGCCATTAATCTCCGAAAGTTGTTTCTTTCTGGTTGCTCCAGTCTGATCAAACTCCCTTCTTGTATTGGGAATGCCACCAATCTCGAGGATTTAGATCTTAATGGATGCTCAAGTCTTGTGGAGCTTCCCTCTTTTGGGGATGCCATTAACCTTCAAAAATTGCTTCTTCGCCATTGCTCAAATCTGGTGGAGCTCCCCTCTATTGGAAATGCCATTAATCTTCGGGAATTGGATCTTTATTATTGCTCGAGTCTGATCAGACTTCCCTCCTCTATTGGGAATGCCATTAATCTTTTGATTTTAGATCTTAACGGATGCTCAAATCTATTGGAGCTCCCATCCTCCATTGGGAATGCCATTAATCTCCAAAAACTGGATCTTCGCAGATGCGCAAAGCTATTAGAGCTCCCGTCTTCTATTGGGAATGCCATTAATCTCCAAAACCTGCTTCTTGACGATTGCTCAAGTCTGTTGAAGCTCCCCTCGTCTATTGGGAATGCTACTAATTTAGTGTACATGAACCTTAGTAATTGCTCAAATCTGGTGGAGCTCCCTCTTTCTATAGGAAACCTTCAGAAGTTGCAGGAATTGATTTTAAAAGGATGCTCTAAGCTAGAGGATCTTCCCATCAACATCAACTTGGAATCTTTGGACAGACTTGTGCTCAATGATTGCTCCATGTTGAAAAGGTTTCCTGAGATCTCTACAAACGTTAGAGCTCTCTATCTCTGTGGAACCGCAATAGAAGAAGTGCCTCTCTCGATCAGGTCATGGCCCCGTCTTGATGAATTGCTGATGTCATACTTTGATAATTTAATTGAATTTCCTCATGTTCTTGACATCATCACAAATCTGATCTTGAGCGATAAAGATTTACAAGAGGTTCCTCCACTGATCAAGAGAATATCTCGTCTTCAGACACTCATACTCAAGGGGTACAGAAAGGTGGTATCACTCCCACAGATTCCAGATTCTTTAAAATGGATTGATGCTGAAGATTGTGAGTCCTTGGAGAGACTAGATTGCTCCTTTCACAATCCAGAGATTACTCTCTTCTTTGGTAAGTGCTTTAAACTTAATCAAGAAGCAAGAGACCTAATCATCCAGACACCGACTAGACAAGCAGTCTTACCTGGTAGAGAGGT


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Arabidopsis thaliana].

CLCYLSVQPLQNLRQMDLSYSVNLKELPDLSTAINLRKLFLSGCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAINLQKLLLRHCSNLVELPSIGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLKLPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPININLESLDRLVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLIEFPHVLDIITNLILSDKDLQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEITLFFGKCFKLNQEARDLIIQTPTRQAVLPGREV


Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:3.80.10.10
8-241 G3DSA:3.80.10.10

QPLQNLRQMDLSYSVNLKELPDLSTAINLRKLFLSGCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAINLQKLLLRHCSNLVELPSIGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLKLPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLP

HMMPanther: PTHR23155
10-414 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LQNLRQMDLSYSVNLKELPDLSTAINLRKLFLSGCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAINLQKLLLRHCSNLVELPSIGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLKLPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPININLESLDRLVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLIEFPHVLDIITNLILSDKDLQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEITLFFGKCFKLNQEARDLIIQTPTRQAVLPGREV

HMMPanther: PTHR23155:SF292
10-414 PTHR23155:SF292,SUBFAMILY NOT NAMED

LQNLRQMDLSYSVNLKELPDLSTAINLRKLFLSGCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAINLQKLLLRHCSNLVELPSIGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLKLPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPININLESLDRLVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLIEFPHVLDIITNLILSDKDLQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEITLFFGKCFKLNQEARDLIIQTPTRQAVLPGREV

superfamily: SSF52058
11-264 SSF52058,LRR

QNLRQMDLSYSVNLKELPDLSTAINLRKLFLSGCSSLIKLPSCIGNATNLEDLDLNGCSSLVELPSFGDAINLQKLLLRHCSNLVELPSIGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLKLPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPININLESLDRLVLNDCSMLKRFP

HMMPfam: PF00560
IPR001611
35-54 LRR_1
Leucine-rich repeat

NLRKLFLSGCSSLIKLPSCI

HMMPfam: PF13504
58-75 LRR_7,Leucine rich repeat

TNLEDLDLNGCSSLVELP

HMMPfam: PF00560
IPR001611
82-102 LRR_1
Leucine-rich repeat

NLQKLLLRHCSNLVELPSIGN

HMMPfam: PF00560
IPR001611
105-126 LRR_1
Leucine-rich repeat

NLRELDLYYCSSLIRLPSSIGN

HMMPfam: PF00560
IPR001611
129-150 LRR_1
Leucine-rich repeat

NLLILDLNGCSNLLELPSSIGN

HMMPfam: PF00560
IPR001611
153-174 LRR_1
Leucine-rich repeat

NLQKLDLRRCAKLLELPSSIGN

HMMPfam: PF00560
IPR001611
201-223 LRR_1
Leucine-rich repeat

NLVYMNLSNCSNLVELPLSIGNL

Gene3D: G3DSA:3.80.10.10
267-375 G3DSA:3.80.10.10

STNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLIEFPHVLDIITNLILSDKDLQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCS

superfamily: SSF52058
268-391 SSF52058,LRR

TNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLIEFPHVLDIITNLILSDKDLQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERLDCSFHNPEITLFFGKCFKL


List of References

Erica G Bakker, Christopher Toomajian, Martin Kreitman, Joy Bergelson
A genome-wide survey of R gene polymorphisms in Arabidopsis.
Plant Cell: 2006, 18(8);1803-18
PubMed:16798885 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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