PRGDB00044937 (At4g14370)

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At4g14370
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 108740071 (DQ527813)
Gene Class Unknown
Domain Type LRR, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana ecotype SQ-8 disease resistance protein (At4g14370) gene, partial cds.

DNA Sequence

GGAGTTTCCACCTCATCTACGGTTACTTCGCTGGGAAGCATACCCAAGTAATGCTCTTCCTACTACATTTCATCCAGAATATCTTGTAGAACTTGATTTGAAGGAGAGCCAGCTTGAGAAGCTTTGGCAAGGAACACAGCCACTTACAAATCTCAAGAAAATGGATTTGACACGATCCTCTCATTTGAAGGAACTTCCAGATCTTTCAAATGCTACAAATCTCGAGAGGTTGGAGCTGAGTTATTGCAAGAGTTTGGTAGAGATTCCTTCCTCTTTTTCGGAACTTCGAAAACTAGAGACGTTGGTAATACACAACTGCACAAAGCTAGAAGTTGTTCCAACTCTCATCAACTTGGCATCTCTTGATTTCTTCAACATGCATGGTTGCTCCCAACTGAAAAAATTTCCAGGTATTTCTACACACATCTCAAGACTCGTTATAGATGACACACTGGTAGAAGAACTTCCTACATCAATAATACTTTGCACTCGGCTTAGAACTCTCATGATAAGCGGCAGTGGAAACTTTAAGACATTAACATATCTCCCTCTGAGTNTNNCGTATCTAGACCTAAGGTGTACGGGTNTTGAGAAGATTCCAAATTG


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Arabidopsis thaliana].

EFPPHLRLLRWEAYPSNALPTTFHPEYLVELDLKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASLDFFNMHGCSQLKKFPGISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTLTYLPLSXXYLDLRCTGXEKIPN

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF20
1-200 PTHR11017:SF20,SUBFAMILY NOT NAMED

EFPPHLRLLRWEAYPSNALPTTFHPEYLVELDLKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASLDFFNMHGCSQLKKFPGISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTLTYLPLSXXYLDLRCTGXEKIP

HMMPanther: PTHR11017
1-200 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

EFPPHLRLLRWEAYPSNALPTTFHPEYLVELDLKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASLDFFNMHGCSQLKKFPGISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTLTYLPLSXXYLDLRCTGXEKIP

superfamily: SSF52058
2-201 SSF52058,LRR

FPPHLRLLRWEAYPSNALPTTFHPEYLVELDLKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASLDFFNMHGCSQLKKFPGISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTLTYLPLSXXYLDLRCTGXEKIPN

Gene3D: G3DSA:3.80.10.10
3-190 G3DSA:3.80.10.10

PPHLRLLRWEAYPSNALPTTFHPEYLVELDLKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASLDFFNMHGCSQLKKFPGISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTLTYLPLSXXYLD

HMMPfam: PF07725
IPR011713
27-46 LRR_3
Leucine-rich repeat 3

YLVELDLKESQLEKLWQGTQ

HMMPfam: PF13855
72-129 LRR_8,Leucine rich repeat

TNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASLDFFNMHGC


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Analyses

Blast

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