PRGDB00044941 (At4g14370)

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At4g14370
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 108740062 (DQ527808)
Gene Class Unknown
Domain Type LRR, LRR, LRR, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana ecotype RMX-A180 disease resistance protein (At4g14370) gene, partial cds.

DNA Sequence

GGAGTTTCCACCTCATCTACGGTTGCTTCGGTGGGAAGCATACCCGAGTAATGCTCTTCCTACTACATTTCATCCAGAATATCTTGTAGAACTTGATATGAAGGAGAGCCAGCTTGAGAAGCTTTGGCAAGGAACACAGCCACTTACAAATCTCAAGAAAATGGATTTGACACGATCCTCTCATTTGAAGGAACTTCCAGATCTTTCAAATGCTACAAATCTCGAGAGGTTGGAGCTGAGTTATTGCAAGAGTTTGGTAGAGATTCCTTCCTCTTTTTCGGAACTTCGAAAACTAGAGACGTTGGTAATACACAACTGCACAAAGCTAGAAGTTGTTCCAACTCTCATCAACTTGGCATCTCCTGATTTCTTCAACATGCATGGTTGCTCCCAACTGAAAAAATTTCCAAATATTTCTACGCACATCTCAAGACTCGTTATAGATGACACATTGGTAGAAGAACTGCCTACATCAATAATACTTTGCACTCGGCTTAGGACTCTCATGATAAGCGGCAGTGGAAACTTTAAGACATTAACATATCTCCCTATG


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Arabidopsis thaliana].

EFPPHLRLLRWEAYPSNALPTTFHPEYLVELDMKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASPDFFNMHGCSQLKKFPNISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTLTYLPM


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-184 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

EFPPHLRLLRWEAYPSNALPTTFHPEYLVELDMKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASPDFFNMHGCSQLKKFPNISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTLTYLPM

HMMPanther: PTHR11017:SF20
1-184 PTHR11017:SF20,SUBFAMILY NOT NAMED

EFPPHLRLLRWEAYPSNALPTTFHPEYLVELDMKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASPDFFNMHGCSQLKKFPNISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTLTYLPM

superfamily: SSF52058
2-179 SSF52058,LRR

FPPHLRLLRWEAYPSNALPTTFHPEYLVELDMKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASPDFFNMHGCSQLKKFPNISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTL

Gene3D: G3DSA:3.80.10.10
3-173 G3DSA:3.80.10.10

PPHLRLLRWEAYPSNALPTTFHPEYLVELDMKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASPDFFNMHGCSQLKKFPNISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGS

HMMPfam: PF07725
IPR011713
27-46 LRR_3
Leucine-rich repeat 3

YLVELDMKESQLEKLWQGTQ

HMMPfam: PF00560
IPR001611
73-95 LRR_1
Leucine-rich repeat

NLERLELSYCKSLVEIPSSFSEL


List of References

Erica G Bakker, Christopher Toomajian, Martin Kreitman, Joy Bergelson
A genome-wide survey of R gene polymorphisms in Arabidopsis.
Plant Cell: 2006, 18(8);1803-18
PubMed:16798885 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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