PRGDB00044989 (At4g14370)

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At4g14370
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 108739965 (DQ527759)
Gene Class Unknown
Domain Type LRR, LRR, LRR, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana ecotype CIBC-5 disease resistance protein (At4g14370) gene, partial cds.

DNA Sequence

GGAGTTTCCACCTCATCTACGGTTGCTTCGGTGGGAAGCATACCCGAGTAATGCTCTTCCTACTACATTTCATCCAGAATATCTTGTAGAACTTGATATGAAGGAGAGCCAGCTTGAGAAGCTTTGGCAAGGAACACAGCCACTTACAAATCTCAAGAAAATGGATTTGACACGATCCTCTCATTTGAAGGAACTTCCAGATCTTTCAAATGCTACAAATCTCGAGAGGTTGGAGCTGAGTTATTGCAAGAGTTTGGTAGAGATTCCTTCCTCTTTTTCGGAACTTCGAAAACTAGAGACGTTGGTAATACACAACTGCACAAAGCTAGAAGTTGTTCCAACTCTCATCAACTTGGCATCTCCTGATTTCTTCAACATGCATGGTTGCTCCCAACTGAAAAAATTTCCAAATATTTCTACGCACATCTCAAGACTCGTTATAGATGACACATTGGTAGAAGAACTGCCTACATCAATAATACTTTGCACTCGGCTTAGGACTCTCATGATAAGCGGCAGTGGAAACTTTAAGACATTAACATATCTCCCTATGAGTCTAACGTATCTAGACCTAAGGTGTACGGGTATTGAGAAGATTCCAGATTG


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Arabidopsis thaliana].

EFPPHLRLLRWEAYPSNALPTTFHPEYLVELDMKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASPDFFNMHGCSQLKKFPNISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTLTYLPMSLTYLDLRCTGIEKIPD


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-201 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

EFPPHLRLLRWEAYPSNALPTTFHPEYLVELDMKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASPDFFNMHGCSQLKKFPNISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTLTYLPMSLTYLDLRCTGIEKIPD

HMMPanther: PTHR11017:SF20
1-201 PTHR11017:SF20,SUBFAMILY NOT NAMED

EFPPHLRLLRWEAYPSNALPTTFHPEYLVELDMKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASPDFFNMHGCSQLKKFPNISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTLTYLPMSLTYLDLRCTGIEKIPD

superfamily: SSF52058
2-201 SSF52058,LRR

FPPHLRLLRWEAYPSNALPTTFHPEYLVELDMKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASPDFFNMHGCSQLKKFPNISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTLTYLPMSLTYLDLRCTGIEKIPD

Gene3D: G3DSA:3.80.10.10
3-201 G3DSA:3.80.10.10

PPHLRLLRWEAYPSNALPTTFHPEYLVELDMKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASPDFFNMHGCSQLKKFPNISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTLTYLPMSLTYLDLRCTGIEKIPD

HMMPfam: PF07725
IPR011713
27-46 LRR_3
Leucine-rich repeat 3

YLVELDMKESQLEKLWQGTQ

HMMPfam: PF00560
IPR001611
73-95 LRR_1
Leucine-rich repeat

NLERLELSYCKSLVEIPSSFSEL

HMMPfam: PF00560
IPR001611
185-201 LRR_1
Leucine-rich repeat

SLTYLDLRCTGIEKIPD


List of References

Erica G Bakker, Christopher Toomajian, Martin Kreitman, Joy Bergelson
A genome-wide survey of R gene polymorphisms in Arabidopsis.
Plant Cell: 2006, 18(8);1803-18
PubMed:16798885 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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