PRGDB00045124 (At2g16870)
At2g16870 | |
---|---|
Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
GenBank | 108739623 (DQ527545) |
Gene Class | Unknown |
Domain Type | LRR, LRR, LRR |
Gene Species | Arabidopsis thaliana |
DNA Sequence
TCTTAAGAAGATGGATTTGTCAAGATCAGTTCATTTGAAGGAACTCCCAGATCTTTCAAATGCTACAAACCTGGAGAGACTGGAACTATGTGATTGCAGGGCTTTGGTAGAGCTTCCAAAGTCTATTGGGAATCTTCATAAACTAGAGAACTTAGTGATGGCTAACTGCATAAGTCTAGAAGTCATACCAACTCACATCAACTTGGCATCTCTTGAGCATATCACCATGACTGGATGCTCACGACTGAAAACATTTCCAGATTTTTCTACAAACATTGAGAGACTCCTTCTAATCGGCACATCGGTAGAAGAAGTGCCTGCATCAATCAGGCATTGGTCTTCTCTTTCGGATTTTTGTATAAAAAACAATGAAGATCTTAAGAGCTTAACATATTTTCCAGAGAAGGTAGAGCTGCTAGATCTAAGCTATACTGATATTGAGAAGATTCCAGATTGCATCAAAGGTTTTCATGGGCTAAAGTCTCTTGATGTAGCCGGCTGCAGAAAACTCACATCATTGCCTGAGCTCCCTATGTCACTCGG
Protein sequences
Name | Description | Sequence |
---|---|---|
disease resistance protein | disease resistance protein [Arabidopsis thaliana]. | LKKMDLSRSVHLKELPDLSNATNLERLELCDCRALVELPKSIGNLHKLENLVMANCISLEVIPTHINLASLEHITMTGCSRLKTFPDFSTNIERLLLIGTSVEEVPASIRHWSSLSDFCIKNNEDLKSLTYFPEKVELLDLSYTDIEKIPDCIKGFHGLKSLDVAGCRKLTSLPELPMSLG |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
superfamily: SSF52058 | 1-180 | SSF52058,LRR | LKKMDLSRSVHLKELPDLSNATNLERLELCDCRALVELPKSIGNLHKLENLVMANCISLEVIPTHINLASLEHITMTGCSRLKTFPDFSTNIERLLLIGTSVEEVPASIRHWSSLSDFCIKNNEDLKSLTYFPEKVELLDLSYTDIEKIPDCIKGFHGLKSLDVAGCRKLTSLPELPMSL |
HMMPanther: PTHR11017:SF20 | 1-180 | PTHR11017:SF20,SUBFAMILY NOT NAMED | LKKMDLSRSVHLKELPDLSNATNLERLELCDCRALVELPKSIGNLHKLENLVMANCISLEVIPTHINLASLEHITMTGCSRLKTFPDFSTNIERLLLIGTSVEEVPASIRHWSSLSDFCIKNNEDLKSLTYFPEKVELLDLSYTDIEKIPDCIKGFHGLKSLDVAGCRKLTSLPELPMSL |
Gene3D: G3DSA:3.80.10.10 | 1-178 | G3DSA:3.80.10.10 | LKKMDLSRSVHLKELPDLSNATNLERLELCDCRALVELPKSIGNLHKLENLVMANCISLEVIPTHINLASLEHITMTGCSRLKTFPDFSTNIERLLLIGTSVEEVPASIRHWSSLSDFCIKNNEDLKSLTYFPEKVELLDLSYTDIEKIPDCIKGFHGLKSLDVAGCRKLTSLPELPM |
HMMPanther: PTHR11017 | 1-180 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LKKMDLSRSVHLKELPDLSNATNLERLELCDCRALVELPKSIGNLHKLENLVMANCISLEVIPTHINLASLEHITMTGCSRLKTFPDFSTNIERLLLIGTSVEEVPASIRHWSSLSDFCIKNNEDLKSLTYFPEKVELLDLSYTDIEKIPDCIKGFHGLKSLDVAGCRKLTSLPELPMSL |
HMMPfam: PF00560 IPR001611
|
23-45 | LRR_1 Leucine-rich repeat
|
NLERLELCDCRALVELPKSIGNL |
HMMPfam: PF13504 | 158-174 | LRR_7,Leucine rich repeat | GLKSLDVAGCRKLTSLP |
List of References
Erica G Bakker, Christopher Toomajian, Martin Kreitman, Joy Bergelson
A genome-wide survey of R gene polymorphisms in Arabidopsis.
Plant Cell: 2006, 18(8);1803-18
PubMed:16798885
WorldCat.org
DOI
(P p)
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