PRGDB00045124 (At2g16870)

At2g16870
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	108739623 (DQ527545)
Gene Class	Unknown
Domain Type	LRR, LRR, LRR
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana ecotype Mt-0 disease resistance protein (At2g16870) gene, partial cds.

DNA Sequence

TCTTAAGAAGATGGATTTGTCAAGATCAGTTCATTTGAAGGAACTCCCAGATCTTTCAAATGCTACAAACCTGGAGAGACTGGAACTATGTGATTGCAGGGCTTTGGTAGAGCTTCCAAAGTCTATTGGGAATCTTCATAAACTAGAGAACTTAGTGATGGCTAACTGCATAAGTCTAGAAGTCATACCAACTCACATCAACTTGGCATCTCTTGAGCATATCACCATGACTGGATGCTCACGACTGAAAACATTTCCAGATTTTTCTACAAACATTGAGAGACTCCTTCTAATCGGCACATCGGTAGAAGAAGTGCCTGCATCAATCAGGCATTGGTCTTCTCTTTCGGATTTTTGTATAAAAAACAATGAAGATCTTAAGAGCTTAACATATTTTCCAGAGAAGGTAGAGCTGCTAGATCTAAGCTATACTGATATTGAGAAGATTCCAGATTGCATCAAAGGTTTTCATGGGCTAAAGTCTCTTGATGTAGCCGGCTGCAGAAAACTCACATCATTGCCTGAGCTCCCTATGTCACTCGG

Protein sequences

Name	Description	Sequence
disease resistance protein	disease resistance protein [Arabidopsis thaliana].	LKKMDLSRSVHLKELPDLSNATNLERLELCDCRALVELPKSIGNLHKLENLVMANCISLEVIPTHINLASLEHITMTGCSRLKTFPDFSTNIERLLLIGTSVEEVPASIRHWSSLSDFCIKNNEDLKSLTYFPEKVELLDLSYTDIEKIPDCIKGFHGLKSLDVAGCRKLTSLPELPMSLG

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52058	1-180	SSF52058,LRR	LKKMDLSRSVHLKELPDLSNATNLERLELCDCRALVELPKSIGNLHKLENLVMANCISLEVIPTHINLASLEHITMTGCSRLKTFPDFSTNIERLLLIGTSVEEVPASIRHWSSLSDFCIKNNEDLKSLTYFPEKVELLDLSYTDIEKIPDCIKGFHGLKSLDVAGCRKLTSLPELPMSL
HMMPanther: PTHR11017:SF20	1-180	PTHR11017:SF20,SUBFAMILY NOT NAMED	LKKMDLSRSVHLKELPDLSNATNLERLELCDCRALVELPKSIGNLHKLENLVMANCISLEVIPTHINLASLEHITMTGCSRLKTFPDFSTNIERLLLIGTSVEEVPASIRHWSSLSDFCIKNNEDLKSLTYFPEKVELLDLSYTDIEKIPDCIKGFHGLKSLDVAGCRKLTSLPELPMSL
Gene3D: G3DSA:3.80.10.10	1-178	G3DSA:3.80.10.10	LKKMDLSRSVHLKELPDLSNATNLERLELCDCRALVELPKSIGNLHKLENLVMANCISLEVIPTHINLASLEHITMTGCSRLKTFPDFSTNIERLLLIGTSVEEVPASIRHWSSLSDFCIKNNEDLKSLTYFPEKVELLDLSYTDIEKIPDCIKGFHGLKSLDVAGCRKLTSLPELPM
HMMPanther: PTHR11017	1-180	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	LKKMDLSRSVHLKELPDLSNATNLERLELCDCRALVELPKSIGNLHKLENLVMANCISLEVIPTHINLASLEHITMTGCSRLKTFPDFSTNIERLLLIGTSVEEVPASIRHWSSLSDFCIKNNEDLKSLTYFPEKVELLDLSYTDIEKIPDCIKGFHGLKSLDVAGCRKLTSLPELPMSL
HMMPfam: PF00560 IPR001611	23-45	LRR_1 Leucine-rich repeat	NLERLELCDCRALVELPKSIGNL
HMMPfam: PF13504	158-174	LRR_7,Leucine rich repeat	GLKSLDVAGCRKLTSLP

List of References

Erica G Bakker, Christopher Toomajian, Martin Kreitman, Joy Bergelson
A genome-wide survey of R gene polymorphisms in Arabidopsis.
Plant Cell: 2006, 18(8);1803-18
PubMed:16798885 WorldCat.org DOI (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show