PRGDB00045442 (At1g59620)

At1g59620
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	108738845 (DQ526954)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase, Ser-Thr Kinase, LRR
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana ecotype Kondara disease resistance protein (At1g59620) gene, partial cds.

DNA Sequence

CGAGGAGCTTGGTGGTTATAGGGGATTCGAAGTATGGTTTACGAGGCTACAGTTGATGAGGGTTTTAGATCTCCATGGAGTTGAGTTTGGAGGGGAGTTACCCTCTAGCATCGGACTGCTAATCCACTTGAGATATTTGAGTTTATATCGGGCAAAAGCATCTCATCTACCTTCGTCTATGCGGAATTTGAATATGCTGCTCTATTTAAACCTATGTGTACAAGAGAGTTGTTACATTTACATTCCCAATTTCTTGAAAGAGATGCTAGAGCTGAAATACCTCTCTCTCCCACTAAGAATGGATGATAAGGTAAAACTAGAATTGGGTAATCTAGTCAACCTGGAGAAGTTGGAAAATTTCTCAACAGAGCATGGGGGAGTGGGGGATCTTCAGTTTATGACCCGGCTTAGAGCCCTCTCTATCTATATCAGAGGCAGGTTGACTATGAAAACTCTATCTTCATCTCTAAGTAAACTGAGAGACTTGGAAAATCTTACAATCTGTTATTACCCGATGTATGCTCCCATGAGTGGTATAGAAGGATTAGTTTTGGACTGCGATCAGCTCAAGCATCTGAATTTGAGAATATATATGCCAAGGTTACCTGATGAACAACATTTTCCTTGGCATCTTCGAAACATATCTCTAGCTGAGTGTTGTTTGAAGGAGGATCCAATGCCGATTTTAGAGAAGCTGCTTCAATTAAACGAGGTCAGTTTATCTCATCAATCTTTCTGTGGGAAGAGAATGGTTTGCTCGGATGGTGGGTTTCCTCAATTGCAAAAGCTCGATTTGTGTGGACTGGAGGAGTGGGAAGAGTGGATAGTCGAAGAAGGCTCCATGCCACTTCTTCATAAGCTGACTATCCGCAACGATTCTAAATTAAAGGAGCTTCCTGATGGGTTGAAATTTATCACTTCCTTGAAAGAAGTGCATGTCATCTTAAATAATTGGGACTTTAAGAAGAAACTGTCCAGGGGAGGAGAAGATTACTACAAAGTCCAACACATTCCTCTTGTTCGATTTCT

Protein sequences

Name	Description	Sequence
disease resistance protein	disease resistance protein [Arabidopsis thaliana].	EELGGYRGFEVWFTRLQLMRVLDLHGVEFGGELPSSIGLLIHLRYLSLYRAKASHLPSSMRNLNMLLYLNLCVQESCYIYIPNFLKEMLELKYLSLPLRMDDKVKLELGNLVNLEKLENFSTEHGGVGDLQFMTRLRALSIYIRGRLTMKTLSSSLSKLRDLENLTICYYPMYAPMSGIEGLVLDCDQLKHLNLRIYMPRLPDEQHFPWHLRNISLAECCLKEDPMPILEKLLQLNEVSLSHQSFCGKRMVCSDGGFPQLQKLDLCGLEEWEEWIVEEGSMPLLHKLTIRNDSKLKELPDGLKFITSLKEVHVILNNWDFKKKLSRGGEDYYKVQHIPLVRFL

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52058	5-319	SSF52058,LRR	GYRGFEVWFTRLQLMRVLDLHGVEFGGELPSSIGLLIHLRYLSLYRAKASHLPSSMRNLNMLLYLNLCVQESCYIYIPNFLKEMLELKYLSLPLRMDDKVKLELGNLVNLEKLENFSTEHGGVGDLQFMTRLRALSIYIRGRLTMKTLSSSLSKLRDLENLTICYYPMYAPMSGIEGLVLDCDQLKHLNLRIYMPRLPDEQHFPWHLRNISLAECCLKEDPMPILEKLLQLNEVSLSHQSFCGKRMVCSDGGFPQLQKLDLCGLEEWEEWIVEEGSMPLLHKLTIRNDSKLKELPDGLKFITSLKEVHVILNNWD
HMMPanther: PTHR23155	10-322	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	EVWFTRLQLMRVLDLHGVEFGGELPSSIGLLIHLRYLSLYRAKASHLPSSMRNLNMLLYLNLCVQESCYIYIPNFLKEMLELKYLSLPLRMDDKVKLELGNLVNLEKLENFSTEHGGVGDLQFMTRLRALSIYIRGRLTMKTLSSSLSKLRDLENLTICYYPMYAPMSGIEGLVLDCDQLKHLNLRIYMPRLPDEQHFPWHLRNISLAECCLKEDPMPILEKLLQLNEVSLSHQSFCGKRMVCSDGGFPQLQKLDLCGLEEWEEWIVEEGSMPLLHKLTIRNDSKLKELPDGLKFITSLKEVHVILNNWDFKK
HMMPanther: PTHR23155:SF240	10-322	PTHR23155:SF240,CW9	EVWFTRLQLMRVLDLHGVEFGGELPSSIGLLIHLRYLSLYRAKASHLPSSMRNLNMLLYLNLCVQESCYIYIPNFLKEMLELKYLSLPLRMDDKVKLELGNLVNLEKLENFSTEHGGVGDLQFMTRLRALSIYIRGRLTMKTLSSSLSKLRDLENLTICYYPMYAPMSGIEGLVLDCDQLKHLNLRIYMPRLPDEQHFPWHLRNISLAECCLKEDPMPILEKLLQLNEVSLSHQSFCGKRMVCSDGGFPQLQKLDLCGLEEWEEWIVEEGSMPLLHKLTIRNDSKLKELPDGLKFITSLKEVHVILNNWDFKK
Gene3D: G3DSA:3.80.10.10	13-97	G3DSA:3.80.10.10	FTRLQLMRVLDLHGVEFGGELPSSIGLLIHLRYLSLYRAKASHLPSSMRNLNMLLYLNLCVQESCYIYIPNFLKEMLELKYLSLP
Gene3D: G3DSA:3.80.10.10	146-319	G3DSA:3.80.10.10	RLTMKTLSSSLSKLRDLENLTICYYPMYAPMSGIEGLVLDCDQLKHLNLRIYMPRLPDEQHFPWHLRNISLAECCLKEDPMPILEKLLQLNEVSLSHQSFCGKRMVCSDGGFPQLQKLDLCGLEEWEEWIVEEGSMPLLHKLTIRNDSKLKELPDGLKFITSLKEVHVILNNWD

List of References

Erica G Bakker, Christopher Toomajian, Martin Kreitman, Joy Bergelson
A genome-wide survey of R gene polymorphisms in Arabidopsis.
Plant Cell: 2006, 18(8);1803-18
PubMed:16798885 WorldCat.org DOI (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show