PRGDB00045465 (At1g53350)

At1g53350
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	108738760 (DQ526838)
Gene Class	CNL
Domain Type	LRR, NBS
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana ecotype Wa-1 disease resistance protein (At1g53350) gene, partial cds.

DNA Sequence

GCTTAGAGTGTTAGATCTTTCTTACGTACAGTTTGAAGGAGGGAAGTTACCATCCAGCATTGGAGATCTCATTCACTTGAGATTCTTGAGCTTATACGAGGCTGGAGTATCTCATCTACCTTCTTCTCTGGGGAATCTAAAGCTTCTGCTCTGTTTGAACTTAGGTGTTGCTGATCGGTTACTAGTTCATGTGCCAAATGTTTTGAAAGAGATGCAAGAACTGAGGTACCTTCGCTTACCTCGTTCAATGCCTGCTAAAACCAAGTTGGAATTAGGTGATCTAGTGAACTTAGAGTCGTTGACGAATTTCTCAACGAAACACGGTAGTGTGACGGACCTCCTCCGTATGACTAAGCTCACGGTTCTCAACGTGATTTTCAGTGGCGAGTGTACTTTCGAAACTCTATTGTTATCTCTTCGTGAGTTGAGAAATCTCGAGACGCTTAGTTTTCATGATTTCCAAAAAGTCAGCGTGGCAAATCATGGGGGAGAGCTCCTCGTTCTTGATTTTATTCATCTAAAGGATTTAACATTGTCAATGCATCTGCTAAGGTTTCCGGATCAATACCGATTCCCTCCTCACCTTGCCCACATATGGCTAATCGGATGCCGCATGGAGGAAGATCCAATGCCGATTCTAGAGAAGTTGCTTCATTTGAAATCGGTTTATCTTTCATCCGGTGCATTCTTGGGAAGGAGAATGGTGTGCTCGAAAGGCGGATTTCCTCAACTACTTGCTCTAAAAATGTCGTATAAAAAAGAGTTGGTAGAGTGGAGAGTAGAAGAAGGGTCGATGCCATGTCTTCGTACTCTGACTATAGACAATTGCAAGAAGTTGAAGCAACTTCCGGATGGGCTCAA

Protein sequences

Name	Description	Sequence
disease resistance protein	disease resistance protein [Arabidopsis thaliana].	LRVLDLSYVQFEGGKLPSSIGDLIHLRFLSLYEAGVSHLPSSLGNLKLLLCLNLGVADRLLVHVPNVLKEMQELRYLRLPRSMPAKTKLELGDLVNLESLTNFSTKHGSVTDLLRMTKLTVLNVIFSGECTFETLLLSLRELRNLETLSFHDFQKVSVANHGGELLVLDFIHLKDLTLSMHLLRFPDQYRFPPHLAHIWLIGCRMEEDPMPILEKLLHLKSVYLSSGAFLGRRMVCSKGGFPQLLALKMSYKKELVEWRVEEGSMPCLRTLTIDNCKKLKQLPDGL

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR23155	1-286	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	LRVLDLSYVQFEGGKLPSSIGDLIHLRFLSLYEAGVSHLPSSLGNLKLLLCLNLGVADRLLVHVPNVLKEMQELRYLRLPRSMPAKTKLELGDLVNLESLTNFSTKHGSVTDLLRMTKLTVLNVIFSGECTFETLLLSLRELRNLETLSFHDFQKVSVANHGGELLVLDFIHLKDLTLSMHLLRFPDQYRFPPHLAHIWLIGCRMEEDPMPILEKLLHLKSVYLSSGAFLGRRMVCSKGGFPQLLALKMSYKKELVEWRVEEGSMPCLRTLTIDNCKKLKQLPDGL
HMMPanther: PTHR23155:SF231	1-286	PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)	LRVLDLSYVQFEGGKLPSSIGDLIHLRFLSLYEAGVSHLPSSLGNLKLLLCLNLGVADRLLVHVPNVLKEMQELRYLRLPRSMPAKTKLELGDLVNLESLTNFSTKHGSVTDLLRMTKLTVLNVIFSGECTFETLLLSLRELRNLETLSFHDFQKVSVANHGGELLVLDFIHLKDLTLSMHLLRFPDQYRFPPHLAHIWLIGCRMEEDPMPILEKLLHLKSVYLSSGAFLGRRMVCSKGGFPQLLALKMSYKKELVEWRVEEGSMPCLRTLTIDNCKKLKQLPDGL
Gene3D: G3DSA:3.80.10.10	1-80	G3DSA:3.80.10.10	LRVLDLSYVQFEGGKLPSSIGDLIHLRFLSLYEAGVSHLPSSLGNLKLLLCLNLGVADRLLVHVPNVLKEMQELRYLRLP
superfamily: SSF52058	1-283	SSF52058,LRR	LRVLDLSYVQFEGGKLPSSIGDLIHLRFLSLYEAGVSHLPSSLGNLKLLLCLNLGVADRLLVHVPNVLKEMQELRYLRLPRSMPAKTKLELGDLVNLESLTNFSTKHGSVTDLLRMTKLTVLNVIFSGECTFETLLLSLRELRNLETLSFHDFQKVSVANHGGELLVLDFIHLKDLTLSMHLLRFPDQYRFPPHLAHIWLIGCRMEEDPMPILEKLLHLKSVYLSSGAFLGRRMVCSKGGFPQLLALKMSYKKELVEWRVEEGSMPCLRTLTIDNCKKLKQLP
Gene3D: G3DSA:3.80.10.10	129-284	G3DSA:3.80.10.10	ECTFETLLLSLRELRNLETLSFHDFQKVSVANHGGELLVLDFIHLKDLTLSMHLLRFPDQYRFPPHLAHIWLIGCRMEEDPMPILEKLLHLKSVYLSSGAFLGRRMVCSKGGFPQLLALKMSYKKELVEWRVEEGSMPCLRTLTIDNCKKLKQLPD

List of References

Erica G Bakker, Christopher Toomajian, Martin Kreitman, Joy Bergelson
A genome-wide survey of R gene polymorphisms in Arabidopsis.
Plant Cell: 2006, 18(8);1803-18
PubMed:16798885 WorldCat.org DOI (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show