PRGDB00046818 (disease resistance protein)

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disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 77696328 (DQ220671)
Gene Class TNL
Domain Type LRR, LRR, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana ecotype Yo-0 disease resistance protein (At5g18350) gene, partial cds.

DNA Sequence

TCTAAGGATCTGAAAGAGATTCCAGATCTTTCAAACTCTACTAATCTCGAGGAACTAGATCTCTCTAGCTGCTCAGGTTTGTTAGAGCTCACCGACTCTATTGGAAAAACCACTAATCTTAAGAGATTGAAACTTGCCGGTTGCTCTCTTTTGAAAAAGCTACCTTCCACTATCGGAGATGCCACGAATCTCCAAGTGTTGGAACTTTTCCATTGCGAAAGTTTGGAGGAACTCCCCGAATCTATTGGTAAGTTAACTAATCTCAAGGTATTGGAACTCATGCGTTGTTATATACTGGTGACTCTCCCCAACTCTATCAAGACACCTAAATTGCCGGTCTTGAGCATGAGCGAATGCGAAGATCTACAGGCGTTTCCAACCTACATCAACCTTGAGGATTGTACACAGTTGAAAATGTTTCCAGAAATTTCAACAAACGTTAAAGAACTCAATCTGAGAAATACTGCAATAGAGAACGTGCCATCTTCGATATGCTCTTGGTCTTGTCTTTTCAGATTGGATATGTCAGGGTGTAGAAACCTCAAGGAGTTCCCAAATGTTCCTGTCAGCATCGTAGAGTTGGACTTGAGCAAGACAGAGATAAAGGAAGTTCCTTCATGGATTGAGAATCTAGTCAACTTGCGTACTCTAACTATGGTAGGATGCGACATGCTGGATATTATATCTCCAAACATTTCTAAGTTGAAGAATCTTGAAGATCTTGAACTGACTACCGGCGGTGTTTCTGGGGATACTGCATCTTTTTATGCATTCGTTGAGTTCTCTGACCGGCATGATTGGACTTTAGAATCAGACTTTCAAGTTCACTACATTTTACCGATATGTCTACCCAAGATGGCAATATCATTACGCTTCTGGAGTTATGATTTCGAGACTATTCCAGATTGCATTAACTGTCTCCCCGGGCTTAGTGAGCTTGACGTTAGTGGATGCAGAAATCTCGTCTCACTCCCACAGCTTCCGGGTTCCCTTTTATCTCTAGATGCAAAGAACTGTGAAACTTTGGAGAGAATAAACGGCTCTTTTCAAAACCCAGAGATTTGTCTAAACTTTGCTAACTGCATCAACTTGAATCAAGAAGCGAGAAAGCTCATCCAGACATCAGCTTGCGAATATGCGATCTTACCTGGTGCAGAAGTTCCTGCACACTTCACTCACCAA


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Arabidopsis thaliana].

SKDLKEIPDLSNSTNLEELDLSSCSGLLELTDSIGKTTNLKRLKLAGCSLLKKLPSTIGDATNLQVLELFHCESLEELPESIGKLTNLKVLELMRCYILVTLPNSIKTPKLPVLSMSECEDLQAFPTYINLEDCTQLKMFPEISTNVKELNLRNTAIENVPSSICSWSCLFRLDMSGCRNLKEFPNVPVSIVELDLSKTEIKEVPSWIENLVNLRTLTMVGCDMLDIISPNISKLKNLEDLELTTGGVSGDTASFYAFVEFSDRHDWTLESDFQVHYILPICLPKMAISLRFWSYDFETIPDCINCLPGLSELDVSGCRNLVSLPQLPGSLLSLDAKNCETLERINGSFQNPEICLNFANCINLNQEARKLIQTSACEYAILPGAEVPAHFTHQ


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF300
3-387 PTHR23155:SF300

DLKEIPDLSNSTNLEELDLSSCSGLLELTDSIGKTTNLKRLKLAGCSLLKKLPSTIGDATNLQVLELFHCESLEELPESIGKLTNLKVLELMRCYILVTLPNSIKTPKLPVLSMSECEDLQAFPTYINLEDCTQLKMFPEISTNVKELNLRNTAIENVPSSICSWSCLFRLDMSGCRNLKEFPNVPVSIVELDLSKTEIKEVPSWIENLVNLRTLTMVGCDMLDIISPNISKLKNLEDLELTTGGVSGDTASFYAFVEFSDRHDWTLESDFQVHYILPICLPKMAISLRFWSYDFETIPDCINCLPGLSELDVSGCRNLVSLPQLPGSLLSLDAKNCETLERINGSFQNPEICLNFANCINLNQEARKLIQTSACEYAILPGAEV

HMMPanther: PTHR23155
3-387 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

DLKEIPDLSNSTNLEELDLSSCSGLLELTDSIGKTTNLKRLKLAGCSLLKKLPSTIGDATNLQVLELFHCESLEELPESIGKLTNLKVLELMRCYILVTLPNSIKTPKLPVLSMSECEDLQAFPTYINLEDCTQLKMFPEISTNVKELNLRNTAIENVPSSICSWSCLFRLDMSGCRNLKEFPNVPVSIVELDLSKTEIKEVPSWIENLVNLRTLTMVGCDMLDIISPNISKLKNLEDLELTTGGVSGDTASFYAFVEFSDRHDWTLESDFQVHYILPICLPKMAISLRFWSYDFETIPDCINCLPGLSELDVSGCRNLVSLPQLPGSLLSLDAKNCETLERINGSFQNPEICLNFANCINLNQEARKLIQTSACEYAILPGAEV

Gene3D: G3DSA:3.80.10.10
6-134 G3DSA:3.80.10.10

EIPDLSNSTNLEELDLSSCSGLLELTDSIGKTTNLKRLKLAGCSLLKKLPSTIGDATNLQVLELFHCESLEELPESIGKLTNLKVLELMRCYILVTLPNSIKTPKLPVLSMSECEDLQAFPTYINLEDC

superfamily: SSF52058
10-330 SSF52058,LRR

LSNSTNLEELDLSSCSGLLELTDSIGKTTNLKRLKLAGCSLLKKLPSTIGDATNLQVLELFHCESLEELPESIGKLTNLKVLELMRCYILVTLPNSIKTPKLPVLSMSECEDLQAFPTYINLEDCTQLKMFPEISTNVKELNLRNTAIENVPSSICSWSCLFRLDMSGCRNLKEFPNVPVSIVELDLSKTEIKEVPSWIENLVNLRTLTMVGCDMLDIISPNISKLKNLEDLELTTGGVSGDTASFYAFVEFSDRHDWTLESDFQVHYILPICLPKMAISLRFWSYDFETIPDCINCLPGLSELDVSGCRNLVSLPQLPGS

HMMPfam: PF00560
IPR001611
15-34 LRR_1
Leucine-rich repeat

NLEELDLSSCSGLLELTDSI

HMMPfam: PF13504
38-55 LRR_7,Leucine rich repeat

TNLKRLKLAGCSLLKKLP

HMMPfam: PF12799
62-98 LRR_4,Leucine Rich repeats (2 copies)

TNLQVLELFHCESLEELPESIGKLTNLKVLELMRCYI

Gene3D: G3DSA:3.80.10.10
135-249 G3DSA:3.80.10.10

TQLKMFPEISTNVKELNLRNTAIENVPSSICSWSCLFRLDMSGCRNLKEFPNVPVSIVELDLSKTEIKEVPSWIENLVNLRTLTMVGCDMLDIISPNISKLKNLEDLELTTGGVS

Gene3D: G3DSA:3.80.10.10
298-350 G3DSA:3.80.10.10

ETIPDCINCLPGLSELDVSGCRNLVSLPQLPGSLLSLDAKNCETLERINGSFQ

HMMPfam: PF00560
IPR001611
310-326 LRR_1
Leucine-rich repeat

LSELDVSGCRNLVSLPQ


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Analyses

Blast

Blast matches against Reference R-Genes. Show


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