PRGDB00046819 (disease resistance protein)

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disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 77696326 (DQ220670)
Gene Class TNL
Domain Type LRR, LRR, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana ecotype Up14 disease resistance protein (At5g18350) gene, partial cds.

DNA Sequence

TCTAAGGATCTGAAAGAGATTCCAGATCTTTCAAACTCTACTAATCTCGAGGAACTAGATCTCTCTAGCTGCTCAGGTTTGTTAGAGCTCACCGACTCTATTGGAAAAACCACTAATCTTAAGAGATTGAAACTTGCCGGTTGCTCTCTTTTGAAAAAGCTACCTTCCACTATCGGAGATGCCACGAATCTCCAAGTGTTGGAACTTTTCCATTGCGAAAGTTTGGAGGAACTCCCCGAATCTATTGGTAAGTTAACTAATCTCAAGGTATTGGAACTCATGCGTTGTTATATACTGGTGACTCTCCCCAACTCTATCAAGACACCTAAATTGCCGGTCTTGAGCATGAGCGAATGCGAAGATCTACAGGCGTTTCCAACCTACATCAACCTTGAGGATTGTACACAGTTGAAAATGTTTCCAGAAATTTCAACAAACGTTAAAGAACTCAATCTGAGAAATACTGCAATAGAGAACGTGCCATCTTCGATATGCTCTTGGTCTTGTCTTTTCAGATTGGATATGTCAGGGTGTAGAAACCTCAAGGAGTTCCCAAATGTTCCTGTCAGCATCGTAGAGTTGGACTTGAGCAAGACAGAGATAAAGGAAGTTCCTTCATGGATTGAGAATCTAGTCAACTTGCGTACTCTAACTATGGTAGGATGCGACATGCTGGATATTATATCTCCAAACATTTCTAAGTTGAAGAATCTTGAAGATCTTGAACTGACTACCGGCGGTGTTTCTGGGGATACTGCATCTTTTTATGCATTCGTTGAGTTCTCTGACCGGCATGATTGGACTTTAGAATCAGACTTTCAAGTTCACTACATTTTACCGATATGTCTACCCAAGATGGCAATATCATTACGCTTCTGGAGTTATGATTTCGAGACTATTCCAGATTGCATTAACTGTCTCCCCGGGCTTAGTGAGCTTGACGTTAGTGGATGCAGAAATCTCGTCTCACTCCCACAGCTTCCGGGTTCCCTTTTATCTCTAGATGCAAAGAACTGTGAAACTTTGGAGAGAATAAACGGCTCTTTTCAAAACCCAGAGATTTGTCTAAACTTTGCTAACTGCATCAACTTGAATCAAGAAGCGAGAAAGCTCATCCAGACATCAGCTTGCGAATATGCGATCTTACCTGGTGCAGAAGTTCCTGCACACTTCACTCACCAA


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Arabidopsis thaliana].

SKDLKEIPDLSNSTNLEELDLSSCSGLLELTDSIGKTTNLKRLKLAGCSLLKKLPSTIGDATNLQVLELFHCESLEELPESIGKLTNLKVLELMRCYILVTLPNSIKTPKLPVLSMSECEDLQAFPTYINLEDCTQLKMFPEISTNVKELNLRNTAIENVPSSICSWSCLFRLDMSGCRNLKEFPNVPVSIVELDLSKTEIKEVPSWIENLVNLRTLTMVGCDMLDIISPNISKLKNLEDLELTTGGVSGDTASFYAFVEFSDRHDWTLESDFQVHYILPICLPKMAISLRFWSYDFETIPDCINCLPGLSELDVSGCRNLVSLPQLPGSLLSLDAKNCETLERINGSFQNPEICLNFANCINLNQEARKLIQTSACEYAILPGAEVPAHFTHQ


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF300
3-387 PTHR23155:SF300

DLKEIPDLSNSTNLEELDLSSCSGLLELTDSIGKTTNLKRLKLAGCSLLKKLPSTIGDATNLQVLELFHCESLEELPESIGKLTNLKVLELMRCYILVTLPNSIKTPKLPVLSMSECEDLQAFPTYINLEDCTQLKMFPEISTNVKELNLRNTAIENVPSSICSWSCLFRLDMSGCRNLKEFPNVPVSIVELDLSKTEIKEVPSWIENLVNLRTLTMVGCDMLDIISPNISKLKNLEDLELTTGGVSGDTASFYAFVEFSDRHDWTLESDFQVHYILPICLPKMAISLRFWSYDFETIPDCINCLPGLSELDVSGCRNLVSLPQLPGSLLSLDAKNCETLERINGSFQNPEICLNFANCINLNQEARKLIQTSACEYAILPGAEV

HMMPanther: PTHR23155
3-387 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

DLKEIPDLSNSTNLEELDLSSCSGLLELTDSIGKTTNLKRLKLAGCSLLKKLPSTIGDATNLQVLELFHCESLEELPESIGKLTNLKVLELMRCYILVTLPNSIKTPKLPVLSMSECEDLQAFPTYINLEDCTQLKMFPEISTNVKELNLRNTAIENVPSSICSWSCLFRLDMSGCRNLKEFPNVPVSIVELDLSKTEIKEVPSWIENLVNLRTLTMVGCDMLDIISPNISKLKNLEDLELTTGGVSGDTASFYAFVEFSDRHDWTLESDFQVHYILPICLPKMAISLRFWSYDFETIPDCINCLPGLSELDVSGCRNLVSLPQLPGSLLSLDAKNCETLERINGSFQNPEICLNFANCINLNQEARKLIQTSACEYAILPGAEV

Gene3D: G3DSA:3.80.10.10
6-134 G3DSA:3.80.10.10

EIPDLSNSTNLEELDLSSCSGLLELTDSIGKTTNLKRLKLAGCSLLKKLPSTIGDATNLQVLELFHCESLEELPESIGKLTNLKVLELMRCYILVTLPNSIKTPKLPVLSMSECEDLQAFPTYINLEDC

superfamily: SSF52058
10-330 SSF52058,LRR

LSNSTNLEELDLSSCSGLLELTDSIGKTTNLKRLKLAGCSLLKKLPSTIGDATNLQVLELFHCESLEELPESIGKLTNLKVLELMRCYILVTLPNSIKTPKLPVLSMSECEDLQAFPTYINLEDCTQLKMFPEISTNVKELNLRNTAIENVPSSICSWSCLFRLDMSGCRNLKEFPNVPVSIVELDLSKTEIKEVPSWIENLVNLRTLTMVGCDMLDIISPNISKLKNLEDLELTTGGVSGDTASFYAFVEFSDRHDWTLESDFQVHYILPICLPKMAISLRFWSYDFETIPDCINCLPGLSELDVSGCRNLVSLPQLPGS

HMMPfam: PF00560
IPR001611
15-34 LRR_1
Leucine-rich repeat

NLEELDLSSCSGLLELTDSI

HMMPfam: PF13504
38-55 LRR_7,Leucine rich repeat

TNLKRLKLAGCSLLKKLP

HMMPfam: PF12799
62-98 LRR_4,Leucine Rich repeats (2 copies)

TNLQVLELFHCESLEELPESIGKLTNLKVLELMRCYI

Gene3D: G3DSA:3.80.10.10
135-249 G3DSA:3.80.10.10

TQLKMFPEISTNVKELNLRNTAIENVPSSICSWSCLFRLDMSGCRNLKEFPNVPVSIVELDLSKTEIKEVPSWIENLVNLRTLTMVGCDMLDIISPNISKLKNLEDLELTTGGVS

Gene3D: G3DSA:3.80.10.10
298-350 G3DSA:3.80.10.10

ETIPDCINCLPGLSELDVSGCRNLVSLPQLPGSLLSLDAKNCETLERINGSFQ

HMMPfam: PF00560
IPR001611
310-326 LRR_1
Leucine-rich repeat

LSELDVSGCRNLVSLPQ


List of References

Jingdan Shen, Hitoshi Araki, Lingling Chen, Jian-Qun Chen, Dacheng Tian
Unique evolutionary mechanism in R-genes under the presence/absence polymorphism in Arabidopsis thaliana.
Genetics: 2006, 172(2);1243-50
PubMed:16452149 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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