PRGDB00046897 (RPS5)

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RPS5
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 77632437 (DQ220640)
Gene Class NL
Domain Type LRR, NBS, Others
Gene Species Arabidopsis lyrata

Comment?

Arabidopsis lyrata ecotype CE disease resistance protein (RPS5) gene, partial cds.

DNA Sequence

ATGGGAGGTTGTTTCTCTGTTTCATTGCCATGTGATCAAGTAGTGAGTCAGTTCTCTCAGTTATTATGTGTCAGGGGGAGTTATATTCACAATCTCTCCGAGAATCTGGCTTCTCTGGAGAAGGCCATGGGAGTGCTCCAAGGTCGGCAATATGATGTGATAAGAAGGCTGGAAAGAGAAGAGTTTACAGGGCGTCAACAAAGGCTTTCCCAAGTTCAGGTATGGCTTACTAGTGTCCTACTCATTCAAAACCAGTTTGATGATCTGCTTCGTAGTAAAGAGGTTGAGCTTCAAAGGTTATGTCTCTGTGGTTTCTGCTCCAAAGATTTGAAATTGAGCTATCGTTATGGGAAAAAGGTTAACATGATGTTGAGGGAAGTTGAGAGTCTCAGTTCTCGAGGATTTTTTGATGTGGTGGCTGAGGCTACTCCGTTTGCTGAGGTGGATGAGATCCCTTTTCAACCCACAATTGTTGGTCAGAAAATAATGCTTGAAAAGGCATGGAACCGTCTCATGGAAGATGGATCCGGGATTTTGGGTCTGTACGGTATGGGGGGAGTAGGTAAAACCACACTACTCACCAAGATCAACAATAAGTTTTCTAAAATAGGTGACAGATTTGATGTTGTGATCTGGGTTGTTGTGTCTAGAAGTTCAACAGTCCGTAAGATTCAAAGAGACATAGCAGAAAAGGTTGGCCTTGGGGGGATGGAGTGGGGCGAGAAAAACGATAACCAGATAGCCGTTGACATCCACAATGTCCTTAGGAGACGAAAATTTGTTTTGTTGTTGGATGATATATGGGAGAAAGTGAATTTAAAAGCGGTTGGAGTCCCGTATCCAAGCAAAGATAACGGATGCAAGGTAGCATTCACTACTCGTTCTCGAGATGTGTGTGGGCGCATGGGGGTTGATGATCCGATGGAAGTTAGCTGTCTACAACCCGAAGAATCATGGGATTTGTTCCAAATGACAGTTGGGAAAAATACACTGGGAAGTCACCCAGACATTCCCGGACTTGCTAGAAAAGTCGCTAGGAAATGTCGTGGCCTACCATTAGCACTCAATGTTATCGGTGAAGCTATGGCATGCAAAAGAACAGTACATGAATGGTCTCATGCCATTTACGTTTTGACATCATCTGCCACAGATTTTTCAGGTATGGAAGATGAAATTCTCCATGTTTTGAAGTATAGCTCTGATAATTTAAATGGGGAGCTGATGAAATCCTGCTCCCTGTATTGCTCTCTGTTTCCTGAAGATTACCTTATTGATAAAGAGGGTTGGGTAGACTACGGGATATGTGAGGGATTTATAAATGAAAAAGAAGGCAGAGAGAGGACACTAAACCAAGGTTATGAGATAATTGGTACCCTTGTCCGTGCATGTTTGTTGATGGAGGAAGAAAGGAACAAATCAAATGTAAAAATGCATGATGTGGTTCGTGAGATGGCTCTATGGATATCATCCGATCTTGGGAAGCAAAAGGAGAAATGTATTGTGCGAGCCGGTGTTGGGTTATGTGAAGTACCAAAAGTCAAGGATTGGAACACTGTAAGAAAGATGTCTTTGATGAATAATGAGATTGAAGAGATATTTGACAGTCACAAGTGTGCTGCACTTACAACTCTATTTCTCCAAAAGAACGACATGGTAAAGATCTCGGCTGAATTCTTTCGATGTATGCCTCATCTGGTGGTTTTAGATCTATCAGAGAATCACAGTCTCAATGAATTACCAGAAGAAATATCAGAGTTGGTCTCTTTGAGATATTTCAACTTGTCATATACTTGTATACATCAACTACCCGTAGGTTTATGGACATTGAAAAAGCTAATACATCTGAATCTCGAACACATGAGCAGTCTTGGGAGTATATTAGGGATATCAAATTTGTGGAATTTGAGGACATTGGGACTACGAGATTCCAGACTGTTGCTAGATATGAGTTTAGTGAAGGAGCTGCAGCTCTTAGAACATCTAGAAGTTGTGACCCTAGATATATCATCAAGTTTGGTTGCAGAGCCATTGTTATGCTCTCACAGGTTGGTGGAATGTATAAAAGAGGTAGATATTAAGTATCTTAAGGAAGAAGCAGTAAGAGTATTGACTCTGCCAACCATGGGTAATCTCCGTAGGCTCGGGATAAAAATGTGTGGAATGAGGGAGATAAAGATAGAGTCGACAACTTCATCATCATCGCGGAACATAAGTCCCACAACTCCATTCTTCTCCAACCTCTCCAGTGTCTTTATAGCTAAATGCCATGGTCTTAAGGATTTGACGTGGCTGCTGTTTGCTCCGAATCTTACTTTTCTTGAAGTTGGGTTCTCAAAGGAAGTAGAGGATATAATTAGCGAAGAGAAAGCTGACGAGCATTCTTCAGCTACGATTGTTCCTTTTAGGAAACTAGAAACGCTACACCTGCTTGAATTACGCGGGCTCAAGAGAATCTATGCGAAGACTCTGCCTTTTCCGTGTCTGAAAGTTATCCACGTACAAAAATGTGAAAAGCTGAGAAAGCTTCCATTGGATTCGAAAAGTGGGATCACGGGTGAAGAACTTATCATATATTACGGAGAGAGAGAATGGATCGAAAGGGTTGAATGGGAGGACCAAGCCACTAAACTCCGTTTCTTACCTTCATCCAGGTGGCGGTGGATAGAAACACAA


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Arabidopsis lyrata].

MGGCFSVSLPCDQVVSQFSQLLCVRGSYIHNLSENLASLEKAMGVLQGRQYDVIRRLEREEFTGRQQRLSQVQVWLTSVLLIQNQFDDLLRSKEVELQRLCLCGFCSKDLKLSYRYGKKVNMMLREVESLSSRGFFDVVAEATPFAEVDEIPFQPTIVGQKIMLEKAWNRLMEDGSGILGLYGMGGVGKTTLLTKINNKFSKIGDRFDVVIWVVVSRSSTVRKIQRDIAEKVGLGGMEWGEKNDNQIAVDIHNVLRRRKFVLLLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPEESWDLFQMTVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEAMACKRTVHEWSHAIYVLTSSATDFSGMEDEILHVLKYSSDNLNGELMKSCSLYCSLFPEDYLIDKEGWVDYGICEGFINEKEGRERTLNQGYEIIGTLVRACLLMEEERNKSNVKMHDVVREMALWISSDLGKQKEKCIVRAGVGLCEVPKVKDWNTVRKMSLMNNEIEEIFDSHKCAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSRLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKADEHSSATIVPFRKLETLHLLELRGLKRIYAKTLPFPCLKVIHVQKCEKLRKLPLDSKSGITGEELIIYYGEREWIERVEWEDQATKLRFLPSSRWRWIETQ

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF108
7-882 PTHR23155:SF108,SUBFAMILY NOT NAMED

VSLPCDQVVSQFSQLLCVRGSYIHNLSENLASLEKAMGVLQGRQYDVIRRLEREEFTGRQQRLSQVQVWLTSVLLIQNQFDDLLRSKEVELQRLCLCGFCSKDLKLSYRYGKKVNMMLREVESLSSRGFFDVVAEATPFAEVDEIPFQPTIVGQKIMLEKAWNRLMEDGSGILGLYGMGGVGKTTLLTKINNKFSKIGDRFDVVIWVVVSRSSTVRKIQRDIAEKVGLGGMEWGEKNDNQIAVDIHNVLRRRKFVLLLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPEESWDLFQMTVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEAMACKRTVHEWSHAIYVLTSSATDFSGMEDEILHVLKYSSDNLNGELMKSCSLYCSLFPEDYLIDKEGWVDYGICEGFINEKEGRERTLNQGYEIIGTLVRACLLMEEERNKSNVKMHDVVREMALWISSDLGKQKEKCIVRAGVGLCEVPKVKDWNTVRKMSLMNNEIEEIFDSHKCAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSRLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKADEHSSATIVPFRKLETLHLLELRGLKRIYAKTLPFPCLKVIHVQKCEKLRKLPLDSKSGITGEELIIYYGEREWIERVEWEDQATKLRFLPS

HMMPanther: PTHR23155
7-882 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VSLPCDQVVSQFSQLLCVRGSYIHNLSENLASLEKAMGVLQGRQYDVIRRLEREEFTGRQQRLSQVQVWLTSVLLIQNQFDDLLRSKEVELQRLCLCGFCSKDLKLSYRYGKKVNMMLREVESLSSRGFFDVVAEATPFAEVDEIPFQPTIVGQKIMLEKAWNRLMEDGSGILGLYGMGGVGKTTLLTKINNKFSKIGDRFDVVIWVVVSRSSTVRKIQRDIAEKVGLGGMEWGEKNDNQIAVDIHNVLRRRKFVLLLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPEESWDLFQMTVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEAMACKRTVHEWSHAIYVLTSSATDFSGMEDEILHVLKYSSDNLNGELMKSCSLYCSLFPEDYLIDKEGWVDYGICEGFINEKEGRERTLNQGYEIIGTLVRACLLMEEERNKSNVKMHDVVREMALWISSDLGKQKEKCIVRAGVGLCEVPKVKDWNTVRKMSLMNNEIEEIFDSHKCAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSRLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKADEHSSATIVPFRKLETLHLLELRGLKRIYAKTLPFPCLKVIHVQKCEKLRKLPLDSKSGITGEELIIYYGEREWIERVEWEDQATKLRFLPS

superfamily: SSF52540
137-384 SSF52540

DVVAEATPFAEVDEIPFQPTIVGQKIMLEKAWNRLMEDGSGILGLYGMGGVGKTTLLTKINNKFSKIGDRFDVVIWVVVSRSSTVRKIQRDIAEKVGLGGMEWGEKNDNQIAVDIHNVLRRRKFVLLLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPEESWDLFQMTVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEAMACKRTVHEWSHAIYVLTSSATD

HMMPfam: PF00931
IPR002182
162-442 NB-ARC,NBS
NB-ARC

IMLEKAWNRLMEDGSGILGLYGMGGVGKTTLLTKINNKFSKIGDRFDVVIWVVVSRSSTVRKIQRDIAEKVGLGGMEWGEKNDNQIAVDIHNVLRRRKFVLLLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPEESWDLFQMTVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEAMACKRTVHEWSHAIYVLTSSATDFSGMEDEILHVLKYSSDNLNGELMKSCSLYCSLFPEDYLIDKEGWVDYGICEGFINEK

Gene3D: G3DSA:3.40.50.300
168-268 G3DSA:3.40.50.300

WNRLMEDGSGILGLYGMGGVGKTTLLTKINNKFSKIGDRFDVVIWVVVSRSSTVRKIQRDIAEKVGLGGMEWGEKNDNQIAVDIHNVLRRRKFVLLLDDIW

FPrintScan: PR00364
IPR000767
178-193 DISEASERSIST
Disease resistance protein

ILGLYGMGGVGKTTLL

FPrintScan: PR00364
IPR000767
254-268 DISEASERSIST
Disease resistance protein

VLRRRKFVLLLDDIW

FPrintScan: PR00364
IPR000767
348-362 DISEASERSIST
Disease resistance protein

CRGLPLALNVIGEAM

superfamily: SSF52058
460-881 SSF52058,LRR

VRACLLMEEERNKSNVKMHDVVREMALWISSDLGKQKEKCIVRAGVGLCEVPKVKDWNTVRKMSLMNNEIEEIFDSHKCAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSRLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKADEHSSATIVPFRKLETLHLLELRGLKRIYAKTLPFPCLKVIHVQKCEKLRKLPLDSKSGITGEELIIYYGEREWIERVEWEDQATKLRFLP

Gene3D: G3DSA:3.80.10.10
504-838 G3DSA:3.80.10.10

GVGLCEVPKVKDWNTVRKMSLMNNEIEEIFDSHKCAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSRLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKADEHSSATIVPFRKLETLHLLELRGLKRIYAKTLPFPCLKVIHVQKCEK

HMMPfam: PF13855
541-597 LRR_8,Leucine rich repeat

LTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYT

FPrintScan: PR00364
IPR000767
560-576 DISEASERSIST
Disease resistance protein

RCMPHLVVLDLSENHSL


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Analyses

Blast

Blast matches against Reference R-Genes. Show


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