PRGDB00046914 (RXW8)

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RXW8
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 18181929 (AB077822)
Gene Class CNL
Domain Type LRR, NBS, LRR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana genomic DNA, chromosome 1, P1 clone:X7J, complete sequence.

DNA Sequence

AATTTAAGGTTGATGAGGAAATGGAAAATATGGGTAAGAAGATGATCAAACATTGTGGAGGACTATCATTGGCTGTCAAAGTCTTAGGAGGGTTGTTAGCTGCAAAATACACACTGCATGATTGGAAAAGATTATCTGAGAATATTGGATCTCATATCGTGGAAAGAACTAGCGGTAACAACAGTTCTATTGATCATGTATTGTCTGTGAGCTTTGAAGAATTGCCTAATTATTTGAAGCATTGTTTCCTATACCTCGCCCACTTTCCAGAAGATCATGAGATAGACGTAGAGAAGTTGCATTATTATTGGGCTGCAGAAGGAATATCTGAACGTAGGCGTTACGATGGAGAGACCATTCGAGATACTGGAGATAGCTACATAGAGGAGTTGGTGAGAAGAAATATGGTTATTTCTGAAAGGGACGTTATGACTTCCAGATTTGAAACTTGTCGTTTGCATGACATGATGAGAGAAATTTGTTTGTTTAAAGCCAAAGAAGAGAACTTCCTACAAATTGTCAGTAACCACTCCCCGACATCAAACCCTCAAACTCTTGGTGCTTCTCGCAGATTTGTCTTACATAATCCTACTACATTACATGTTGAGAGATATAAAAATAATCCAAAACTTCGATCGCTCGTGGTTGTCTATGATGATATTGGAAATAGAAGATGGATGCTATCAGGTTCAATCTTTACAAGGGTAAAACTTCTACGGGTGTTAGATCTCGTTCAAGCCAAGTTTAAAGGAGGGAAGTTACCTTCTGACATTGGAAAGCTCATCCACTTAAGATACTTGAGCTTAAAAGATGCCAAGGTATCTCATCTACCTTCTTCTCTAAGAAATCTAGTCCTGCTAATCTATTTAGATATACGCACAGATTTCACGGATATATTCGTGCCCAATGTCTTCATGGGGATGAGAGAATTGAGATATCTTGAACTACCCAGATTTATGCATGAGAAGACAAAGTTGGAGTTGAGTAATCTAGAAAAATTGGAGGCCTTAGAGAATTTCTCAACAAAGAGTAGCAGCTTGGAGGATCTCCGTGGTATGGTCAGGTTGAGGACTCTTGTGATCATTTTAAGTGAGGGGACTAGTCTACAAACTCTATCTGCATCAGTATGTGGACTGAGACACTTGGAAAATTTTAAAATAATGGAAAACGCTGGCGTTAACAGGATGGGAGAAGAGAGAATGGTATTGGATTTCACTTATCTCAAAAAGCTCACCTTGAGTATAGAGATGCCAAGGCTTCCTAAAATACAACACCTTCCTTCTCACCTTACGGTCTTAGATCTATCTTACTGTTGTTTGGAGGAAGATCCAATGCCGATTCTAGAGAAATTACTCGAGTTAAAAGATTTAAGTTTAGATTATCTATCTTTCTCCGGGAGGAAAATGGTTTGCTCGGCTGGTGGGTTTCCTCAATTGCGTAAGCTAGCTTTGGATGAACAAGAGGAGTGGGAAGAGTGGATAGTAGAAGAAGGCTCCATGTCACGGCTTCATACTCTAAGTATTTGGAGTTCAACATTAAAGGAGCTTCCTGATGGGCTGCGATTCATATATTCTTTAAAGAATCTGATCATGGGAAAGAGCTGGATGGAGAGATTATCGGAACGAGGAGAAGAATTTTACAAAGTTCAAAACATTCCTTTTATTAAATTCAGTTCTTAAGTTGGAAGGTGCTACTTACTTCTCGAACTGAGAGTATCGCGATGCGTGGAGATACAACATATATTAGCTTTAAACCAAAATGCCTATCTATCCCAGACAGTTGGACACTTTTCCAAAGCATAGCAATGCCAAGGAAAGATACATCCGATGGAACTTGTGTCGTTTGGAGTAGAAAAGCTTTGGGACCGACTGAGCCAAGAATATGACCAATTTAAAGGAGTTGAAGATCAAGTAACTGAGTTAAAAAGTAACCTAAACTTGTTAAAGTCATTTTTGAAAGATGCAGATGCCAAGAAACATATAAGTGAGATGGTGCGACACTGTGTGGAAGAGATCAAAGATATTGTTTATGACACGGAGGACATAATCGAAACGTTTATTCTCAAGGAAAAAGTTGAAATGAAACGTGGCATCATGAAGCGTATCAAAAGATTTGCTTCGACTATAATGGATCGTAGGGAACTTGCGTCTGATATTGGAGGAATAAGTAAGCGGATCTCCAAGGTGATACAGGATATGCAAAGTTTTGGAGTACAACAGATAATTACTGATGGCAGCCGTTCTTCACATCCACTACAAGAAAGACAAAGGGAGATGCGGCACACGTTTTCTAGGGACTCCGAAAACGATTTTGTGGGAATGGAAGCAAATGTTAAGAAATTGGTTGGATATTTGGTGGAGAAAGATGACTATCAAATTGTTTCTTTAACCGGGATGGGTGGTCTTGGTAAAACCACCCTTGCTAGACAAGTTTTTAATCATGATGTTGTAAAAGATCGGTTTGATGGATTCGCATGGGTGAGTGTTTCGCAAGAGTTTACTCGGATATCGGTGTGGCAAACGATCTTGCAGAATCTCACATCTAAAGAGAGGAAAGATGAAATCCAGAATATGAAAGAAGCTGACCTTCATGATGATCTCTTCCGATTGTTGGAATCATCTAAAACATTAATTGTGCTAGATGACATATGGAAAGAAGAAGATTGGGACTTAATCAAGCCAATATTTCCACCCAAAAAAG


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Arabidopsis thaliana].

MELVSFGVEKLWDRLSQEYDQFKGVEDQVTELKSNLNLLKSFLKDADAKKHISEMVRHCVEEIKDIVYDTEDIIETFILKEKVEMKRGIMKRIKRFASTIMDRRELASDIGGISKRISKVIQDMQSFGVQQIITDGSRSSHPLQERQREMRHTFSRDSENDFVGMEANVKKLVGYLVEKDDYQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRISVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIWKEEDWDLIKPIFPPKKGWKVLLTSRTESIAMRGDTTYISFKPKCLSIPDSWTLFQSIAMPRKDTSEFKVDEEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKRLSENIGSHIVERTSGNNSSIDHVLSVSFEELPNYLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISERRRYDGETIRDTGDSYIEELVRRNMVISERDVMTSRFETCRLHDMMREICLFKAKEENFLQIVSNHSPTSNPQTLGASRRFVLHNPTTLHVERYKNNPKLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDFTDIFVPNVFMGMRELRYLELPRFMHEKTKLELSNLEKLEALENFSTKSSSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCGLRHLENFKIMENAGVNRMGEERMVLDFTYLKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLSFSGRKMVCSAGGFPQLRKLALDEQEEWEEWIVEEGSMSRLHTLSIWSSTLKELPDGLRFIYSLKNLIMGKSWMERLSERGEEFYKVQNIPFIKFSS

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
1-897 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MELVSFGVEKLWDRLSQEYDQFKGVEDQVTELKSNLNLLKSFLKDADAKKHISEMVRHCVEEIKDIVYDTEDIIETFILKEKVEMKRGIMKRIKRFASTIMDRRELASDIGGISKRISKVIQDMQSFGVQQIITDGSRSSHPLQERQREMRHTFSRDSENDFVGMEANVKKLVGYLVEKDDYQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRISVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIWKEEDWDLIKPIFPPKKGWKVLLTSRTESIAMRGDTTYISFKPKCLSIPDSWTLFQSIAMPRKDTSEFKVDEEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKRLSENIGSHIVERTSGNNSSIDHVLSVSFEELPNYLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISERRRYDGETIRDTGDSYIEELVRRNMVISERDVMTSRFETCRLHDMMREICLFKAKEENFLQIVSNHSPTSNPQTLGASRRFVLHNPTTLHVERYKNNPKLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDFTDIFVPNVFMGMRELRYLELPRFMHEKTKLELSNLEKLEALENFSTKSSSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCGLRHLENFKIMENAGVNRMGEERMVLDFTYLKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLSFSGRKMVCSAGGFPQLRKLALDEQEEWEEWIVEEGSMSRLHTLSIWSSTLKELPDGLRFIYSLKNLIMGKSWMERLSERGEEFYKVQNIPFIKF

HMMPanther: PTHR23155:SF233
1-897 PTHR23155:SF233,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

MELVSFGVEKLWDRLSQEYDQFKGVEDQVTELKSNLNLLKSFLKDADAKKHISEMVRHCVEEIKDIVYDTEDIIETFILKEKVEMKRGIMKRIKRFASTIMDRRELASDIGGISKRISKVIQDMQSFGVQQIITDGSRSSHPLQERQREMRHTFSRDSENDFVGMEANVKKLVGYLVEKDDYQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRISVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIWKEEDWDLIKPIFPPKKGWKVLLTSRTESIAMRGDTTYISFKPKCLSIPDSWTLFQSIAMPRKDTSEFKVDEEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKRLSENIGSHIVERTSGNNSSIDHVLSVSFEELPNYLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISERRRYDGETIRDTGDSYIEELVRRNMVISERDVMTSRFETCRLHDMMREICLFKAKEENFLQIVSNHSPTSNPQTLGASRRFVLHNPTTLHVERYKNNPKLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDFTDIFVPNVFMGMRELRYLELPRFMHEKTKLELSNLEKLEALENFSTKSSSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCGLRHLENFKIMENAGVNRMGEERMVLDFTYLKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLSFSGRKMVCSAGGFPQLRKLALDEQEEWEEWIVEEGSMSRLHTLSIWSSTLKELPDGLRFIYSLKNLIMGKSWMERLSERGEEFYKVQNIPFIKF

superfamily: SSF52540
143-397 SSF52540

LQERQREMRHTFSRDSENDFVGMEANVKKLVGYLVEKDDYQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRISVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIWKEEDWDLIKPIFPPKKGWKVLLTSRTESIAMRGDTTYISFKPKCLSIPDSWTLFQSIAMPRKDTSEFKVDEEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKRLSENIGSHIVERT

Gene3D: G3DSA:3.40.50.300
159-279 G3DSA:3.40.50.300

ENDFVGMEANVKKLVGYLVEKDDYQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRISVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIWKEED

HMMPfam: PF00931
IPR002182
166-451 NB-ARC,NBS
NB-ARC

EANVKKLVGYLVEKDDYQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRISVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIWKEEDWDLIKPIFPPKKGWKVLLTSRTESIAMRGDTTYISFKPKCLSIPDSWTLFQSIAMPRKDTSEFKVDEEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKRLSENIGSHIVERTSGNNSSIDHVLSVSFEELPNYLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISE

FPrintScan: PR00364
IPR000767
184-199 DISEASERSIST
Disease resistance protein

IVSLTGMGGLGKTTLA

FPrintScan: PR00364
IPR000767
261-275 DISEASERSIST
Disease resistance protein

LLESSKTLIVLDDIW

FPrintScan: PR00364
IPR000767
359-373 DISEASERSIST
Disease resistance protein

CGGLSLAVKVLGGLL

superfamily: SSF52058
492-871 SSF52058,LRR

RLHDMMREICLFKAKEENFLQIVSNHSPTSNPQTLGASRRFVLHNPTTLHVERYKNNPKLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDFTDIFVPNVFMGMRELRYLELPRFMHEKTKLELSNLEKLEALENFSTKSSSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCGLRHLENFKIMENAGVNRMGEERMVLDFTYLKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLSFSGRKMVCSAGGFPQLRKLALDEQEEWEEWIVEEGSMSRLHTLSIWSSTLKELPDGLRFIYSLKNLIM

Gene3D: G3DSA:3.80.10.10
550-696 G3DSA:3.80.10.10

KLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDFTDIFVPNVFMGMRELRYLELPRFMHEKTKLELSNLEKLEALENFSTKSSSLEDLRGMVRL

FPrintScan: PR00364
IPR000767
574-590 DISEASERSIST
Disease resistance protein

TRVKLLRVLDLVQAKFK

Gene3D: G3DSA:3.80.10.10
748-871 G3DSA:3.80.10.10

LKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLSFSGRKMVCSAGGFPQLRKLALDEQEEWEEWIVEEGSMSRLHTLSIWSSTLKELPDGLRFIYSLKNLIM


List of References

A Kato, M Suzuki, A Kuwahara, H Ooe, K Higano-Inaba, Y Komeda
Isolation and analysis of cDNA within a 300 kb Arabidopsis thaliana genomic region located around the 100 map unit of chromosome 1.
Gene: 1999, 239(2);309-16
PubMed:10548732 WorldCat.org (P p)

M Suzuki, A Kato, Y Komeda
An RNA-binding protein, AtRBP1, is expressed in actively proliferative regions in Arabidopsis thaliana.
Plant Cell Physiol.: 2000, 41(3);282-8
PubMed:10805591 WorldCat.org (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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