PRGDB00046927 (RGH5)

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RGH5
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 16322957 (AY050264)
Gene Class N
Domain Type NBS
Gene Species Theobroma cacao

Comment?

Theobroma cacao isolate C11 disease resistance protein (RGH5) gene, partial cds.

DNA Sequence

GAAGAAGTAGGAATCCCCCAGCCTTCTAACGGGAGTAAATTAGTGGTAACAACTCGGATGTTGGATGTGTGTCGTTATTTAGAATGTCGAGAAGTTAAAATGCCTACTCTTGCAGAACAAGATGCATGGAGTTTGTTCTTGGAGAAAGTAAGTGGAGATGTTTTTAAAAATGAAAGTCTATTACCAATTGCGAAATCTATTGTTGCGCAATGTGCTGGTTTGCCGTTAGCTATAGTTACAGTAGCTAGCAGTATGAAGGGTATAAGAAATGTTCATGAATGGAGGAATGCACTAAATGAATTAAGTGGACGTGTAAAAGGTGTGACTGGGTTAGATGAAACGGTACTGCAGCAACTCCAATTCAGCTATGATCATTTAAAAGATGAAATAGTCAAGCATTGCTTCCTCTGTTGTGC


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Theobroma cacao].

EEVGIPQPSNGSKLVVTTRMLDVCRYLECREVKMPTLAEQDAWSLFLEKVSGDVFKNESLLPIAKSIVAQCAGLPLAIVTVASSMKGIRNVHEWRNALNELSGRVKGVTGLDETVLQQLQFSYDHLKDEIVKHCFLCCA


Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
5-139 NB-ARC,NBS
NB-ARC

IPQPSNGSKLVVTTRMLDVCRYLECREVKMPTLAEQDAWSLFLEKVSGDVFKNESLLPIAKSIVAQCAGLPLAIVTVASSMKGIRNVHEWRNALNELSGRVKGVTGLDETVLQQLQFSYDHLKDEIVKHCFLCCA

superfamily: SSF52540
10-107 SSF52540

NGSKLVVTTRMLDVCRYLECREVKMPTLAEQDAWSLFLEKVSGDVFKNESLLPIAKSIVAQCAGLPLAIVTVASSMKGIRNVHEWRNALNELSGRVKG


List of References

D N Kuhn, M Heath, R J Wisser, A Meerow, J S Brown, U Lopes, R J Schnell
Resistance gene homologues in Theobroma cacao as useful genetic markers.
Theor. Appl. Genet.: 2003, 107(2);191-202
PubMed:12845435 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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