PRGDB00046946 (disease resistance protein (CC-NBS-LRR class), putative)

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disease resistance protein (CC-NBS-LRR class), putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 145359580 (NM_125696)
Gene Class NL
Domain Type LRR, LRR, NBS, LRR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana disease resistance protein (CC-NBS-LRR class), putative (AT5G63020) mRNA, complete cds.

DNA Sequence

ATGGGAGGTTGTGTCTCTGTATCAATATCATGTGATCAGTTGACGAAGAATGTTTGTAGTTGCTTAAACAGGAATGGAGATTACATTCATGGCTTAGAGGAGAATCTGACAGCTCTGCAGAGAGCTCTTGAGCAGATTGAGCAAAGACGAGAAGATTTGTTGAGAAAGATTTTGTCTGAAGAAAGACGAGGTTTACAACGACTTTCTGTTGTGCAAGGATGGGTTTCAAAAGTTGAAGCAATAGTACCTCGAGTTAACGAACTCGTCAGAATGAGATCTGTTCAAGTCCAAAGGTTGTGTCTTTGTGGGTTTTGTTCCAAGAATCTTGTCTCAAGCTACCGTTATGGGAAGAGAGTAATGAAGATGATAGAGGAAGTTGAGGTTCTTCGATATCAGGGAGATTTCGCTGTGGTGGCTGAGAGAGTTGATGCAGCAAGAGTGGAAGAGAGGCCTACTAGACCTATGGTTGCTATGGATCCAATGCTTGAGAGTGCGTGGAACCGTCTAATGGAAGATGAGATTGGGATTCTTGGTCTTCATGGTATGGGTGGAGTAGGTAAAACTACACTTCTCAGTCATATCAACAATAGATTCTCTAGAGTTGGGGGCGAGTTTGATATTGTGATTTGGATTGTGGTCTCCAAAGAGTTACAGATCCAGAGGATCCAAGATGAGATATGGGAGAAGTTACGGTCTGATAACGAGAAGTGGAAACAGAAAACAGAGGACATAAAAGCATCTAACATTTACAATGTGTTAAAGCACAAAAGGTTTGTCTTGTTATTGGATGACATATGGAGTAAAGTGGATTTAACAGAGGTGGGAGTTCCGTTTCCGAGTAGAGAAAACGGATGCAAAATAGTATTCACCACTCGGTTGAAAGAAATCTGCGGGCGGATGGGAGTTGATAGCGATATGGAAGTCCGGTGTTTAGCCCCGGATGATGCGTGGGATTTGTTTACTAAGAAAGTAGGAGAGATCACATTAGGGAGCCACCCTGAGATTCCCACAGTCGCAAGAACAGTTGCTAAGAAATGTCGCGGCCTACCATTGGCCCTTAACGTCATTGGTGAAACAATGGCATATAAAAGGACAGTGCAAGAATGGCGTTCAGCAATCGACGTTTTGACTTCATCTGCAGCTGAGTTTTCAGGTATGGAAGATGAGATTCTACCTATTCTAAAGTACAGCTATGATAATTTAAAAAGTGAACAGCTCAAATTGTGCTTCCAGTACTGTGCTTTGTTTCCAGAAGATCATAACATTGAGAAAAATGATTTGGTAGATTACTGGATAGGTGAGGGATTCATAGATAGAAACAAAGGTAAAGCTGAGAACCAAGGTTATGAAATTATCGGTATTCTAGTTCGTTCATGCTTATTGATGGAGGAGAATCAAGAAACGGTGAAGATGCATGATGTGGTCCGAGAAATGGCATTGTGGATAGCATCTGATTTTGGAAAGCAAAAAGAAAACTTTATAGTGCAAGCGGGCTTACAGTCGAGGAACATACCTGAGATCGAGAAGTGGAAAGTTGCGAGAAGGGTGTCATTGATGTTTAACAACATTGAAAGTATACGTGATGCTCCTGAATCTCCCCAACTTATAACTTTGCTCCTCCGAAAGAACTTCTTGGGGCATATCTCAAGCAGCTTCTTTCGGTTGATGCCAATGCTAGTTGTTCTTGATCTATCAATGAACAGGGATCTCAGACATTTGCCAAATGAAATATCAGAATGTGTCTCATTGCAGTATCTGAGCTTATCACGTACAAGGATAAGGATTTGGCCTGCTGGTTTAGTAGAGTTGAGGAAACTTTTATACCTGAATTTGGAGTACACAAGGATGGTAGAGAGTATCTGTGGCATATCAGGTTTAACAAGTTTGAAAGTGTTGAGATTATTTGTTTCCGGTTTCCCTGAAGATCCCTGTGTTTTGAACGAGTTGCAGCTTTTGGAAAACTTGCAAACTTTAACCATAACTCTTGGTCTTGCTTCTATTTTGGAACAATTCCTTAGCAACCAGAGGTTGGCAAGCTGTACACGAGCTCTGCGCATCGAGAATCTTAATCCGCAATCATCTGTAATCTCATTTGTTGCTACTATGGACAGTCTTCAAGAGCTTCATTTTGCAGACTCTGACATTTGGGAGATCAAGGTAAAGAGGAATGAGACGGTTTTGCCTCTGCACATCCCAACCACTACCACATTCTTCCCAAACCTCTCGCAAGTGTCTTTAGAATTCTGCACAAGATTGCGGGATTTGACGTGGCTGATCTTTGCTCCAAATCTTACGGTTCTACGAGTAATTTCAGCGAGTGACCTGAAAGAAGTAATAAACAAAGAGAAAGCTGAGCAGCAAAACCTTATTCCCTTCCAAGAACTAAAAGAGTTGCGGCTAGAAAATGTTCAGATGCTAAAACACATCCACCGGGGTCCCCTGCCATTTCCCTGTTTACAGAAAATTTTGGTTAATGGATGCTCAGAGCTGAGAAAACTTCCACTCAATTTCACGAGTGTCCCAAGAGGTGATCTTGTCATAGAGGCACATAAAAAATGGATAGAAATCCTTGAATGGGAAGATGAAGCCACCAAAGCCCGTTTCTTGCCTACACTCAAGGCTTTTCCGGAGAACATCGACGCTGACGGCTATGAGATTTCCTTCTGA


Protein sequences

Name Description Sequence
disease resistance protein (CC-NBS-LRR class), putative disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana].

MGGCVSVSISCDQLTKNVCSCLNRNGDYIHGLEENLTALQRALEQIEQRREDLLRKILSEERRGLQRLSVVQGWVSKVEAIVPRVNELVRMRSVQVQRLCLCGFCSKNLVSSYRYGKRVMKMIEEVEVLRYQGDFAVVAERVDAARVEERPTRPMVAMDPMLESAWNRLMEDEIGILGLHGMGGVGKTTLLSHINNRFSRVGGEFDIVIWIVVSKELQIQRIQDEIWEKLRSDNEKWKQKTEDIKASNIYNVLKHKRFVLLLDDIWSKVDLTEVGVPFPSRENGCKIVFTTRLKEICGRMGVDSDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWRSAIDVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFIDRNKGKAENQGYEIIGILVRSCLLMEENQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICGISGLTSLKVLRLFVSGFPEDPCVLNELQLLENLQTLTITLGLASILEQFLSNQRLASCTRALRIENLNPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEKAEQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCSELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATKARFLPTLKAFPENIDADGYEISF

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
1-878 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MGGCVSVSISCDQLTKNVCSCLNRNGDYIHGLEENLTALQRALEQIEQRREDLLRKILSEERRGLQRLSVVQGWVSKVEAIVPRVNELVRMRSVQVQRLCLCGFCSKNLVSSYRYGKRVMKMIEEVEVLRYQGDFAVVAERVDAARVEERPTRPMVAMDPMLESAWNRLMEDEIGILGLHGMGGVGKTTLLSHINNRFSRVGGEFDIVIWIVVSKELQIQRIQDEIWEKLRSDNEKWKQKTEDIKASNIYNVLKHKRFVLLLDDIWSKVDLTEVGVPFPSRENGCKIVFTTRLKEICGRMGVDSDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWRSAIDVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFIDRNKGKAENQGYEIIGILVRSCLLMEENQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICGISGLTSLKVLRLFVSGFPEDPCVLNELQLLENLQTLTITLGLASILEQFLSNQRLASCTRALRIENLNPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEKAEQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCSELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATKARFLPTLKAFPEN

HMMPanther: PTHR23155:SF108
1-878 PTHR23155:SF108,SUBFAMILY NOT NAMED

MGGCVSVSISCDQLTKNVCSCLNRNGDYIHGLEENLTALQRALEQIEQRREDLLRKILSEERRGLQRLSVVQGWVSKVEAIVPRVNELVRMRSVQVQRLCLCGFCSKNLVSSYRYGKRVMKMIEEVEVLRYQGDFAVVAERVDAARVEERPTRPMVAMDPMLESAWNRLMEDEIGILGLHGMGGVGKTTLLSHINNRFSRVGGEFDIVIWIVVSKELQIQRIQDEIWEKLRSDNEKWKQKTEDIKASNIYNVLKHKRFVLLLDDIWSKVDLTEVGVPFPSRENGCKIVFTTRLKEICGRMGVDSDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWRSAIDVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFIDRNKGKAENQGYEIIGILVRSCLLMEENQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICGISGLTSLKVLRLFVSGFPEDPCVLNELQLLENLQTLTITLGLASILEQFLSNQRLASCTRALRIENLNPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEKAEQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCSELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATKARFLPTLKAFPEN

superfamily: SSF52540
137-382 SSF52540

VVAERVDAARVEERPTRPMVAMDPMLESAWNRLMEDEIGILGLHGMGGVGKTTLLSHINNRFSRVGGEFDIVIWIVVSKELQIQRIQDEIWEKLRSDNEKWKQKTEDIKASNIYNVLKHKRFVLLLDDIWSKVDLTEVGVPFPSRENGCKIVFTTRLKEICGRMGVDSDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWRSAIDVLTSSAAE

HMMPfam: PF00931
IPR002182
160-440 NB-ARC,NBS
NB-ARC

PMLESAWNRLMEDEIGILGLHGMGGVGKTTLLSHINNRFSRVGGEFDIVIWIVVSKELQIQRIQDEIWEKLRSDNEKWKQKTEDIKASNIYNVLKHKRFVLLLDDIWSKVDLTEVGVPFPSRENGCKIVFTTRLKEICGRMGVDSDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWRSAIDVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFIDRN

Gene3D: G3DSA:3.40.50.300
166-267 G3DSA:3.40.50.300

WNRLMEDEIGILGLHGMGGVGKTTLLSHINNRFSRVGGEFDIVIWIVVSKELQIQRIQDEIWEKLRSDNEKWKQKTEDIKASNIYNVLKHKRFVLLLDDIWS

FPrintScan: PR00364
IPR000767
176-191 DISEASERSIST
Disease resistance protein

ILGLHGMGGVGKTTLL

FPrintScan: PR00364
IPR000767
252-266 DISEASERSIST
Disease resistance protein

VLKHKRFVLLLDDIW

FPrintScan: PR00364
IPR000767
346-360 DISEASERSIST
Disease resistance protein

CRGLPLALNVIGETM

superfamily: SSF52058
470-842 SSF52058,LRR

KMHDVVREMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICGISGLTSLKVLRLFVSGFPEDPCVLNELQLLENLQTLTITLGLASILEQFLSNQRLASCTRALRIENLNPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEKAEQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCSELRKLPLNFTSVPR

Gene3D: G3DSA:3.80.10.10
500-837 G3DSA:3.80.10.10

QSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICGISGLTSLKVLRLFVSGFPEDPCVLNELQLLENLQTLTITLGLASILEQFLSNQRLASCTRALRIENLNPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEKAEQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCSELRKLPLNF

HMMPfam: PF13855
533-593 LRR_8,Leucine rich repeat

PQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRI

FPrintScan: PR00364
IPR000767
554-570 DISEASERSIST
Disease resistance protein

RLMPMLVVLDLSMNRDL






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