PRGDB00046951 (disease resistance protein (CC-NBS-LRR class), putative)

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disease resistance protein (CC-NBS-LRR class), putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 18407626 (NM_104941)
Gene Class CNL
Domain Type LRR, NBS, LRR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana disease resistance protein (CC-NBS-LRR class), putative (AT1G62630) mRNA, complete cds.

DNA Sequence

ATGGGTATTTCTTTCTCGATACCCTTTGATCCGTGTGTAAATAAAGTCTCTCAATGGCTAGACATGAAAGGAAGTTATACTCACAATCTCGAGAAGAATCTTGTGGCTCTCGAGACAACCATGGAAGAGCTCAAGGCCAAGCGGGATGATTTATTAAGAAGGCTCAAAAGAGAGGAGGATAGAGGTCTACAAAGGCTTTCCGAATTCCAGGTATGGCTTAATAGAGTTGCAACTGTCGAAGACATAATTATTACTCTTCTTAGAGATAGAGATGTTGAAATTCAAAGGCTGTGTCTTTGCCGGTTTTGCTCTAAGAATTTAACGACGAGCTATCGTTATGGGAAAAGTGTTTTCTTGAGGTTGAGGGAGGTTGAGAAACTCAAAGGTGAAGTTTTTGGAGTGATAACCGAGCAAGCTTCAACATCTGCGTTTGAGGAACGACCTCTTCAGCCGACAATTGTTGGTCAAAAGAAAATGCTTGATAAGGCATGGAAACATCTCATGGAAGATGGAACTGGTATTATGGGTATGTACGGTATGGGCGGTGTAGGGAAGACAACACTTCTCACTCAGCTCTTCAATATGTTCAATAAGGATAAGTGTGGATTTGATATTGGCATTTGGGTTGTCGTGTCTCAAGAGGTTAATGTGGAGAAGATTCAAGATGAAATCGCTCAAAAGCTTGGTCTTGGTGGACATGAGTGGACACAGAGAGATATAAGTCAAAAGGGCGTTCATTTATTCAATTTCTTGAAGAACAAGAAATTTGTGTTGTTTTTAGATGACTTATGGGATAAGGTGGAGTTAGCTAATATCGGTGTTCCGGATCCAAGAACACAAAAAGGATGTAAATTGGCATTCACCAGTCGGTCCCTAAATGTATGCACAAGCATGGGGGATGAAGAACCAATGGAAGTTCAATGCTTGGAAGAGAATGTGGCATTTGATTTGTTCCAAAAGAAGGTTGGACAAAAAACACTTGGAAGCGATCCGGGGATCCCCCAACTTGCAAGAATAGTTGCGAAAAAATGTTGTGGCCTACCATTGGCCCTCAACGTCATAGGCGAGACCATGTCATGCAAAAGGACGATACAAGAATGGCGTAACGCTATACATGTTTTGAATTCATACGCTGCAGAGTTTATAGGCATGGAGGATAAGATTCTTCCGCTTTTGAAGTATAGCTACGATAACCTTAAGGGGGAGCATGTCAAATCGAGTTTGTTGTATTGTGCTTTATATCCAGAAGATGCTAAAATTCGGAAAGAAGATTTGATAGAGCATTGGATATGCGAGGAAATTATAGATGGAAGTGAAGGTATAGAAAAGGCTGAGGACAAGGGTTATGACATCATTGGTAGTCTTGTTCGTGCATCACTGTTGATGGAGTGTGTTGATTTGAAAGGAAAATCTAGTGTGATTATGCATGATGTTGTTCGTGAAATGGCATTATGGATCGCTTCCGAACTGGGAATACAAAAAGAAGCCTTTATTGTGCGTGCAGGTGTTGGCGTACGTGAAATTCCAAAGGTTAAGAATTGGAATGTTGTGAGAAGGATGTCATTGATGGGGAACAAGATTCATCATCTCGTTGGTAGTTATGAATGTATGGAACTCACAACTTTGCTCCTGGGAGAGGGAGAATATGGAAGTATTTGGAGATGGAGTGAAATAAAAACGATCTCGAGTGAATTCTTCAATTGCATGCCAAAGCTAGCTGTTTTGGATCTATCGCATAATCAAAGTCTCTTTGAATTGCCGGAAGAAATATCAAATCTAGTTTCTTTGAAATATCTCAACTTGTCACATACTGGGATACGTCATTTGTCTAAGGGTATACAAGAGTTGAAGAAAATAATTCACTTGAATTTGGAGCATACAAGTAAGCTTGAGAGTATTGATGGGATATCAAGTCTGCATAACTTGAAAGTTCTGAAATTATATGGTTCTAGATTACCATGGGATCTCAACACAGTGAAGGAGCTGGAAACTTTGGAACATTTAGAAATTTTAACCACAACTATCGATCCAAGAGCGAAGCAGTTTTTGAGCTCCCATAGGTTGATGAGTCGTTCACGATTGCTACAGATCTTTGGATCTAATATATTCTCACCGGATAGACAACTAGAATCACTTTCAGTATCTACGGACAAGCTTCGTGAATTTGAAATTATGTGCTGCAGTATCTCTGAGATAAAGATGGGAGGGATATGCAACTTCTTGAGCCTCGTAGATGTGACTATATACAATTGTGAAGGCTTGAGGGAATTGACGTTTCTGATCTTTGCTCCAAAGCTTAGATCTCTTTCTGTTGTGGATGCAAAAGACCTAGAAGATATAATAAACGAAGAGAAAGCTTGTGAAGGTGAAGATTCAGGGATTGTTCCTTTTCCAGAGCTGAAGTATCTTAATTTAGATGATCTACCGAAGCTGAAGAATATCTATCGGAGACCTCTACCCTTTCTATGTCTAGAAAAAATCACTATAGGGGAATGTCCAAATCTGAGAAAGCTTCCACTCGATTCCAGAAGTGGCAAGCAAGGCGAAAATGGATGCATCATACATTACAAAGATTCACGTTGGTTGAAAGGTGTGAAATGGGCAGACGAAGCTACGAAAAAACGCTTCTTACCTTCATGCGAACACCGATTAGAAAGGTGTGAAACAATCTTTGAAGACTAG


Protein sequences

Name Description Sequence
disease resistance protein (CC-NBS-LRR class), putative disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana].

MGISFSIPFDPCVNKVSQWLDMKGSYTHNLEKNLVALETTMEELKAKRDDLLRRLKREEDRGLQRLSEFQVWLNRVATVEDIIITLLRDRDVEIQRLCLCRFCSKNLTTSYRYGKSVFLRLREVEKLKGEVFGVITEQASTSAFEERPLQPTIVGQKKMLDKAWKHLMEDGTGIMGMYGMGGVGKTTLLTQLFNMFNKDKCGFDIGIWVVVSQEVNVEKIQDEIAQKLGLGGHEWTQRDISQKGVHLFNFLKNKKFVLFLDDLWDKVELANIGVPDPRTQKGCKLAFTSRSLNVCTSMGDEEPMEVQCLEENVAFDLFQKKVGQKTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRNAIHVLNSYAAEFIGMEDKILPLLKYSYDNLKGEHVKSSLLYCALYPEDAKIRKEDLIEHWICEEIIDGSEGIEKAEDKGYDIIGSLVRASLLMECVDLKGKSSVIMHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKVKNWNVVRRMSLMGNKIHHLVGSYECMELTTLLLGEGEYGSIWRWSEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEISNLVSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESIDGISSLHNLKVLKLYGSRLPWDLNTVKELETLEHLEILTTTIDPRAKQFLSSHRLMSRSRLLQIFGSNIFSPDRQLESLSVSTDKLREFEIMCCSISEIKMGGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACEGEDSGIVPFPELKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGENGCIIHYKDSRWLKGVKWADEATKKRFLPSCEHRLERCETIFED

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
5-886 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

FSIPFDPCVNKVSQWLDMKGSYTHNLEKNLVALETTMEELKAKRDDLLRRLKREEDRGLQRLSEFQVWLNRVATVEDIIITLLRDRDVEIQRLCLCRFCSKNLTTSYRYGKSVFLRLREVEKLKGEVFGVITEQASTSAFEERPLQPTIVGQKKMLDKAWKHLMEDGTGIMGMYGMGGVGKTTLLTQLFNMFNKDKCGFDIGIWVVVSQEVNVEKIQDEIAQKLGLGGHEWTQRDISQKGVHLFNFLKNKKFVLFLDDLWDKVELANIGVPDPRTQKGCKLAFTSRSLNVCTSMGDEEPMEVQCLEENVAFDLFQKKVGQKTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRNAIHVLNSYAAEFIGMEDKILPLLKYSYDNLKGEHVKSSLLYCALYPEDAKIRKEDLIEHWICEEIIDGSEGIEKAEDKGYDIIGSLVRASLLMECVDLKGKSSVIMHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKVKNWNVVRRMSLMGNKIHHLVGSYECMELTTLLLGEGEYGSIWRWSEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEISNLVSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESIDGISSLHNLKVLKLYGSRLPWDLNTVKELETLEHLEILTTTIDPRAKQFLSSHRLMSRSRLLQIFGSNIFSPDRQLESLSVSTDKLREFEIMCCSISEIKMGGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACEGEDSGIVPFPELKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGENGCIIHYKDSRWLKGVKWADEATKKRFLPSCEHRLER

HMMPanther: PTHR23155:SF120
5-886 PTHR23155:SF120,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

FSIPFDPCVNKVSQWLDMKGSYTHNLEKNLVALETTMEELKAKRDDLLRRLKREEDRGLQRLSEFQVWLNRVATVEDIIITLLRDRDVEIQRLCLCRFCSKNLTTSYRYGKSVFLRLREVEKLKGEVFGVITEQASTSAFEERPLQPTIVGQKKMLDKAWKHLMEDGTGIMGMYGMGGVGKTTLLTQLFNMFNKDKCGFDIGIWVVVSQEVNVEKIQDEIAQKLGLGGHEWTQRDISQKGVHLFNFLKNKKFVLFLDDLWDKVELANIGVPDPRTQKGCKLAFTSRSLNVCTSMGDEEPMEVQCLEENVAFDLFQKKVGQKTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRNAIHVLNSYAAEFIGMEDKILPLLKYSYDNLKGEHVKSSLLYCALYPEDAKIRKEDLIEHWICEEIIDGSEGIEKAEDKGYDIIGSLVRASLLMECVDLKGKSSVIMHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKVKNWNVVRRMSLMGNKIHHLVGSYECMELTTLLLGEGEYGSIWRWSEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEISNLVSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESIDGISSLHNLKVLKLYGSRLPWDLNTVKELETLEHLEILTTTIDPRAKQFLSSHRLMSRSRLLQIFGSNIFSPDRQLESLSVSTDKLREFEIMCCSISEIKMGGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACEGEDSGIVPFPELKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGENGCIIHYKDSRWLKGVKWADEATKKRFLPSCEHRLER

superfamily: SSF52540
136-382 SSF52540

TEQASTSAFEERPLQPTIVGQKKMLDKAWKHLMEDGTGIMGMYGMGGVGKTTLLTQLFNMFNKDKCGFDIGIWVVVSQEVNVEKIQDEIAQKLGLGGHEWTQRDISQKGVHLFNFLKNKKFVLFLDDLWDKVELANIGVPDPRTQKGCKLAFTSRSLNVCTSMGDEEPMEVQCLEENVAFDLFQKKVGQKTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRNAIHVLNSYAAEFI

Gene3D: G3DSA:3.40.50.300
156-272 G3DSA:3.40.50.300

QKKMLDKAWKHLMEDGTGIMGMYGMGGVGKTTLLTQLFNMFNKDKCGFDIGIWVVVSQEVNVEKIQDEIAQKLGLGGHEWTQRDISQKGVHLFNFLKNKKFVLFLDDLWDKVELANI

HMMPfam: PF00931
IPR002182
157-436 NB-ARC,NBS
NB-ARC

KKMLDKAWKHLMEDGTGIMGMYGMGGVGKTTLLTQLFNMFNKDKCGFDIGIWVVVSQEVNVEKIQDEIAQKLGLGGHEWTQRDISQKGVHLFNFLKNKKFVLFLDDLWDKVELANIGVPDPRTQKGCKLAFTSRSLNVCTSMGDEEPMEVQCLEENVAFDLFQKKVGQKTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRNAIHVLNSYAAEFIGMEDKILPLLKYSYDNLKGEHVKSSLLYCALYPEDAKIRKEDLIEHWICEEIID

FPrintScan: PR00364
IPR000767
174-189 DISEASERSIST
Disease resistance protein

IMGMYGMGGVGKTTLL

FPrintScan: PR00364
IPR000767
250-264 DISEASERSIST
Disease resistance protein

FLKNKKFVLFLDDLW

FPrintScan: PR00364
IPR000767
344-358 DISEASERSIST
Disease resistance protein

CCGLPLALNVIGETM

superfamily: SSF52058
474-839 SSF52058,LRR

IMHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKVKNWNVVRRMSLMGNKIHHLVGSYECMELTTLLLGEGEYGSIWRWSEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEISNLVSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESIDGISSLHNLKVLKLYGSRLPWDLNTVKELETLEHLEILTTTIDPRAKQFLSSHRLMSRSRLLQIFGSNIFSPDRQLESLSVSTDKLREFEIMCCSISEIKMGGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACEGEDSGIVPFPELKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLP

Gene3D: G3DSA:3.80.10.10
506-671 G3DSA:3.80.10.10

REIPKVKNWNVVRRMSLMGNKIHHLVGSYECMELTTLLLGEGEYGSIWRWSEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEISNLVSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESIDGISSLHNLKVLKLYGSRLPWDLNTVKELETLEHLEIL

FPrintScan: PR00364
IPR000767
567-583 DISEASERSIST
Disease resistance protein

NCMPKLAVLDLSHNQSL

HMMPfam: PF12799
570-610 LRR_4,Leucine Rich repeats (2 copies)

PKLAVLDLSHNQSLFELPEEISNLVSLKYLNLSHTGIRHLS

Gene3D: G3DSA:3.80.10.10
705-840 G3DSA:3.80.10.10

PDRQLESLSVSTDKLREFEIMCCSISEIKMGGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACEGEDSGIVPFPELKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPL






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Blast

Blast matches against Reference R-Genes. Show


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