PRGDB00046952 (disease resistance protein (CC-NBS-LRR class), putative)

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disease resistance protein (CC-NBS-LRR class), putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 18407062 (NM_104800)
Gene Class CNL
Domain Type LRR, NBS, LRR, LRR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana disease resistance protein (CC-NBS-LRR class), putative (AT1G61190) mRNA, complete cds.

DNA Sequence

ATGGGAAATTTTGTGTGTATAGAAATTTCTGGTGATCAAATGCTGGATCGTATCATTAGATGCTTATGTGGTAAAGGTTATATTCGAAACCTCGAGAAGAATCTCAGAGCTCTGCAGAGGGAAATGGAAGATCTAAGAGCAACTCAACATGAGGTACAGAACAAGGTAGCGAGAGAGGAGTCACGCCATCAACAAAGGCTTGAAGCTGTCCAGGTATGGCTTGACCGTGTCAATAGCATTGATATAGAGTGCAAAGATCTGCTAAGTGTTAGTCCCGTTGAGCTTCAAAAGTTGTGTCTCTGCGGTTTATGTTCAAAATATGTATGTTCAAGCTACAAATATGGGAAAAGGGTGTTTTTGTTATTGGAAGAGGTTACGAAACTAAAATCGGAGGGAAATTTTGACGAGGTTTCTCAGCCGCCTCCAAGATCTGAAGTTGAAGAGAGGCCTACTCAGCCTACGATTGGTCAAGAAGAAATGCTCAAAAAGGCATGGAACCGCCTTATGGAAGATGGAGTCGGAATCATGGGTCTGCACGGTATGGGTGGTGTAGGCAAAACAACCCTTTTCAAGAAAATCCACAATAAGTTCGCTGAAACAGGTGGTACGTTTGACATTGTGATCTGGATCGTGGTGTCTCAAGGCGCAAAGCTTTCAAAGCTTCAAGAAGATATTGCAGAGAAATTACACCTTTGTGACGACCTGTGGAAGAACAAGAATGAAAGTGATAAGGCCACCGATATACACAGAGTTTTAAAGGGAAAGAGATTTGTTTTGATGCTAGATGATATATGGGAGAAAGTGGATTTAGAGGCCATTGGTATTCCCTATCCGAGTGAAGTAAATAAATGCAAAGTAGCATTCACCACCCGAGATCAAAAAGTTTGTGGGCAGATGGGGGATCATAAGCCGATGCAAGTCAAATGTTTGGAACCAGAGGATGCATGGGAGTTGTTCAAAAACAAGGTCGGAGACAACACATTACGTAGTGATCCTGTTATTGTGGGGTTGGCAAGAGAGGTCGCTCAAAAATGTCGTGGTCTGCCATTGGCGCTCAGTTGCATTGGTGAGACAATGGCATCTAAAACTATGGTACAAGAATGGGAGCATGCAATCGATGTTTTGACTAGATCCGCTGCAGAGTTTTCTGACATGCAAAACAAAATTCTTCCGATTCTCAAGTACAGCTACGATAGCTTGGAGGATGAACATATCAAGTCGTGTTTCCTATATTGTGCTCTGTTTCCCGAAGATGATAAGATAGATACCAAAACCTTGATAAACAAATGGATCTGCGAAGGATTCATCGGAGAAGACCAAGTTATAAAAAGAGCGAGGAATAAGGGTTATGAGATGCTCGGTACCCTTATCCGTGCTAATTTACTAACAAATGATCGTGGGTTCGTGAAATGGCATGTTGTGATGCATGACGTGGTTCGTGAAATGGCTTTGTGGATTGCATCCGATTTTGGGAAACAGAAAGAGAATTATGTTGTGCGAGCAAGAGTCGGGTTACATGAAATACCAAAAGTCAAGGATTGGGGAGCTGTAAGAAGAATGTCACTAATGATGAATGAAATTGAAGAGATAACATGCGAGTCCAAGTGTTCTGAACTTACAACTTTGTTCCTTCAAAGTAATCAATTGAAGAATCTATCAGGTGAATTCATTCGGTATATGCAAAAGCTAGTTGTTTTGGATCTTTCACATAATCCTGACTTCAATGAACTTCCAGAGCAGATATCGGGGCTGGTCTCGTTGCAGTATCTTGACTTGTCGTGGACAAGAATAGAGCAACTGCCTGTTGGTCTCAAAGAGTTGAAAAAGCTAATTTTTCTGAATTTATGTTTCACCGAGCGACTTTGTAGTATCAGTGGGATATCAAGGTTGTTGAGTTTAAGATGGTTGAGTCTGCGAGAGTCTAATGTTCATGGAGATGCTAGCGTATTGAAGGAGCTGCAGCAATTGGAGAATCTACAAGATCTACGCATAACTGAATCCGCGGAGTTAATTAGTTTGGATCAAAGGTTGGCGAAGTTAATCTCTGTTCTGCGTATTGAGGGGTTTCTTCAAAAGCCATTCGATTTATCATTCCTGGCGAGTATGGAGAATCTTTATGGGCTACTGGTGGAAAATAGTTATTTCTCGGAGATTAATATAAAGTGCAGAGAAAGCGAGACAGAATCGTCTTATTTACACATCAATCCGAAAATTCCATGCTTTACCAACCTCACAGGACTGATTATAATGAAGTGCCATAGCATGAAGGATCTGACTTGGATATTGTTTGCTCCAAATCTTGTCAACCTAGACATTCGTGATTCAAGAGAAGTGGGAGAAATAATAAACAAAGAGAAAGCAATCAATCTTACAAGTATTATTACACCATTTCAGAAACTAGAAAGGTTGTTTTTGTATGGTTTGCCGAAGCTGGAGAGTATCTACTGGAGTCCTCTCCCCTTTCCGCTTTTGTCGAACATAGTTGTTAAATACTGTCCAAAGCTGAGAAAGCTTCCATTAAATGCTACAAGTGTCCCACTAGTTGAAGAATTTGAAATACGTATGGATCCTCCAGAACAGGAAAATGAGCTTGAATGGGAGGACGAAGATACCAAAAATCGATTCTTGCCTTCAATCAAACCGCTAGTACGTCGTCTAAAGATCCATTACTCAGGAATGGGATTCCTCAATGTCAAAAATCAGAATCCACGCTTCTTCTTCTATTGCTTTATCTATCTTCTTGTAGTGCATTTGGATTGTATAATTGATTTGCATTCTGACACTTCTGGAATGTGTTGTGTTGTTCACTTGGATTATGTTTTTCATTTTCCTTTTGTATTCCCTAAAACGTTTTGCATCCTTTTCAGACTACATTTTTACACAATCAAAAGTTTATGCGTTTAG


Protein sequences

Name Description Sequence
disease resistance protein (CC-NBS-LRR class), putative disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana].

MGNFVCIEISGDQMLDRIIRCLCGKGYIRNLEKNLRALQREMEDLRATQHEVQNKVAREESRHQQRLEAVQVWLDRVNSIDIECKDLLSVSPVELQKLCLCGLCSKYVCSSYKYGKRVFLLLEEVTKLKSEGNFDEVSQPPPRSEVEERPTQPTIGQEEMLKKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAETGGTFDIVIWIVVSQGAKLSKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRDQKVCGQMGDHKPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVGLAREVAQKCRGLPLALSCIGETMASKTMVQEWEHAIDVLTRSAAEFSDMQNKILPILKYSYDSLEDEHIKSCFLYCALFPEDDKIDTKTLINKWICEGFIGEDQVIKRARNKGYEMLGTLIRANLLTNDRGFVKWHVVMHDVVREMALWIASDFGKQKENYVVRARVGLHEIPKVKDWGAVRRMSLMMNEIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSHNPDFNELPEQISGLVSLQYLDLSWTRIEQLPVGLKELKKLIFLNLCFTERLCSISGISRLLSLRWLSLRESNVHGDASVLKELQQLENLQDLRITESAELISLDQRLAKLISVLRIEGFLQKPFDLSFLASMENLYGLLVENSYFSEINIKCRESETESSYLHINPKIPCFTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREVGEIINKEKAINLTSIITPFQKLERLFLYGLPKLESIYWSPLPFPLLSNIVVKYCPKLRKLPLNATSVPLVEEFEIRMDPPEQENELEWEDEDTKNRFLPSIKPLVRRLKIHYSGMGFLNVKNQNPRFFFYCFIYLLVVHLDCIIDLHSDTSGMCCVVHLDYVFHFPFVFPKTFCILFRLHFYTIKSLCV

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
6-899 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

CIEISGDQMLDRIIRCLCGKGYIRNLEKNLRALQREMEDLRATQHEVQNKVAREESRHQQRLEAVQVWLDRVNSIDIECKDLLSVSPVELQKLCLCGLCSKYVCSSYKYGKRVFLLLEEVTKLKSEGNFDEVSQPPPRSEVEERPTQPTIGQEEMLKKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAETGGTFDIVIWIVVSQGAKLSKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRDQKVCGQMGDHKPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVGLAREVAQKCRGLPLALSCIGETMASKTMVQEWEHAIDVLTRSAAEFSDMQNKILPILKYSYDSLEDEHIKSCFLYCALFPEDDKIDTKTLINKWICEGFIGEDQVIKRARNKGYEMLGTLIRANLLTNDRGFVKWHVVMHDVVREMALWIASDFGKQKENYVVRARVGLHEIPKVKDWGAVRRMSLMMNEIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSHNPDFNELPEQISGLVSLQYLDLSWTRIEQLPVGLKELKKLIFLNLCFTERLCSISGISRLLSLRWLSLRESNVHGDASVLKELQQLENLQDLRITESAELISLDQRLAKLISVLRIEGFLQKPFDLSFLASMENLYGLLVENSYFSEINIKCRESETESSYLHINPKIPCFTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREVGEIINKEKAINLTSIITPFQKLERLFLYGLPKLESIYWSPLPFPLLSNIVVKYCPKLRKLPLNATSVPLVEEFEIRMDPPEQENELEWEDEDTKNRFLPSIKPLVRRLKIHYSGMGFLNVK

HMMPanther: PTHR23155:SF109
6-899 PTHR23155:SF109,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

CIEISGDQMLDRIIRCLCGKGYIRNLEKNLRALQREMEDLRATQHEVQNKVAREESRHQQRLEAVQVWLDRVNSIDIECKDLLSVSPVELQKLCLCGLCSKYVCSSYKYGKRVFLLLEEVTKLKSEGNFDEVSQPPPRSEVEERPTQPTIGQEEMLKKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAETGGTFDIVIWIVVSQGAKLSKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRDQKVCGQMGDHKPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVGLAREVAQKCRGLPLALSCIGETMASKTMVQEWEHAIDVLTRSAAEFSDMQNKILPILKYSYDSLEDEHIKSCFLYCALFPEDDKIDTKTLINKWICEGFIGEDQVIKRARNKGYEMLGTLIRANLLTNDRGFVKWHVVMHDVVREMALWIASDFGKQKENYVVRARVGLHEIPKVKDWGAVRRMSLMMNEIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSHNPDFNELPEQISGLVSLQYLDLSWTRIEQLPVGLKELKKLIFLNLCFTERLCSISGISRLLSLRWLSLRESNVHGDASVLKELQQLENLQDLRITESAELISLDQRLAKLISVLRIEGFLQKPFDLSFLASMENLYGLLVENSYFSEINIKCRESETESSYLHINPKIPCFTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREVGEIINKEKAINLTSIITPFQKLERLFLYGLPKLESIYWSPLPFPLLSNIVVKYCPKLRKLPLNATSVPLVEEFEIRMDPPEQENELEWEDEDTKNRFLPSIKPLVRRLKIHYSGMGFLNVK

superfamily: SSF52540
136-381 SSF52540

EVSQPPPRSEVEERPTQPTIGQEEMLKKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAETGGTFDIVIWIVVSQGAKLSKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRDQKVCGQMGDHKPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVGLAREVAQKCRGLPLALSCIGETMASKTMVQEWEHAIDVLTRSAAE

HMMPfam: PF00931
IPR002182
157-439 NB-ARC,NBS
NB-ARC

QEEMLKKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAETGGTFDIVIWIVVSQGAKLSKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRDQKVCGQMGDHKPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVGLAREVAQKCRGLPLALSCIGETMASKTMVQEWEHAIDVLTRSAAEFSDMQNKILPILKYSYDSLEDEHIKSCFLYCALFPEDDKIDTKTLINKWICEGFIGED

Gene3D: G3DSA:3.40.50.300
163-266 G3DSA:3.40.50.300

KAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAETGGTFDIVIWIVVSQGAKLSKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIWE

FPrintScan: PR00364
IPR000767
175-190 DISEASERSIST
Disease resistance protein

IMGLHGMGGVGKTTLF

FPrintScan: PR00364
IPR000767
251-265 DISEASERSIST
Disease resistance protein

VLKGKRFVLMLDDIW

FPrintScan: PR00364
IPR000767
345-359 DISEASERSIST
Disease resistance protein

CRGLPLALSCIGETM

superfamily: SSF52058
474-856 SSF52058,LRR

VMHDVVREMALWIASDFGKQKENYVVRARVGLHEIPKVKDWGAVRRMSLMMNEIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSHNPDFNELPEQISGLVSLQYLDLSWTRIEQLPVGLKELKKLIFLNLCFTERLCSISGISRLLSLRWLSLRESNVHGDASVLKELQQLENLQDLRITESAELISLDQRLAKLISVLRIEGFLQKPFDLSFLASMENLYGLLVENSYFSEINIKCRESETESSYLHINPKIPCFTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREVGEIINKEKAINLTSIITPFQKLERLFLYGLPKLESIYWSPLPFPLLSNIVVKYCPKLRKLPLNATSVPLVEEFEIRMD

Gene3D: G3DSA:3.80.10.10
504-664 G3DSA:3.80.10.10

GLHEIPKVKDWGAVRRMSLMMNEIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSHNPDFNELPEQISGLVSLQYLDLSWTRIEQLPVGLKELKKLIFLNLCFTERLCSISGISRLLSLRWLSLRESNVHGDASVLKELQQLENLQDLRI

HMMPfam: PF13855
538-597 LRR_8,Leucine rich repeat

ELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSHNPDFNELPEQISGLVSLQYLDLSWTRI

FPrintScan: PR00364
IPR000767
558-574 DISEASERSIST
Disease resistance protein

RYMQKLVVLDLSHNPDF

Gene3D: G3DSA:3.80.10.10
738-837 G3DSA:3.80.10.10

IPCFTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREVGEIINKEKAINLTSIITPFQKLERLFLYGLPKLESIYWSPLPFPLLSNIVVKYCPKLRK






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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