PRGDB00046953 (disease resistance protein (CC-NBS-LRR class), putative)
| disease resistance protein (CC-NBS-LRR class), putative | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 145336920 (NM_104799) |
| Gene Class | CNL |
| Domain Type | LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, NBS, Others |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGGGGAGTTGTTTTTCTCTTCAAGTTAGTGATCAAACACTGAATCGTATCTTTAATTGCTTAATTGGTAAAAGTTATATTCGAACCCTCGAGAAGAATCTCAGAGCTCTGCAGAGGGAAATGGAAGATCTCAGAGCAATTCAACATGAGGTACAAAACAAGGTAGCTAGAGACGAGGCACGCCATCAACGAAGGCTTGAAGCTGTCCAGGTATGGCTTGACCGTGTCAATAGCGTTGATATAGAGTGCAAAGATCTGCTAAGTGTTACTCCTGTTGAGCTTCAAAAGTTGTGTCTATGCGGTTTGTGTTCAAAATATGTATGTTCAAGCTACAAATATGGGAAAAAGGTATTCTTGTTACTGGAAGAGGTTAAGAAACTAAACTCGGAGGGAAATTTTGACGAGGTTTCTCAGCCGCCTCCAAGGTCTGAAGTTGAAGAGAGGCCTACTCAGCCTACGATTGGTCAGGAAGACATGCTCGAAAAGGCATGGAACCGCCTTATGGAAGATGGAGTCGGAATCATGGGTCTGCACGGTATGGGTGGTGTAGGCAAAACAACCCTTTTCAAGAAAATCCACAACAAGTTCGCTGAAATAGGTGGTACGTTTGACATTGTGATCTGGATCGTGGTGTCTAAAGGCGTAATGATTTCAAAGCTTCAAGAAGATATTGCAGAGAAACTACACCTTTGTGACGACCTGTGGAAGAACAAGAATGAAAGTGATAAGGCCACTGATATACACAGAGTTTTAAAGGGCAAGAGATTTGTTTTGATGCTAGATGATATATGGGAGAAAGTGGATTTAGAGGCCATTGGTATTCCCTATCCGAGTGAAGTAAATAAATGCAAAGTAGCATTCACGACACGTTCTCGGGAAGTTTGTGGGGAGATGGGGGATCATAAGCCGATGCAAGTCAACTGTTTGGAACCAGAGGATGCATGGGAGCTGTTCAAAAACAAGGTCGGAGACAACACATTAAGTAGTGATCCTGTTATTGTGGAGTTGGCAAGAGAGGTCGCTCAAAAATGTCGTGGTCTGCCATTGGCGCTCAACGTCATTGGTGAGACAATGTCATCTAAAACTATGGTACAAGAATGGGAGCATGCAATCCATGTTTTTAATACATCCGCTGCAGAGTTTTCTGACATGCAAAACAAAATTCTTCCGATTCTCAAGTACAGCTACGATAGCTTGGGGGATGAACATATCAAGTCGTGTTTCCTATATTGTGCTCTGTTTCCTGAAGATGGTGAGATATATAACGAAAAGTTGATAGACTACTGGATATGCGAAGGATTCATCGGAGAAGACCAAGTTATAAAAAGAGCGAGGAATAAGGGTTATGCGATGCTCGGTACCCTTACCCGTGCAAATTTGCTAACAAAGGTTGGTACATATTATTGTGTGATGCATGACGTGGTTCGTGAAATGGCTTTATGGATTGCTTCCGATTTTGGGAAACAGAAAGAGAATTTTGTTGTGCAAGCAGGAGTCGGGTTACATGAAATACCAAAAGTCAAGGATTGGGGAGCTGTAAGAAAGATGTCATTAATGGATAATGATATTGAAGAGATAACATGCGAGTCCAAGTGTTCTGAACTTACAACTTTGTTCCTTCAAAGTAATAAATTGAAGAATCTACCAGGTGCATTCATTCGGTATATGCAAAAGCTAGTTGTTTTGGATCTTTCATATAATCGTGACTTCAATAAACTTCCAGAGCAGATATCGGGGCTGGTCTCGTTGCAGTTTCTTGACTTGTCGAATACAAGTATAGAGCACATGCCTATTGGTCTCAAAGAGTTGAAAAAGCTAACTTTCCTGGATTTGACTTATACTGATCGACTTTGTAGTATCAGTGGGATATCAAGGTTGTTGAGTTTAAGATTGTTGAGACTGCTAGGGTCTAAAGTTCATGGAGATGCTAGCGTATTGAAGGAGCTGCAGCAATTGCAGAATCTACAAGAGCTAGCCATAACTGTATCCGCGGAGTTAATTAGTTTGGATCAAAGGTTGGCGAAGTTAATCTCTAATCTTTGTATTGAAGGGTTTCTTCAAAAGCCATTCGATTTATCATTCTTGGCGAGTATGGAGAATCTTAGTTCCCTACGGGTGGAAAATAGTTATTTCTCGGAGATAAAGTGCAGAGAAAGCGAGACAGAATCGTCTTATTTACGCATCAATCCGAAAATTCCATGCTTTACCAACCTCTCACGACTGGAGATAATGAAGTGCCATAGCATGAAGGATCTGACTTGGATATTGTTTGCTCCAAATCTTGTCGTGCTACTCATTGAAGATTCAAGAGAAGTGGGAGAAATAATAAACAAAGAGAAAGCAACCAATCTTACAAGTATTACACCATTTCTGAAACTAGAATGGTTGATTTTGTATAATTTGCCGAAGCTGGAGAGTATCTACTGGAGTCCTCTCCCCTTTCCGGTTTTGTTGACCATGGATGTTTCAAACTGTCCAAAGCTGAGAAAGCTTCCATTAAATGCTACAAGTGTTTCAAAAGTTGAAGAATTTGAAATACATATGTATCCTCCTCCAGAACAGGAAAATGAGCTTGAATGGGAGGACGATGATACCAAAAATCGATTCTTGCCTTCAATCAAACCGTACAAGTACTTCGTCTACCCAGGAATGAGTTTCCTCACTGTCTAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein (CC-NBS-LRR class), putative | disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana]. | MGSCFSLQVSDQTLNRIFNCLIGKSYIRTLEKNLRALQREMEDLRAIQHEVQNKVARDEARHQRRLEAVQVWLDRVNSVDIECKDLLSVTPVELQKLCLCGLCSKYVCSSYKYGKKVFLLLEEVKKLNSEGNFDEVSQPPPRSEVEERPTQPTIGQEDMLEKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSKGVMISKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRSREVCGEMGDHKPMQVNCLEPEDAWELFKNKVGDNTLSSDPVIVELAREVAQKCRGLPLALNVIGETMSSKTMVQEWEHAIHVFNTSAAEFSDMQNKILPILKYSYDSLGDEHIKSCFLYCALFPEDGEIYNEKLIDYWICEGFIGEDQVIKRARNKGYAMLGTLTRANLLTKVGTYYCVMHDVVREMALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCESKCSELTTLFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMPIGLKELKKLTFLDLTYTDRLCSISGISRLLSLRLLRLLGSKVHGDASVLKELQQLQNLQELAITVSAELISLDQRLAKLISNLCIEGFLQKPFDLSFLASMENLSSLRVENSYFSEIKCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPNLVVLLIEDSREVGEIINKEKATNLTSITPFLKLEWLILYNLPKLESIYWSPLPFPVLLTMDVSNCPKLRKLPLNATSVSKVEEFEIHMYPPPEQENELEWEDDDTKNRFLPSIKPYKYFVYPGMSFLTV |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155:SF117 | 5-889 | DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS), PUTATIVE,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS) | FSLQVSDQTLNRIFNCLIGKSYIRTLEKNLRALQREMEDLRAIQHEVQNKVARDEARHQRRLEAVQVWLDRVNSVDIECKDLLSVTPVELQKLCLCGLCSKYVCSSYKYGKKVFLLLEEVKKLNSEGNFDEVSQPPPRSEVEERPTQPTIGQEDMLEKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSKGVMISKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRSREVCGEMGDHKPMQVNCLEPEDAWELFKNKVGDNTLSSDPVIVELAREVAQKCRGLPLALNVIGETMSSKTMVQEWEHAIHVFNTSAAEFSDMQNKILPILKYSYDSLGDEHIKSCFLYCALFPEDGEIYNEKLIDYWICEGFIGEDQVIKRARNKGYAMLGTLTRANLLTKVGTYYCVMHDVVREMALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCESKCSELTTLFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMPIGLKELKKLTFLDLTYTDRLCSISGISRLLSLRLLRLLGSKVHGDASVLKELQQLQNLQELAITVSAELISLDQRLAKLISNLCIEGFLQKPFDLSFLASMENLSSLRVENSYFSEIKCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPNLVVLLIEDSREVGEIINKEKATNLTSITPFLKLEWLILYNLPKLESIYWSPLPFPVLLTMDVSNCPKLRKLPLNATSVSKVEEFEIHMYPPPEQENELEWEDDDTKNRFLPSIKPYKYFVYPGMSFLTV |
| HMMPanther: PTHR23155 | 5-889 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | FSLQVSDQTLNRIFNCLIGKSYIRTLEKNLRALQREMEDLRAIQHEVQNKVARDEARHQRRLEAVQVWLDRVNSVDIECKDLLSVTPVELQKLCLCGLCSKYVCSSYKYGKKVFLLLEEVKKLNSEGNFDEVSQPPPRSEVEERPTQPTIGQEDMLEKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSKGVMISKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRSREVCGEMGDHKPMQVNCLEPEDAWELFKNKVGDNTLSSDPVIVELAREVAQKCRGLPLALNVIGETMSSKTMVQEWEHAIHVFNTSAAEFSDMQNKILPILKYSYDSLGDEHIKSCFLYCALFPEDGEIYNEKLIDYWICEGFIGEDQVIKRARNKGYAMLGTLTRANLLTKVGTYYCVMHDVVREMALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCESKCSELTTLFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMPIGLKELKKLTFLDLTYTDRLCSISGISRLLSLRLLRLLGSKVHGDASVLKELQQLQNLQELAITVSAELISLDQRLAKLISNLCIEGFLQKPFDLSFLASMENLSSLRVENSYFSEIKCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPNLVVLLIEDSREVGEIINKEKATNLTSITPFLKLEWLILYNLPKLESIYWSPLPFPVLLTMDVSNCPKLRKLPLNATSVSKVEEFEIHMYPPPEQENELEWEDDDTKNRFLPSIKPYKYFVYPGMSFLTV |
| Coil: coil | 27-55 | coiled-coil | IRTLEKNLRALQREMEDLRAIQHEVQNKV |
| Seg: seg | 115-127 | seg | KKVFLLLEEVKKL |
| superfamily: SSF52540 | 135-369 | P-loop containing nucleoside triphosphate hydrolases | EVSQPPPRSEVEERPTQPTIGQEDMLEKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSKGVMISKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRSREVCGEMGDHKPMQVNCLEPEDAWELFKNKVGDNTLSSDPVIVELAREVAQKCRGLPLALNVIGETMSSKTMVQEWEH |
| HMMPfam: PF00931 IPR002182
|
156-438 | NB-ARC,NBS NB-ARC
|
QEDMLEKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSKGVMISKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRSREVCGEMGDHKPMQVNCLEPEDAWELFKNKVGDNTLSSDPVIVELAREVAQKCRGLPLALNVIGETMSSKTMVQEWEHAIHVFNTSAAEFSDMQNKILPILKYSYDSLGDEHIKSCFLYCALFPEDGEIYNEKLIDYWICEGFIGED |
| Gene3D: G3DSA:3.40.50.300 | 164-264 | no description | WNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSKGVMISKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIW |
| Seg: seg | 171-184 | seg | GVGIMGLHGMGGVG |
| FPrintScan: PR00364 IPR000767
|
174-189 | DISEASERSIST Disease resistance protein
|
IMGLHGMGGVGKTTLF |
| FPrintScan: PR00364 IPR000767
|
250-264 | DISEASERSIST Disease resistance protein
|
VLKGKRFVLMLDDIW |
| FPrintScan: PR00364 IPR000767
|
344-358 | DISEASERSIST Disease resistance protein
|
CRGLPLALNVIGETM |
| superfamily: SSF52058 | 470-848 | L domain-like,LRR | VMHDVVREMALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCESKCSELTTLFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMPIGLKELKKLTFLDLTYTDRLCSISGISRLLSLRLLRLLGSKVHGDASVLKELQQLQNLQELAITVSAELISLDQRLAKLISNLCIEGFLQKPFDLSFLASMENLSSLRVENSYFSEIKCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPNLVVLLIEDSREVGEIINKEKATNLTSITPFLKLEWLILYNLPKLESIYWSPLPFPVLLTMDVSNCPKLRKLPLNATSVSKVEEFEIHM |
| Gene3D: G3DSA:3.80.10.10 | 501-834 | no description | LHEIPKVKDWGAVRKMSLMDNDIEEITCESKCSELTTLFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMPIGLKELKKLTFLDLTYTDRLCSISGISRLLSLRLLRLLGSKVHGDASVLKELQQLQNLQELAITVSAELISLDQRLAKLISNLCIEGFLQKPFDLSFLASMENLSSLRVENSYFSEIKCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPNLVVLLIEDSREVGEIINKEKATNLTSITPFLKLEWLILYNLPKLESIYWSPLPFPVLLTMDVSNCPKLRKLPLN |
| HMMPfam: PF13855 | 534-593 | LRR_8,Leucine rich repeat | ELTTLFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSI |
| FPrintScan: PR00364 IPR000767
|
554-570 | DISEASERSIST Disease resistance protein
|
RYMQKLVVLDLSYNRDF |
| Seg: seg | 616-637 | seg | RLCSISGISRLLSLRLLRLLGS |
| Seg: seg | 648-658 | seg | ELQQLQNLQEL |
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