PRGDB00046955 (disease resistance protein (CC-NBS-LRR class), putative)

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disease resistance protein (CC-NBS-LRR class), putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 18407799 (NM_105015)
Gene Class CNL
Domain Type LRR, NBS, LRR, LRR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana disease resistance protein (CC-NBS-LRR class), putative (AT1G63360) mRNA, complete cds.

DNA Sequence

ATGGGTATTTCTTTCTCGATACCCTTTGATCCGTGTGTAAATAAAGTCTCTCAATGGCTAGACATGAAAGTAAGTTATACTCACAATCTCGAGAAGAATCTCGCAGCTTTGGAGAAAACCATGAAAGAGCTCAAGGCTAAGCGGGATGATTTGGAAAGAAGGCTCAAAAGAGAGGAGGCTAGAGGTCTACAAAGGCTTTCCGAATTCCAGGTATGGCTTGATAGTGTTGCGACTGTCGAAGACATAATCATTACTCTTCTTAGAGATAGAAATGTTGAAATTCAAAGGCTGTGTCTTTGCCGGTTTTGCTCTAAGAGTTTAACGAGGAGCTATCGTTATGGGAAAAGTGTTTTCTTGAGGTTGAGGGAGGTTGAGAAACTCAAAGGTGAAGTTTTTGGAGTGATAACCGAGCAAGCTTCAACATCTGCGTTTGAGGAACGACCTCTTCAACCGACAATCGTTGGTCAAGACACAATGCTCGATAAGGCAGGGAAACATCTCATGGAAGATGGAGTTGGTATTATGGGTATGTACGGTATGGGCGGTGTAGGGAAGACAACACTTCTCACTCAGCTCTACAATATGTTCAATAAGGATAAGTGTGGATTTGATATTGGCATTTGGGTTGTCGTGTCTCAAGAGTTTCATGTGGAGAAGGTTCAAGATGAAATCGCTCAAAAGCTTGGTCTTGGTGGAGATGAGTGGACACAGAAAGATAAAAGTCAAAAGGGGATTTGTTTATACAATATCTTGAGGGAAAAGAGTTTTGTGTTGTTTTTAGATGACATATGGGAAAAGGTGGATTTAGCTGAGATCGGAGTTCCGGATCCAAGAACCAAAAAAGGACGTAAATTGGCATTTACGACTCGGTCCCAAGAGGTATGTGCACGCATGGGGGTCGAACATCCAATGGAAGTCCAATGCTTGGAAGAGAATGTGGCATTTGATTTGTTCCAAAAGAAGGTTGGACAAACAACACTTGGAAGCGATCCGGGGATCCCCCAACTTGCAAGAATAGTTGCGAAAAAATGTTGTGGCCTACCATTGGCGCTCAACGTCATAGGCGAGACCATGTCATGCAAAAGGACGATACAAGAATGGCGTCACGCTATACATGTTTTGAATTCATACGCTGCAGAGTTTATAGGCATGGAGGATAAGGTTCTTCCGCTTTTGAAGTATAGCTACGATAACCTTAAGGGGGAGCAAGTCAAATCGAGTTTGTTGTATTGTGCTTTATATCCAGAAGATGCGAAAATTCTGAAAGAAGATTTGATAGAGCATTGGATATGCGAGGAAATTATAGATGGAAGTGAAGGTATAGAAAAGGCTGAGGACAAGGGTTATGAGATTATAGGTTGTCTTGTTCGCGCATCATTGTTGATGGAGTGGGATGATGGGGATGGACGACGTGCTGTGTGTATGCATGACGTTGTTCGTGAAATGGCCTTATGGATCGCTTCTGAACTGGGAATACAAAAGGAGGCCTTCATTGTGCGTGCAGGTGTTGGCGTACGTGAAATTCCAAAGATTAAGAATTGGAATGTTGTGAGAAGGATGTCATTGATGGAGAACAAGATTCATCATCTCGTTGGTAGTTATGAATGTATGGAACTCACAACTTTGCTCCTGGGAAAGCGAGAATATGGAAGTATTCGGAGTCAATTAAAAACGATCTCGAGTGAATTCTTCAATTGCATGCCAAAGCTAGCTGTTTTGGATCTATCGCATAATAAAAGTCTCTTTGAATTGCCGGAAGAAATATCAAATCTAGTTTCCTTGAAATATCTCAACTTGTTATATACTGAGATAAGTCATTTGCCTAAGGGTATACAAGAGTTGAAGAAAATAATTCACTTGAATTTGGAGTATACAAGGAAGCTTGAGAGCATTACTGGGATATCAAGTCTGCATAACTTGAAAGTTCTGAAATTATTTCGTTCTAGATTACCATGGGATCTCAACACAGTGAAGGAGCTGGAAACTTTGGAACATTTAGAAATTTTAACCACAACTATCGATCCAAGAGCGAAGCAGTTTTTGAGCTCCCATAGGTTGCTGAGTCATTCACGATTGCTAGAGATCTATGGATCTTCTGTATCCTCACTAAATAGACATCTAGAATCACTTTCAGTATCTACGGACAAGCTTCGCGAATTTCAAATTAAGAGCTGCAGTATCTCTGAGATTAAGATGGGAGGGATATGCAACTTCTTGAGCCTCGTCGATGTGAATATATTCAATTGTGAAGGCTTGAGGGAATTGACGTTTCTGATCTTTGCTCCAAAGATTAGATCTCTTTCTGTTTGGCATGCAAAAGACCTAGAAGATATAATAAACGAAGAGAAAGCTTGTGAAGGTGAAGAATCGGGGATTCTTCCTTTTCCAGAGCTGAATTTTCTTACTTTACATGATCTACCGAAGCTGAAGAAGATCTATTGGAGACCTCTACCCTTTCTATGTCTAGAAGAAATCAATATAAGGGAATGTCCAAATCTGAGAAAGCTTCCACTCGATTCCACAAGTGGCAAGCAAGGTGAAAATGGATGCATCATACGTAACAAAGATTCACGTTGGTTTGAAGGTGTGAAATGGGCAGACGAAGCTACGAAAAAACGCTTCTTACCTTCATGCCAATTGATTTCTCTTAAATGA


Protein sequences

Name Description Sequence
disease resistance protein (CC-NBS-LRR class), putative disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana].

MGISFSIPFDPCVNKVSQWLDMKVSYTHNLEKNLAALEKTMKELKAKRDDLERRLKREEARGLQRLSEFQVWLDSVATVEDIIITLLRDRNVEIQRLCLCRFCSKSLTRSYRYGKSVFLRLREVEKLKGEVFGVITEQASTSAFEERPLQPTIVGQDTMLDKAGKHLMEDGVGIMGMYGMGGVGKTTLLTQLYNMFNKDKCGFDIGIWVVVSQEFHVEKVQDEIAQKLGLGGDEWTQKDKSQKGICLYNILREKSFVLFLDDIWEKVDLAEIGVPDPRTKKGRKLAFTTRSQEVCARMGVEHPMEVQCLEENVAFDLFQKKVGQTTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRHAIHVLNSYAAEFIGMEDKVLPLLKYSYDNLKGEQVKSSLLYCALYPEDAKILKEDLIEHWICEEIIDGSEGIEKAEDKGYEIIGCLVRASLLMEWDDGDGRRAVCMHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKIKNWNVVRRMSLMENKIHHLVGSYECMELTTLLLGKREYGSIRSQLKTISSEFFNCMPKLAVLDLSHNKSLFELPEEISNLVSLKYLNLLYTEISHLPKGIQELKKIIHLNLEYTRKLESITGISSLHNLKVLKLFRSRLPWDLNTVKELETLEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQIKSCSISEIKMGGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIINEEKACEGEESGILPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATKKRFLPSCQLISLK

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
5-881 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

FSIPFDPCVNKVSQWLDMKVSYTHNLEKNLAALEKTMKELKAKRDDLERRLKREEARGLQRLSEFQVWLDSVATVEDIIITLLRDRNVEIQRLCLCRFCSKSLTRSYRYGKSVFLRLREVEKLKGEVFGVITEQASTSAFEERPLQPTIVGQDTMLDKAGKHLMEDGVGIMGMYGMGGVGKTTLLTQLYNMFNKDKCGFDIGIWVVVSQEFHVEKVQDEIAQKLGLGGDEWTQKDKSQKGICLYNILREKSFVLFLDDIWEKVDLAEIGVPDPRTKKGRKLAFTTRSQEVCARMGVEHPMEVQCLEENVAFDLFQKKVGQTTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRHAIHVLNSYAAEFIGMEDKVLPLLKYSYDNLKGEQVKSSLLYCALYPEDAKILKEDLIEHWICEEIIDGSEGIEKAEDKGYEIIGCLVRASLLMEWDDGDGRRAVCMHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKIKNWNVVRRMSLMENKIHHLVGSYECMELTTLLLGKREYGSIRSQLKTISSEFFNCMPKLAVLDLSHNKSLFELPEEISNLVSLKYLNLLYTEISHLPKGIQELKKIIHLNLEYTRKLESITGISSLHNLKVLKLFRSRLPWDLNTVKELETLEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQIKSCSISEIKMGGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIINEEKACEGEESGILPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATKKRFLPSCQLI

HMMPanther: PTHR23155:SF110
5-881 PTHR23155:SF110,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

FSIPFDPCVNKVSQWLDMKVSYTHNLEKNLAALEKTMKELKAKRDDLERRLKREEARGLQRLSEFQVWLDSVATVEDIIITLLRDRNVEIQRLCLCRFCSKSLTRSYRYGKSVFLRLREVEKLKGEVFGVITEQASTSAFEERPLQPTIVGQDTMLDKAGKHLMEDGVGIMGMYGMGGVGKTTLLTQLYNMFNKDKCGFDIGIWVVVSQEFHVEKVQDEIAQKLGLGGDEWTQKDKSQKGICLYNILREKSFVLFLDDIWEKVDLAEIGVPDPRTKKGRKLAFTTRSQEVCARMGVEHPMEVQCLEENVAFDLFQKKVGQTTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRHAIHVLNSYAAEFIGMEDKVLPLLKYSYDNLKGEQVKSSLLYCALYPEDAKILKEDLIEHWICEEIIDGSEGIEKAEDKGYEIIGCLVRASLLMEWDDGDGRRAVCMHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKIKNWNVVRRMSLMENKIHHLVGSYECMELTTLLLGKREYGSIRSQLKTISSEFFNCMPKLAVLDLSHNKSLFELPEEISNLVSLKYLNLLYTEISHLPKGIQELKKIIHLNLEYTRKLESITGISSLHNLKVLKLFRSRLPWDLNTVKELETLEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQIKSCSISEIKMGGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIINEEKACEGEESGILPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATKKRFLPSCQLI

superfamily: SSF52540
136-382 SSF52540

TEQASTSAFEERPLQPTIVGQDTMLDKAGKHLMEDGVGIMGMYGMGGVGKTTLLTQLYNMFNKDKCGFDIGIWVVVSQEFHVEKVQDEIAQKLGLGGDEWTQKDKSQKGICLYNILREKSFVLFLDDIWEKVDLAEIGVPDPRTKKGRKLAFTTRSQEVCARMGVEHPMEVQCLEENVAFDLFQKKVGQTTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRHAIHVLNSYAAEFI

HMMPfam: PF00931
IPR002182
157-436 NB-ARC,NBS
NB-ARC

DTMLDKAGKHLMEDGVGIMGMYGMGGVGKTTLLTQLYNMFNKDKCGFDIGIWVVVSQEFHVEKVQDEIAQKLGLGGDEWTQKDKSQKGICLYNILREKSFVLFLDDIWEKVDLAEIGVPDPRTKKGRKLAFTTRSQEVCARMGVEHPMEVQCLEENVAFDLFQKKVGQTTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRHAIHVLNSYAAEFIGMEDKVLPLLKYSYDNLKGEQVKSSLLYCALYPEDAKILKEDLIEHWICEEIID

Gene3D: G3DSA:3.40.50.300
170-265 G3DSA:3.40.50.300

DGVGIMGMYGMGGVGKTTLLTQLYNMFNKDKCGFDIGIWVVVSQEFHVEKVQDEIAQKLGLGGDEWTQKDKSQKGICLYNILREKSFVLFLDDIWE

FPrintScan: PR00364
IPR000767
174-189 DISEASERSIST
Disease resistance protein

IMGMYGMGGVGKTTLL

FPrintScan: PR00364
IPR000767
250-264 DISEASERSIST
Disease resistance protein

ILREKSFVLFLDDIW

FPrintScan: PR00364
IPR000767
344-358 DISEASERSIST
Disease resistance protein

CCGLPLALNVIGETM

superfamily: SSF52058
474-837 SSF52058,LRR

CMHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKIKNWNVVRRMSLMENKIHHLVGSYECMELTTLLLGKREYGSIRSQLKTISSEFFNCMPKLAVLDLSHNKSLFELPEEISNLVSLKYLNLLYTEISHLPKGIQELKKIIHLNLEYTRKLESITGISSLHNLKVLKLFRSRLPWDLNTVKELETLEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQIKSCSISEIKMGGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIINEEKACEGEESGILPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLP

Gene3D: G3DSA:3.80.10.10
506-669 G3DSA:3.80.10.10

REIPKIKNWNVVRRMSLMENKIHHLVGSYECMELTTLLLGKREYGSIRSQLKTISSEFFNCMPKLAVLDLSHNKSLFELPEEISNLVSLKYLNLLYTEISHLPKGIQELKKIIHLNLEYTRKLESITGISSLHNLKVLKLFRSRLPWDLNTVKELETLEHLEIL

FPrintScan: PR00364
IPR000767
565-581 DISEASERSIST
Disease resistance protein

NCMPKLAVLDLSHNKSL

Gene3D: G3DSA:3.80.10.10
688-838 G3DSA:3.80.10.10

SHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQIKSCSISEIKMGGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIINEEKACEGEESGILPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLPL






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