PRGDB00046963 (disease resistance protein (CC-NBS-LRR class), putative)

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disease resistance protein (CC-NBS-LRR class), putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 18406289 (NM_104621)
Gene Class CNL
Domain Type LRR, NBS, LRR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana disease resistance protein (CC-NBS-LRR class), putative (AT1G58410) mRNA, complete cds.

DNA Sequence

ATGGAACTTGTGTCGTTTGGAGTAGAAAAGCTTTGGGACCGACTGAGCCAAGAATATGACCAATTTAAAGGAGTTGAAGATCAAGTAACTGAGTTAAAAAGTAACCTAAACTTGTTAAAGTCATTTTTGAAAGATGCAGATGCCAAGAAACATATAAGTGAGATGGTGCGACACTGTGTGGAAGAGATCAAAGATATTGTTTATGACACGGAGGACATAATCGAAACGTTTATTCTCAAGGAAAAAGTTGAAATGAAACGTGGCATCATGAAGCGTATCAAAAGATTTGCTTCGACTATAATGGATCGTAGGGAACTTGCGTCTGATATTGGAGGAATAAGTAAGCGGATCTCCAAGGTGATACAGGATATGCAAAGTTTTGGAGTACAACAGATAATTACTGATGGCAGCCGTTCTTCACATCCACTACAAGAAAGACAAAGGGAGATGCGGCACACGTTTTCTAGGGACTCCGAAAACGATTTTGTGGGAATGGAAGCAAATGTTAAGAAATTGGTTGGATATTTGGTGGAGAAAGATGACTATCAAATTGTTTCTTTAACCGGGATGGGTGGTCTTGGTAAAACCACCCTTGCTAGACAAGTTTTTAATCATGATGTTGTAAAAGATCGGTTTGATGGATTCGCATGGGTGAGTGTTTCGCAAGAGTTTACTCGGATATCGGTGTGGCAAACGATCTTGCAGAATCTCACATCTAAAGAGAGGAAAGATGAAATCCAGAATATGAAAGAAGCTGACCTTCATGATGATCTCTTCCGATTGTTGGAATCATCTAAAACATTAATTGTGCTAGATGACATATGGAAAGAAGAAGATTGGGACTTAATCAAGCCAATATTTCCACCCAAAAAAGGTTGGAAGGTGCTACTTACTTCTCGAACTGAGAGTATCGCGATGCGTGGAGATACAACATATATTAGCTTTAAACCAAAATGCCTATCTATCCCAGACAGTTGGACACTTTTCCAAAGCATAGCAATGCCAAGGAAAGATACATCCGAATTTAAGGTTGATGAGGAAATGGAAAATATGGGTAAGAAGATGATCAAACATTGTGGAGGACTATCATTGGCTGTCAAAGTCTTAGGAGGGTTGTTAGCTGCAAAATACACACTGCATGATTGGAAAAGATTATCTGAGAATATTGGATCTCATATCGTGGAAAGAACTAGCGGTAACAACAGTTCTATTGATCATGTATTGTCTGTGAGCTTTGAAGAATTGCCTAATTATTTGAAGCATTGTTTCCTATACCTCGCCCACTTTCCAGAAGATCATGAGATAGACGTAGAGAAGTTGCATTATTATTGGGCTGCAGAAGGAATATCTGAACGTAGGCGTTACGATGGAGAGACCATTCGAGATACTGGAGATAGCTACATAGAGGAGTTGGTGAGAAGAAATATGGTTATTTCTGAAAGGGACGTTATGACTTCCAGATTTGAAACTTGTCGTTTGCATGACATGATGAGAGAAATTTGTTTGTTTAAAGCCAAAGAAGAGAACTTCCTACAAATTGTCAGTAACCACTCCCCGACATCAAACCCTCAAACTCTTGGTGCTTCTCGCAGATTTGTCTTACATAATCCTACTACATTACATGTTGAGAGATATAAAAATAATCCAAAACTTCGATCGCTCGTGGTTGTCTATGATGATATTGGAAATAGAAGATGGATGCTATCAGGTTCAATCTTTACAAGGGTAAAACTTCTACGGGTGTTAGATCTCGTTCAAGCCAAGTTTAAAGGAGGGAAGTTACCTTCTGACATTGGAAAGCTCATCCACTTAAGATACTTGAGCTTAAAAGATGCCAAGGTATCTCATCTACCTTCTTCTCTAAGAAATCTAGTCCTGCTAATCTATTTAGATATACGCACAGATTTCACGGATATATTCGTGCCCAATGTCTTCATGGGGATGAGAGAATTGAGATATCTTGAACTACCCAGATTTATGCATGAGAAGACAAAGTTGGAGTTGAGTAATCTAGAAAAATTGGAGGCCTTAGAGAATTTCTCAACAAAGAGTAGCAGCTTGGAGGATCTCCGTGGTATGGTCAGGTTGAGGACTCTTGTGATCATTTTAAGTGAGGGGACTAGTCTACAAACTCTATCTGCATCAGTATGTGGACTGAGACACTTGGAAAATTTTAAAATAATGGAAAACGCTGGCGTTAACAGGATGGGAGAAGAGAGAATGGTATTGGATTTCACTTATCTCAAAAAGCTCACCTTGAGTATAGAGATGCCAAGGCTTCCTAAAATACAACACCTTCCTTCTCACCTTACGGTCTTAGATCTATCTTACTGTTGTTTGGAGGAAGATCCAATGCCGATTCTAGAGAAATTACTCGAGTTAAAAGATTTAAGTTTAGATTATCTATCTTTCTCCGGGAGGAAAATGGTTTGCTCGGCTGGTGGGTTTCCTCAATTGCGTAAGCTAGCTTTGGATGAACAAGAGGAGTGGGAAGAGTGGATAGTAGAAGAAGGCTCCATGTCACGGCTTCATACTCTAAGTATTTGGAGTTCAACATTAAAGGAGCTTCCTGATGGGCTGCGATTCATATATTCTTTAAAGAATCTGATCATGGGAAAGAGCTGGATGGAGAGATTATCGGAACGAGGAGAAGAATTTTACAAAGTTCAAAACATTCCTTTTATTAAATTCAGTTCTTAA


Protein sequences

Name Description Sequence
disease resistance protein (CC-NBS-LRR class), putative disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana].

MELVSFGVEKLWDRLSQEYDQFKGVEDQVTELKSNLNLLKSFLKDADAKKHISEMVRHCVEEIKDIVYDTEDIIETFILKEKVEMKRGIMKRIKRFASTIMDRRELASDIGGISKRISKVIQDMQSFGVQQIITDGSRSSHPLQERQREMRHTFSRDSENDFVGMEANVKKLVGYLVEKDDYQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRISVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIWKEEDWDLIKPIFPPKKGWKVLLTSRTESIAMRGDTTYISFKPKCLSIPDSWTLFQSIAMPRKDTSEFKVDEEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKRLSENIGSHIVERTSGNNSSIDHVLSVSFEELPNYLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISERRRYDGETIRDTGDSYIEELVRRNMVISERDVMTSRFETCRLHDMMREICLFKAKEENFLQIVSNHSPTSNPQTLGASRRFVLHNPTTLHVERYKNNPKLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDFTDIFVPNVFMGMRELRYLELPRFMHEKTKLELSNLEKLEALENFSTKSSSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCGLRHLENFKIMENAGVNRMGEERMVLDFTYLKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLSFSGRKMVCSAGGFPQLRKLALDEQEEWEEWIVEEGSMSRLHTLSIWSSTLKELPDGLRFIYSLKNLIMGKSWMERLSERGEEFYKVQNIPFIKFSS

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF233
1-897 PTHR23155:SF233,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

MELVSFGVEKLWDRLSQEYDQFKGVEDQVTELKSNLNLLKSFLKDADAKKHISEMVRHCVEEIKDIVYDTEDIIETFILKEKVEMKRGIMKRIKRFASTIMDRRELASDIGGISKRISKVIQDMQSFGVQQIITDGSRSSHPLQERQREMRHTFSRDSENDFVGMEANVKKLVGYLVEKDDYQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRISVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIWKEEDWDLIKPIFPPKKGWKVLLTSRTESIAMRGDTTYISFKPKCLSIPDSWTLFQSIAMPRKDTSEFKVDEEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKRLSENIGSHIVERTSGNNSSIDHVLSVSFEELPNYLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISERRRYDGETIRDTGDSYIEELVRRNMVISERDVMTSRFETCRLHDMMREICLFKAKEENFLQIVSNHSPTSNPQTLGASRRFVLHNPTTLHVERYKNNPKLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDFTDIFVPNVFMGMRELRYLELPRFMHEKTKLELSNLEKLEALENFSTKSSSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCGLRHLENFKIMENAGVNRMGEERMVLDFTYLKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLSFSGRKMVCSAGGFPQLRKLALDEQEEWEEWIVEEGSMSRLHTLSIWSSTLKELPDGLRFIYSLKNLIMGKSWMERLSERGEEFYKVQNIPFIKF

HMMPanther: PTHR23155
1-897 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MELVSFGVEKLWDRLSQEYDQFKGVEDQVTELKSNLNLLKSFLKDADAKKHISEMVRHCVEEIKDIVYDTEDIIETFILKEKVEMKRGIMKRIKRFASTIMDRRELASDIGGISKRISKVIQDMQSFGVQQIITDGSRSSHPLQERQREMRHTFSRDSENDFVGMEANVKKLVGYLVEKDDYQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRISVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIWKEEDWDLIKPIFPPKKGWKVLLTSRTESIAMRGDTTYISFKPKCLSIPDSWTLFQSIAMPRKDTSEFKVDEEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKRLSENIGSHIVERTSGNNSSIDHVLSVSFEELPNYLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISERRRYDGETIRDTGDSYIEELVRRNMVISERDVMTSRFETCRLHDMMREICLFKAKEENFLQIVSNHSPTSNPQTLGASRRFVLHNPTTLHVERYKNNPKLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDFTDIFVPNVFMGMRELRYLELPRFMHEKTKLELSNLEKLEALENFSTKSSSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCGLRHLENFKIMENAGVNRMGEERMVLDFTYLKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLSFSGRKMVCSAGGFPQLRKLALDEQEEWEEWIVEEGSMSRLHTLSIWSSTLKELPDGLRFIYSLKNLIMGKSWMERLSERGEEFYKVQNIPFIKF

superfamily: SSF52540
143-397 SSF52540

LQERQREMRHTFSRDSENDFVGMEANVKKLVGYLVEKDDYQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRISVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIWKEEDWDLIKPIFPPKKGWKVLLTSRTESIAMRGDTTYISFKPKCLSIPDSWTLFQSIAMPRKDTSEFKVDEEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKRLSENIGSHIVERT

Gene3D: G3DSA:3.40.50.300
159-279 G3DSA:3.40.50.300

ENDFVGMEANVKKLVGYLVEKDDYQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRISVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIWKEED

HMMPfam: PF00931
IPR002182
166-451 NB-ARC,NBS
NB-ARC

EANVKKLVGYLVEKDDYQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRISVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIWKEEDWDLIKPIFPPKKGWKVLLTSRTESIAMRGDTTYISFKPKCLSIPDSWTLFQSIAMPRKDTSEFKVDEEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKRLSENIGSHIVERTSGNNSSIDHVLSVSFEELPNYLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISE

FPrintScan: PR00364
IPR000767
184-199 DISEASERSIST
Disease resistance protein

IVSLTGMGGLGKTTLA

FPrintScan: PR00364
IPR000767
261-275 DISEASERSIST
Disease resistance protein

LLESSKTLIVLDDIW

FPrintScan: PR00364
IPR000767
359-373 DISEASERSIST
Disease resistance protein

CGGLSLAVKVLGGLL

superfamily: SSF52058
492-871 SSF52058,LRR

RLHDMMREICLFKAKEENFLQIVSNHSPTSNPQTLGASRRFVLHNPTTLHVERYKNNPKLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDFTDIFVPNVFMGMRELRYLELPRFMHEKTKLELSNLEKLEALENFSTKSSSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCGLRHLENFKIMENAGVNRMGEERMVLDFTYLKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLSFSGRKMVCSAGGFPQLRKLALDEQEEWEEWIVEEGSMSRLHTLSIWSSTLKELPDGLRFIYSLKNLIM

Gene3D: G3DSA:3.80.10.10
550-696 G3DSA:3.80.10.10

KLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDFTDIFVPNVFMGMRELRYLELPRFMHEKTKLELSNLEKLEALENFSTKSSSLEDLRGMVRL

FPrintScan: PR00364
IPR000767
574-590 DISEASERSIST
Disease resistance protein

TRVKLLRVLDLVQAKFK

Gene3D: G3DSA:3.80.10.10
748-871 G3DSA:3.80.10.10

LKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLSFSGRKMVCSAGGFPQLRKLALDEQEEWEEWIVEEGSMSRLHTLSIWSSTLKELPDGLRFIYSLKNLIM






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