PRGDB00046974 (disease resistance protein (TIR-NBS-LRR class), putative)

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disease resistance protein (TIR-NBS-LRR class), putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 42570589 (NM_180786)
Gene Class TNL
Domain Type LRR, LRR, NBS, LRR, TIR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana disease resistance protein (TIR-NBS-LRR class), putative (AT5G41750) mRNA, complete cds.

DNA Sequence

ATGGCTTTGTCTTCTTCTTTGTCTTGCATCAAGAGATACCAAGTCTTTTCGAGCTTCCACGGTCCAGATGTCCGTAAAGGGTTTCTCAGTCATTTACACAGTGTCTTTGCAAGCAAAGGTATCACGACTTTCAATGATCAGAAGATCGACAGAGGCCAGACGATCGGACCTGAGCTCATACAAGGGATTAGAGAAGCTAGAGTCTCGATCGTTGTGCTCTCGAAGAAGTACGCTTCTTCCAGCTGGTGTTTAGATGAACTTGTGGAAATCTTGAAGTGCAAAGAAGCTTTGGGGCAGATTGTGATGACTGTTTTTTACGAAGTTGATCCGTCAGATGTTAAGAAACAGAGTGGAGTGTTCGGGGAAGCTTTTGAGAAGACTTGTCAAGGGAAAAATGAGGAGGTGAAGATCCGATGGAGAAATGCTTTGGCACATGTCGCTACCATTGCTGGGGAACACTCTCTTAATTGGGATAATGAAGCAAAGATGATCCAAAAGATTGTTACAGATGTTTCAGACAAACTGAATCTCACACCGTCGAGGGATTTTGAGGGGATGGTAGGGATGGAAGCTCACTTGAAAAGATTGAACTCTTTGTTATGCCTGGAAAGTGATGAAGTCAAGATGATTGGAATTTGGGGTCCTGCAGGGATTGGTAAGACTACCATTGCTAGAACTTTATTCAACAAAATCTCTAGTATTTTTCCGTTTAAATGTTTTATGGAGAACCTCAAGGGAAGTATTAAGGGTGGTGCTGAACATTATTCCAAGTTGAGCTTGCAAAAGCAACTTCTGTCTGAGATTTTGAAGCAAGAGAATATGAAGATACATCATTTAGGCACAATCAAACAATGGCTACACGATCAAAAAGTGCTCATCATTCTTGACGATGTAGATGATCTTGAGCAATTAGAGGTATTGGCTGAAGATCCTTCTTGGTTTGGTTCTGGCAGTCGGATCATCGTTACCACAGAAGATAAGAATATTTTGAAGGCACATAGGATTCAGGATATCTACCATGTGGATTTTCCATCCGAGGAAGAAGCTCTTGAGATCTTATGTCTCTCTGCATTCAAACAAAGCTCTATACCAGATGGTTTTGAAGAGCTTGCCAATAAAGTAGCTGAGCTTTGCGGCAATCTTCCATTAGGCCTTTGTGTCGTGGGTGCATCTTTGCGTCGGAAGAGCAAGAACGAGTGGGAACGTCTATTATCTAGGATCGAATCTAGTCTTGATAAAAATATTGATAACATATTAAGAATCGGATATGACAGATTGTCAACGGAAGATCAATCTCTATTCCTTCACATTGCATGCTTCTTCAACAATGAAAAGGTTGATTATTTGACAGCCTTGCTAGCTGACAGAAAGTTGGATGTTGTAAATGGTTTCAATATCCTAGCCGATAGATCTCTCGTGCGTATATCTACCGATGGGCATGTAGTGATGCACCACTATCTACTACAAAAATTGGGTAGACGGATAGTTCATGAACAGTGGCCTAACGAGCCCGGGAAACGTCAATTTTTAATTGAGGCAGAAGAGATTCGTGATGTACTAACAAAAGGAACAGGTACTGAATCTGTCAAAGGTATATCATTTGATACATCCAATATCGAAGAGGTTTCGGTAGGTAAGGGGGCTTTTGAAGGAATGCGTAATCTCCAATTCCTAAGAATCTATAGAGACTCTTTCAATAGTGAAGGTACTTTGCAAATACCAGAAGATATGGAGTATATACCTCCTGTTAGGTTACTACATTGGCAAAATTACCCAAGAAAAAGTCTTCCTCAGAGATTCAACCCGGAACATCTCGTCAAAATTCGTATGCCAAGCAGCAAGCTCAAGAAGCTCTGGGGAGGAATCCAGCCCCTTCCTAATCTCAAGAGCATAGATATGAGTTTTTCCTATAGTTTGAAAGAAATCCCAAATCTTTCGAAAGCCACTAATCTCGAGATATTGAGTCTTGAGTTCTGCAAAAGTTTGGTGGAGCTTCCCTTTTCTATTTTGAATCTACACAAACTGGAGATTCTGAATGTTGAAAACTGCTCTATGCTAAAAGTTATTCCCACCAACATCAACTTAGCATCTCTTGAGAGACTCGACATGACTGGTTGCTCGGAATTGAGAACTTTTCCAGATATCTCCAGCAACATCAAGAAACTCAATCTCGGAGATACAATGATAGAAGATGTCCCTCCATCAGTTGGATGTTGGTCTCGTCTTGATCACCTTTACATTGGCAGCAGAAGCCTCAAGAGATTGCATGTACCACCATGTATAACTTCGCTAGTTCTTTGGAAAAGTAATATAGAGAGTATTCCAGAAAGCATCATAGGTCTCACTCGTCTAGATTGGCTGAATGTCAATAGCTGCAGAAAACTCAAGTCAATTCTGGGTCTCCCCTCCTCCCTCCAGGACCTAGATGCAAATGATTGTGTATCACTCAAGAGAGTATGCTTCTCTTTCCATAACCCAATCAGGGCACTCAGTTTCAACAACTGTTTGAATCTGGATGAAGAAGCAAGAAAAGGAATCATACAACAATCAGTGTACAGATACATATGCTTACCAGGTAAAAAGATCCCTGAAGAGTTCACTCACAAAGCAACAGGGAGATCCATAACCATCCCTCTGTCCCCTGGTACTCTCTCTGCTTCCTCAAGGTTTAAGGCTTCCATTCTCATTTTGCCAGTTGAGAGCTACGAAACTGATGATATAAGTTGTAGTTTAAGAACCAAAGGAGGTGTTGAAGTTCATTGCTGCGAGCTTCCATATCACTTTTTGTTGCGTTCTCGGTCAGAACACCTGTTTATATTTCATGGTGACTTGTTTCCCCAAGGAAACAAATACCATGAAGTGGATGTGACTATGAGCGAGATTACATTTGAGTTCAGCCACACTAAAATCGGTGACAAGATTATTGAGTGTGGTGTACAGATCATGACAGAGGGAGCTGAGGGTGACAGTAGCAGGGAATTGGACAGCTTTGAAACTGAGAGTAGCAGCAGCCAAGTGGACAACTTTGAAACTGGAGGCAACAACAATCACCACACCGATGGAAATGGAGATGGAAACTATCAAGCAGAAGGTTTCAAGTTCTTTCAAGATGAAAACATCAAAACCAGTAAACATACTGGTTTTAGGAGTTGGCTTCGGGAGCTTGGTCTTAAAGTGAAGAAGATGAATTCTCATGGAGTCTCATGA


Protein sequences

Name Description Sequence
disease resistance protein (TIR-NBS-LRR class), putative disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana].

MALSSSLSCIKRYQVFSSFHGPDVRKGFLSHLHSVFASKGITTFNDQKIDRGQTIGPELIQGIREARVSIVVLSKKYASSSWCLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGVFGEAFEKTCQGKNEEVKIRWRNALAHVATIAGEHSLNWDNEAKMIQKIVTDVSDKLNLTPSRDFEGMVGMEAHLKRLNSLLCLESDEVKMIGIWGPAGIGKTTIARTLFNKISSIFPFKCFMENLKGSIKGGAEHYSKLSLQKQLLSEILKQENMKIHHLGTIKQWLHDQKVLIILDDVDDLEQLEVLAEDPSWFGSGSRIIVTTEDKNILKAHRIQDIYHVDFPSEEEALEILCLSAFKQSSIPDGFEELANKVAELCGNLPLGLCVVGASLRRKSKNEWERLLSRIESSLDKNIDNILRIGYDRLSTEDQSLFLHIACFFNNEKVDYLTALLADRKLDVVNGFNILADRSLVRISTDGHVVMHHYLLQKLGRRIVHEQWPNEPGKRQFLIEAEEIRDVLTKGTGTESVKGISFDTSNIEEVSVGKGAFEGMRNLQFLRIYRDSFNSEGTLQIPEDMEYIPPVRLLHWQNYPRKSLPQRFNPEHLVKIRMPSSKLKKLWGGIQPLPNLKSIDMSFSYSLKEIPNLSKATNLEILSLEFCKSLVELPFSILNLHKLEILNVENCSMLKVIPTNINLASLERLDMTGCSELRTFPDISSNIKKLNLGDTMIEDVPPSVGCWSRLDHLYIGSRSLKRLHVPPCITSLVLWKSNIESIPESIIGLTRLDWLNVNSCRKLKSILGLPSSLQDLDANDCVSLKRVCFSFHNPIRALSFNNCLNLDEEARKGIIQQSVYRYICLPGKKIPEEFTHKATGRSITIPLSPGTLSASSRFKASILILPVESYETDDISCSLRTKGGVEVHCCELPYHFLLRSRSEHLFIFHGDLFPQGNKYHEVDVTMSEITFEFSHTKIGDKIIECGVQIMTEGAEGDSSRELDSFETESSSSQVDNFETGGNNNHHTDGNGDGNYQAEGFKFFQDENIKTSKHTGFRSWLRELGLKVKKMNSHGVS

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
1-152 TIR
Toll/interleukin-1 receptor homology (TIR) domain

MALSSSLSCIKRYQVFSSFHGPDVRKGFLSHLHSVFASKGITTFNDQKIDRGQTIGPELIQGIREARVSIVVLSKKYASSSWCLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGVFGEAFEKTCQGKNEEVKIRWRNALAHVATIAGE

ProfileScan: PS50104
IPR000157
11-149 TIR
Toll/interleukin-1 receptor homology (TIR) domain

KRYQVFSSFHGPDVRKGFLSHLHSVFASKGITTFNDQKIDRGQTIGPELIQGIREARVSIVVLSKKYASSSWCLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGVFGEAFEKTCQGKNEEVKIRWRNALAHVATI

Gene3D: G3DSA:3.40.50.10140
11-147 G3DSA:3.40.50.10140

KRYQVFSSFHGPDVRKGFLSHLHSVFASKGITTFNDQKIDRGQTIGPELIQGIREARVSIVVLSKKYASSSWCLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGVFGEAFEKTCQGKNEEVKIRWRNALAHVA

HMMSmart: SM00255
IPR000157
12-149 TIR
Toll/interleukin-1 receptor homology (TIR) domain

RYQVFSSFHGPDVRKGFLSHLHSVFASKGITTFNDQKIDRGQTIGPELIQGIREARVSIVVLSKKYASSSWCLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGVFGEAFEKTCQGKNEEVKIRWRNALAHVATI

HMMPfam: PF01582
IPR000157
15-145 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFSSFHGPDVRKGFLSHLHSVFASKGITTFNDQKIDRGQTIGPELIQGIREARVSIVVLSKKYASSSWCLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGVFGEAFEKTCQGKNEEVKIRWRNALAH

HMMPanther: PTHR11017
35-1022 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VFASKGITTFNDQKIDRGQTIGPELIQGIREARVSIVVLSKKYASSSWCLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGVFGEAFEKTCQGKNEEVKIRWRNALAHVATIAGEHSLNWDNEAKMIQKIVTDVSDKLNLTPSRDFEGMVGMEAHLKRLNSLLCLESDEVKMIGIWGPAGIGKTTIARTLFNKISSIFPFKCFMENLKGSIKGGAEHYSKLSLQKQLLSEILKQENMKIHHLGTIKQWLHDQKVLIILDDVDDLEQLEVLAEDPSWFGSGSRIIVTTEDKNILKAHRIQDIYHVDFPSEEEALEILCLSAFKQSSIPDGFEELANKVAELCGNLPLGLCVVGASLRRKSKNEWERLLSRIESSLDKNIDNILRIGYDRLSTEDQSLFLHIACFFNNEKVDYLTALLADRKLDVVNGFNILADRSLVRISTDGHVVMHHYLLQKLGRRIVHEQWPNEPGKRQFLIEAEEIRDVLTKGTGTESVKGISFDTSNIEEVSVGKGAFEGMRNLQFLRIYRDSFNSEGTLQIPEDMEYIPPVRLLHWQNYPRKSLPQRFNPEHLVKIRMPSSKLKKLWGGIQPLPNLKSIDMSFSYSLKEIPNLSKATNLEILSLEFCKSLVELPFSILNLHKLEILNVENCSMLKVIPTNINLASLERLDMTGCSELRTFPDISSNIKKLNLGDTMIEDVPPSVGCWSRLDHLYIGSRSLKRLHVPPCITSLVLWKSNIESIPESIIGLTRLDWLNVNSCRKLKSILGLPSSLQDLDANDCVSLKRVCFSFHNPIRALSFNNCLNLDEEARKGIIQQSVYRYICLPGKKIPEEFTHKATGRSITIPLSPGTLSASSRFKASILILPVESYETDDISCSLRTKGGVEVHCCELPYHFLLRSRSEHLFIFHGDLFPQGNKYHEVDVTMSEITFEFSHTKIGDKIIECGVQIMTEGAEGDSSRELDSFETESSSSQVDNFETGGNNNHHTDGN

HMMPanther: PTHR11017:SF20
35-1022 PTHR11017:SF20,SUBFAMILY NOT NAMED

VFASKGITTFNDQKIDRGQTIGPELIQGIREARVSIVVLSKKYASSSWCLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGVFGEAFEKTCQGKNEEVKIRWRNALAHVATIAGEHSLNWDNEAKMIQKIVTDVSDKLNLTPSRDFEGMVGMEAHLKRLNSLLCLESDEVKMIGIWGPAGIGKTTIARTLFNKISSIFPFKCFMENLKGSIKGGAEHYSKLSLQKQLLSEILKQENMKIHHLGTIKQWLHDQKVLIILDDVDDLEQLEVLAEDPSWFGSGSRIIVTTEDKNILKAHRIQDIYHVDFPSEEEALEILCLSAFKQSSIPDGFEELANKVAELCGNLPLGLCVVGASLRRKSKNEWERLLSRIESSLDKNIDNILRIGYDRLSTEDQSLFLHIACFFNNEKVDYLTALLADRKLDVVNGFNILADRSLVRISTDGHVVMHHYLLQKLGRRIVHEQWPNEPGKRQFLIEAEEIRDVLTKGTGTESVKGISFDTSNIEEVSVGKGAFEGMRNLQFLRIYRDSFNSEGTLQIPEDMEYIPPVRLLHWQNYPRKSLPQRFNPEHLVKIRMPSSKLKKLWGGIQPLPNLKSIDMSFSYSLKEIPNLSKATNLEILSLEFCKSLVELPFSILNLHKLEILNVENCSMLKVIPTNINLASLERLDMTGCSELRTFPDISSNIKKLNLGDTMIEDVPPSVGCWSRLDHLYIGSRSLKRLHVPPCITSLVLWKSNIESIPESIIGLTRLDWLNVNSCRKLKSILGLPSSLQDLDANDCVSLKRVCFSFHNPIRALSFNNCLNLDEEARKGIIQQSVYRYICLPGKKIPEEFTHKATGRSITIPLSPGTLSASSRFKASILILPVESYETDDISCSLRTKGGVEVHCCELPYHFLLRSRSEHLFIFHGDLFPQGNKYHEVDVTMSEITFEFSHTKIGDKIIECGVQIMTEGAEGDSSRELDSFETESSSSQVDNFETGGNNNHHTDGN

superfamily: SSF52540
169-415 SSF52540

TDVSDKLNLTPSRDFEGMVGMEAHLKRLNSLLCLESDEVKMIGIWGPAGIGKTTIARTLFNKISSIFPFKCFMENLKGSIKGGAEHYSKLSLQKQLLSEILKQENMKIHHLGTIKQWLHDQKVLIILDDVDDLEQLEVLAEDPSWFGSGSRIIVTTEDKNILKAHRIQDIYHVDFPSEEEALEILCLSAFKQSSIPDGFEELANKVAELCGNLPLGLCVVGASLRRKSKNEWERLLSRIESSLDKNI

HMMPfam: PF00931
IPR002182
190-447 NB-ARC,NBS
NB-ARC

EAHLKRLNSLLCLESDEVKMIGIWGPAGIGKTTIARTLFNKISSIFPFKCFMENLKGSIKGGAEHYSKLSLQKQLLSEILKQENMKIHHLGTIKQWLHDQKVLIILDDVDDLEQLEVLAEDPSWFGSGSRIIVTTEDKNILKAHRIQDIYHVDFPSEEEALEILCLSAFKQSSIPDGFEELANKVAELCGNLPLGLCVVGASLRRKSKNEWERLLSRIESSLDKNIDNILRIGYDRLSTEDQSLFLHIACFFNNEKVD

HMMSmart: SM00382
IPR003593
206-344 AAA,NBS
AAA+ ATPase domain

EVKMIGIWGPAGIGKTTIARTLFNKISSIFPFKCFMENLKGSIKGGAEHYSKLSLQKQLLSEILKQENMKIHHLGTIKQWLHDQKVLIILDDVDDLEQLEVLAEDPSWFGSGSRIIVTTEDKNILKAHRIQDIYHVDFP

Gene3D: G3DSA:3.40.50.300
207-390 G3DSA:3.40.50.300

VKMIGIWGPAGIGKTTIARTLFNKISSIFPFKCFMENLKGSIKGGAEHYSKLSLQKQLLSEILKQENMKIHHLGTIKQWLHDQKVLIILDDVDDLEQLEVLAEDPSWFGSGSRIIVTTEDKNILKAHRIQDIYHVDFPSEEEALEILCLSAFKQSSIPDGFEELANKVAELCGNLPLGLCVVGA

FPrintScan: PR00364
IPR000767
209-224 DISEASERSIST
Disease resistance protein

MIGIWGPAGIGKTTIA

FPrintScan: PR00364
IPR000767
285-299 DISEASERSIST
Disease resistance protein

WLHDQKVLIILDDVD

FPrintScan: PR00364
IPR000767
378-392 DISEASERSIST
Disease resistance protein

CGNLPLGLCVVGASL

superfamily: SSF46785
413-521 SSF46785

KNIDNILRIGYDRLSTEDQSLFLHIACFFNNEKVDYLTALLADRKLDVVNGFNILADRSLVRISTDGHVVMHHYLLQKLGRRIVHEQWPNEPGKRQFLIEAEEIRDVLT

superfamily: SSF52058
495-859 SSF52058,LRR

IVHEQWPNEPGKRQFLIEAEEIRDVLTKGTGTESVKGISFDTSNIEEVSVGKGAFEGMRNLQFLRIYRDSFNSEGTLQIPEDMEYIPPVRLLHWQNYPRKSLPQRFNPEHLVKIRMPSSKLKKLWGGIQPLPNLKSIDMSFSYSLKEIPNLSKATNLEILSLEFCKSLVELPFSILNLHKLEILNVENCSMLKVIPTNINLASLERLDMTGCSELRTFPDISSNIKKLNLGDTMIEDVPPSVGCWSRLDHLYIGSRSLKRLHVPPCITSLVLWKSNIESIPESIIGLTRLDWLNVNSCRKLKSILGLPSSLQDLDANDCVSLKRVCFSFHNPIRALSFNNCLNLDEEARKGIIQQSVYRYICLPG

Gene3D: G3DSA:3.80.10.10
535-818 G3DSA:3.80.10.10

DTSNIEEVSVGKGAFEGMRNLQFLRIYRDSFNSEGTLQIPEDMEYIPPVRLLHWQNYPRKSLPQRFNPEHLVKIRMPSSKLKKLWGGIQPLPNLKSIDMSFSYSLKEIPNLSKATNLEILSLEFCKSLVELPFSILNLHKLEILNVENCSMLKVIPTNINLASLERLDMTGCSELRTFPDISSNIKKLNLGDTMIEDVPPSVGCWSRLDHLYIGSRSLKRLHVPPCITSLVLWKSNIESIPESIIGLTRLDWLNVNSCRKLKSILGLPSSLQDLDANDCVSLKR

HMMPfam: PF07725
IPR011713
604-623 LRR_3
Leucine-rich repeat 3

HLVKIRMPSSKLKKLWGGIQ

FPrintScan: PR00364
IPR000767
693-709 DISEASERSIST
Disease resistance protein

INLASLERLDMTGCSEL






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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