PRGDB00046980 (disease resistance protein (TIR-NBS class), putative)
| disease resistance protein (TIR-NBS class), putative | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 145337336 (NM_105624) |
| Gene Class | TNL |
| Domain Type | LRR, NBS, TIR, Others |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGCTAATGGATTCTTCTTTTTTCCTTACCATTGTTGCTGCTGCTTTTGCAATAGGCTTCTTCATCTTTCTTAGAAAGTTGAGAATCCATCAAGAAAACGAAGATGTGGGTTCTTCTTCTACATCTCCTCCATCGTCTTTGGCGTCTTCAACATCTCCTCCATCTACGTTGTCTTCTTCAACATCTCATCCGTCTTCTTCAACTTCTCCTCCATCATCTTTGTCTTGCACCGGGACTCACCATGTATTTCCAAGCTTCCGTGGGGATGACGTTCGCAGAAACTTTCTCAGTCACATTCAAAAGGAGTTTCGGAGAAAAGGAATCACTCCGTTCATCGATAATGAGATTAGGAGAGGAGAATCCATCGGTCCTGAACTCATTAAGGCCATTAGAGAATCTAAGATCGCAATTGTTCTGCTCTCGAGGAACTATGCTTCTTCAAAGTGGTGTCTTGAAGAATTGGTGGAGATTATGAAATGCAAGAAAGAGTTTGGTCTAACAGTGTTTGCCATTTTCTATGAAGTTGATCCATCCCATGTTAAGAAGCTTACCGGAGAATTTGGAGCTGTCTTTCAGAAAACTTGTAAGGGTAGAACAAAGGAGAATATTATGAGATGGAGACAAGCTTTTGAGGAGGTTGCTACAATTGCTGGTTACGATTCAAGAAACTGGGAAAATGAAGCTGCCATGATTGAAGAAATTGCCATTGAAATTTCCAAAAGATTGATTAATTCCTCACCGTTCAGTGGGTTTGAAGGTTTGATTGGGATGAAAGCTCATATAGAAAAGATGAAACAGTTGCTTTGCCTCGATTCAACAGATGAAAGGAGGACGGTTGGTATTTCAGGTCCTTCTGGAATTGGTAAGAGCACTATTGCTAGAGTTCTACATAATCAAATCTCTGATGGTTTTCAAATGAGTGTTTTCATGAAATTCAAACCAAGTTATACAAGACCAATTTGTTCTGATGATCACGATGTGAAGTTGCAATTAGAGCAGCAATTTCTAGCTCAATTGATTAACCAAGAGGATATCAAGATTCATCAGTTAGGAACTGCGCAAAACTTTGTGATGGGAAAGAAAGTGCTTATTGTTCTTGATGGGGTGGATCAATTAGTACAATTACTTGCCATGCCAAAGGCGGTATGCCTCGGTCCTGGATCTCGTATTATCATCACAACACAAGATCAACAACTTTTGAAGGCGTTTCAGATCAAACATATTTACAATGTGGATTTTCCACCAGATCATGAGGCTCTTCAAATCTTCTGCATCCATGCTTTTGGTCATGATTCCCCTGATGATGGTTTCGAGAAGCTTGCTACGAAAGTTACAAGACTTGCTGGTAATCTCCCTTTGGGACTTAGGGTTATGGGTTCTCATTTCCGGGGAATGTCCAAGGAAGATTGGAAAGGGGAACTACCAAGGTTACGGATTCGCCTTGACGGAGAAATAGGGAGCATTTTAAAATTTAGTTACGATGTCTTGGACGACGAAGACAAAGATTTGTTTCTCCATATAGCATGTTTTTTTAACGACGAAGGCATTGATCATACCTTTGAAGATACTCTTCGTCACAAATTCTCAAACGTGCAGCGAGGGCTTCAGGTCTTAGTTCAAAGATCTCTCATATCCGAGGATTTAACTCAACCGATGCATAATCTACTAGTTCAATTGGGTAGAGAAATTGTTCGTAACCAATCCGTTTATGAACCTGGGAAACGTCAATTTCTAGTTGATGGAAAGGAGATTTGTGAAGTACTTACTAGTCATACAGGAAGTGAAAGTGTTATAGGCATAAATTTCGAAGTTTATTGGAGCATGGACGAACTAAATATAAGTGATAGAGTTTTTGAAGGAATGTCTAATCTTCAATTTTTTAGATTCGATGAAAATTCTTATGGAAGATTGCACTTGCCACAAGGTCTAAACTATCTACCTCCAAAACTTAGAATTCTACATTGGGATTACTATCCGATGACAAGTTTGCCTTCTAAGTTTAATCTGAAGTTTCTTGTCAAGATAATATTGAAACACAGTGAGCTCGAGAAACTGTGGGAAGGAATTCAAGTAAGCATTTACCATTCTTTTATGAAATTTATTTTATTTTAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein (TIR-NBS class), putative | disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana]. | MLMDSSFFLTIVAAAFAIGFFIFLRKLRIHQENEDVGSSSTSPPSSLASSTSPPSTLSSSTSHPSSSTSPPSSLSCTGTHHVFPSFRGDDVRRNFLSHIQKEFRRKGITPFIDNEIRRGESIGPELIKAIRESKIAIVLLSRNYASSKWCLEELVEIMKCKKEFGLTVFAIFYEVDPSHVKKLTGEFGAVFQKTCKGRTKENIMRWRQAFEEVATIAGYDSRNWENEAAMIEEIAIEISKRLINSSPFSGFEGLIGMKAHIEKMKQLLCLDSTDERRTVGISGPSGIGKSTIARVLHNQISDGFQMSVFMKFKPSYTRPICSDDHDVKLQLEQQFLAQLINQEDIKIHQLGTAQNFVMGKKVLIVLDGVDQLVQLLAMPKAVCLGPGSRIIITTQDQQLLKAFQIKHIYNVDFPPDHEALQIFCIHAFGHDSPDDGFEKLATKVTRLAGNLPLGLRVMGSHFRGMSKEDWKGELPRLRIRLDGEIGSILKFSYDVLDDEDKDLFLHIACFFNDEGIDHTFEDTLRHKFSNVQRGLQVLVQRSLISEDLTQPMHNLLVQLGREIVRNQSVYEPGKRQFLVDGKEICEVLTSHTGSESVIGINFEVYWSMDELNISDRVFEGMSNLQFFRFDENSYGRLHLPQGLNYLPPKLRILHWDYYPMTSLPSKFNLKFLVKIILKHSELEKLWEGIQVSIYHSFMKFILF |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
68-219 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
TSPPSSLSCTGTHHVFPSFRGDDVRRNFLSHIQKEFRRKGITPFIDNEIRRGESIGPELIKAIRESKIAIVLLSRNYASSKWCLEELVEIMKCKKEFGLTVFAIFYEVDPSHVKKLTGEFGAVFQKTCKGRTKENIMRWRQAFEEVATIAGY |
| ProfileScan: PS50104 IPR000157
|
78-216 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
GTHHVFPSFRGDDVRRNFLSHIQKEFRRKGITPFIDNEIRRGESIGPELIKAIRESKIAIVLLSRNYASSKWCLEELVEIMKCKKEFGLTVFAIFYEVDPSHVKKLTGEFGAVFQKTCKGRTKENIMRWRQAFEEVATI |
| HMMSmart: SM00255 IPR000157
|
79-216 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
THHVFPSFRGDDVRRNFLSHIQKEFRRKGITPFIDNEIRRGESIGPELIKAIRESKIAIVLLSRNYASSKWCLEELVEIMKCKKEFGLTVFAIFYEVDPSHVKKLTGEFGAVFQKTCKGRTKENIMRWRQAFEEVATI |
| Gene3D: G3DSA:3.40.50.10140 | 80-214 | G3DSA:3.40.50.10140 | HHVFPSFRGDDVRRNFLSHIQKEFRRKGITPFIDNEIRRGESIGPELIKAIRESKIAIVLLSRNYASSKWCLEELVEIMKCKKEFGLTVFAIFYEVDPSHVKKLTGEFGAVFQKTCKGRTKENIMRWRQAFEEVA |
| HMMPfam: PF01582 IPR000157
|
82-210 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFPSFRGDDVRRNFLSHIQKEFRRKGITPFIDNEIRRGESIGPELIKAIRESKIAIVLLSRNYASSKWCLEELVEIMKCKKEFGLTVFAIFYEVDPSHVKKLTGEFGAVFQKTCKGRTKENIMRWRQAF |
| HMMPanther: PTHR11017:SF20 | 104-690 | PTHR11017:SF20,SUBFAMILY NOT NAMED | RRKGITPFIDNEIRRGESIGPELIKAIRESKIAIVLLSRNYASSKWCLEELVEIMKCKKEFGLTVFAIFYEVDPSHVKKLTGEFGAVFQKTCKGRTKENIMRWRQAFEEVATIAGYDSRNWENEAAMIEEIAIEISKRLINSSPFSGFEGLIGMKAHIEKMKQLLCLDSTDERRTVGISGPSGIGKSTIARVLHNQISDGFQMSVFMKFKPSYTRPICSDDHDVKLQLEQQFLAQLINQEDIKIHQLGTAQNFVMGKKVLIVLDGVDQLVQLLAMPKAVCLGPGSRIIITTQDQQLLKAFQIKHIYNVDFPPDHEALQIFCIHAFGHDSPDDGFEKLATKVTRLAGNLPLGLRVMGSHFRGMSKEDWKGELPRLRIRLDGEIGSILKFSYDVLDDEDKDLFLHIACFFNDEGIDHTFEDTLRHKFSNVQRGLQVLVQRSLISEDLTQPMHNLLVQLGREIVRNQSVYEPGKRQFLVDGKEICEVLTSHTGSESVIGINFEVYWSMDELNISDRVFEGMSNLQFFRFDENSYGRLHLPQGLNYLPPKLRILHWDYYPMTSLPSKFNLKFLVKIILKHSELEKLWEGIQ |
| HMMPanther: PTHR11017 | 104-690 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | RRKGITPFIDNEIRRGESIGPELIKAIRESKIAIVLLSRNYASSKWCLEELVEIMKCKKEFGLTVFAIFYEVDPSHVKKLTGEFGAVFQKTCKGRTKENIMRWRQAFEEVATIAGYDSRNWENEAAMIEEIAIEISKRLINSSPFSGFEGLIGMKAHIEKMKQLLCLDSTDERRTVGISGPSGIGKSTIARVLHNQISDGFQMSVFMKFKPSYTRPICSDDHDVKLQLEQQFLAQLINQEDIKIHQLGTAQNFVMGKKVLIVLDGVDQLVQLLAMPKAVCLGPGSRIIITTQDQQLLKAFQIKHIYNVDFPPDHEALQIFCIHAFGHDSPDDGFEKLATKVTRLAGNLPLGLRVMGSHFRGMSKEDWKGELPRLRIRLDGEIGSILKFSYDVLDDEDKDLFLHIACFFNDEGIDHTFEDTLRHKFSNVQRGLQVLVQRSLISEDLTQPMHNLLVQLGREIVRNQSVYEPGKRQFLVDGKEICEVLTSHTGSESVIGINFEVYWSMDELNISDRVFEGMSNLQFFRFDENSYGRLHLPQGLNYLPPKLRILHWDYYPMTSLPSKFNLKFLVKIILKHSELEKLWEGIQ |
| superfamily: SSF52540 | 133-505 | SSF52540 | SKIAIVLLSRNYASSKWCLEELVEIMKCKKEFGLTVFAIFYEVDPSHVKKLTGEFGAVFQKTCKGRTKENIMRWRQAFEEVATIAGYDSRNWENEAAMIEEIAIEISKRLINSSPFSGFEGLIGMKAHIEKMKQLLCLDSTDERRTVGISGPSGIGKSTIARVLHNQISDGFQMSVFMKFKPSYTRPICSDDHDVKLQLEQQFLAQLINQEDIKIHQLGTAQNFVMGKKVLIVLDGVDQLVQLLAMPKAVCLGPGSRIIITTQDQQLLKAFQIKHIYNVDFPPDHEALQIFCIHAFGHDSPDDGFEKLATKVTRLAGNLPLGLRVMGSHFRGMSKEDWKGELPRLRIRLDGEIGSILKFSYDVLDDEDKDLFL |
| Gene3D: G3DSA:3.40.50.300 | 248-289 | G3DSA:3.40.50.300 | FSGFEGLIGMKAHIEKMKQLLCLDSTDERRTVGISGPSGIGK |
| HMMPfam: PF00931 IPR002182
|
258-516 | NB-ARC,NBS NB-ARC
|
KAHIEKMKQLLCLDSTDERRTVGISGPSGIGKSTIARVLHNQISDGFQMSVFMKFKPSYTRPICSDDHDVKLQLEQQFLAQLINQEDIKIHQLGTAQNFVMGKKVLIVLDGVDQLVQLLAMPKAVCLGPGSRIIITTQDQQLLKAFQIKHIYNVDFPPDHEALQIFCIHAFGHDSPDDGFEKLATKVTRLAGNLPLGLRVMGSHFRGMSKEDWKGELPRLRIRLDGEIGSILKFSYDVLDDEDKDLFLHIACFFNDEGI |
| HMMSmart: SM00382 IPR003593
|
275-414 | AAA,NBS AAA+ ATPase domain
|
ERRTVGISGPSGIGKSTIARVLHNQISDGFQMSVFMKFKPSYTRPICSDDHDVKLQLEQQFLAQLINQEDIKIHQLGTAQNFVMGKKVLIVLDGVDQLVQLLAMPKAVCLGPGSRIIITTQDQQLLKAFQIKHIYNVDFP |
| FPrintScan: PR00364 IPR000767
|
278-293 | DISEASERSIST Disease resistance protein
|
TVGISGPSGIGKSTIA |
| Gene3D: G3DSA:3.40.50.300 | 290-360 | G3DSA:3.40.50.300 | STIARVLHNQISDGFQMSVFMKFKPSYTRPICSDDHDVKLQLEQQFLAQLINQEDIKIHQLGTAQNFVMGK |
| FPrintScan: PR00364 IPR000767
|
356-370 | DISEASERSIST Disease resistance protein
|
FVMGKKVLIVLDGVD |
| FPrintScan: PR00364 IPR000767
|
448-462 | DISEASERSIST Disease resistance protein
|
AGNLPLGLRVMGSHF |
| superfamily: SSF46785 | 483-589 | SSF46785 | GEIGSILKFSYDVLDDEDKDLFLHIACFFNDEGIDHTFEDTLRHKFSNVQRGLQVLVQRSLISEDLTQPMHNLLVQLGREIVRNQSVYEPGKRQFLVDGKEICEVLT |
| Gene3D: G3DSA:3.40.50.300 | 568-613 | G3DSA:3.40.50.300 | SVYEPGKRQFLVDGKEICEVLTSHTGSESVIGINFEVYWSMDELNI |
| superfamily: SSF52047 | 609-690 | SSF52047,LRR | DELNISDRVFEGMSNLQFFRFDENSYGRLHLPQGLNYLPPKLRILHWDYYPMTSLPSKFNLKFLVKIILKHSELEKLWEGIQ |
| Gene3D: G3DSA:3.80.10.10 | 614-687 | G3DSA:3.80.10.10 | SDRVFEGMSNLQFFRFDENSYGRLHLPQGLNYLPPKLRILHWDYYPMTSLPSKFNLKFLVKIILKHSELEKLWE |
| HMMPfam: PF07725 IPR011713
|
671-690 | LRR_3 Leucine-rich repeat 3
|
FLVKIILKHSELEKLWEGIQ |
List of Contributions
There has not been any contribution yet.
