PRGDB00046989 (disease resistance protein (TIR-NBS-LRR class), putative)
| disease resistance protein (TIR-NBS-LRR class), putative | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 18418481 (NM_121802) |
| Gene Class | TNL |
| Domain Type | LRR, LRR, NBS, LRR, LRR, TIR, Others |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGGCTTCTGTTTCGTCCTCGTCTTCTTTTTCTGATCGCCATAGTTATCATGTGTTCCCTAGCTTCTGCGGGGAAGATGTACGTAGAAACTTTCTAAGTCATTTACACAAGGAGCTGCAACATAATGGAATTGATGCATTTAAAGATGGTGGAATCAAGAGAAGTCGTTCCATATGGCCTGAGCTTAAACAAGCTATATGGGAATCAAAGATTTTCATTGTTGTTCTTTCCAAGAACTACGCTGGTTCGTGCTGGTGCTTAGACGAATTGGTCGAGATCATGGAGTGCAGGGAAGTTGTTGGGAAGACATTGGTGCCGATTTTCTATGATGTGGATCCATCTAGTGTAAGAAAACAGACTGGAGATTTTGGAAAGGCTTTTGACAAGATTTGTGATGTGAGAACAGAGGAAGAGAGGCAGAGATGGAGGCAAGCTTTGACGAATGTTGGTAATATTGCCGGCGAGTGCTCTTCGAAATGGGACAATGACGCCAAAATGATTGAAAAGATCGTTGCTTATGTTTCTGAAGAGCTATTTTGCTTCACTTCTTCGACGGATTTCGAAGATTTACTTGGATTGGAAGCTCATGTTGCAAATTTGAAATCAATGTTAGGTCTAGAGTCTAATGAAGTGAAGATGATAGGTGTTTGGGGTCCTGCTGGAATAGGGAAGACCACTATCACGAGGATTTTATACAATCAACTTTCTTCATCTAATGATGACGACTTTCAATTGTTCATTTTCATGGAGAATGTTAAGGGAAGCTATAGGAGAAAGGAAATCGATGGTTATAGCATGAAGTTGCATTTACGAGAAAGGTTTCTCTCTGAAATTACCACCCAAAGAAAGATAAAGGTAAGCCATTTAGGTGTAGCACAAGAAAGGCTAAAGAATCAGAAAGCTCTTATTGTTCTTGATGATGTTGATGAACTGGAACAACTACGTGCCTTGGCAGATCAAACTCAATGGGTTGGTAATGGAACCAGAATTTTAGTTACTACAGAAGATAGACAGCTTTTGAAGGCTCATGGGATTACTCATGTATATGAAGTGGATTATCCATCTAGAGATGAAGCCTTAAAGATCTTGTGTCAATGTGCTTTCGGAAAAAACTCGGCACCAGAAGGATACAATGATCTAGCTGTTGAAGTTGTGGAACTTGCAGGATATCTTCCTTTAGGTCTCAGCGTTTTAGGTGCATCTTTGCGAGGGATGAGTAAGAAAGAGTGGATAAACGCTCTACCGCGACTTAGAACTAGTTTGAATGGGAAAATAGAGAAACTACTAAGAGTATGTTATGAAGGGTTAGATGAGAAAGATAAGGCTATCTTTCTTCATATCGCGTGCTTATTCAATGGCAAGAATGTTGATCGTGTGAAGCTGTTGCTTGCTAAGAGTGCATTGGATGTAGAATTTGGACTTAAAGTTCTTGTTGACAGATCTCTTATACACATAGATGCTGATGGATATATAGTCATGCATTGTTTGCTACAACAATTGGGTAAAGAAATCACTCGGGGACAGTGTCTCGACGAGCCCGGGAAACGTAAGTTTCTAGTTGATTCTTTGGAGATTTCAGATGTTCTTGCAGATGAAACCGGTACAGAAACTGTTTTAGGAATATCATTAGATATGTCTGAAATTGAAGATCAAGTGTATGTAAGTGAAAAAGCCTTTGAGAAAATGCCTAATCTCCAATTCTTGTGGCTATACAAGAATTTCCCAGATGAAGCAGTCAAGTTGTACTTACCTCACGGTTTGGATTATCTACCACGTAAACTTAGATTACTACATTGGGATTCGTATCCGAAAAAATGTTTGCCTTCTAAGTTTCGACCCGAATTTCTTGTGGAACTTACTATGAGAGATAGCAAGCTGGAGAAGCTCTGGGAAGGTATTCAGCCACTGAAAAGCCTCAAGCGTATGGATCTGAGTGCATCCACAAAGATTAAAGATATTCCAAACCTATCAAGAGCAACAAATCTGGAGAAGTTGTATCTTAGGTTCTGCAAAAATTTGGTCATAGTTCCTTCGTCTTGTCTACAGAATCTTCATAAGCTCAAAGTCTTGGACATGTCTTGTTGCATAAAACTGAAGAGTCTGCCAGACAACATCAACTTGAAATCCCTCAGTGTCCTTAATATGAGAGGATGCTCGAAGCTGAATAACTTTCCTTTGATTTCAACGCAGATTCAGTTCATGTCTCTAGGCGAAACTGCGATAGAGAAAGTGCCTTCAGTAATCAAGTTATGTTCTCGGCTTGTCTCATTGGAGATGGCGGGATGTAAGAACCTTAAAACATTACCATATTTGCCTGCAAGTATAGAGATCGTGGACATATAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein (TIR-NBS-LRR class), putative | disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana]. | MASVSSSSSFSDRHSYHVFPSFCGEDVRRNFLSHLHKELQHNGIDAFKDGGIKRSRSIWPELKQAIWESKIFIVVLSKNYAGSCWCLDELVEIMECREVVGKTLVPIFYDVDPSSVRKQTGDFGKAFDKICDVRTEEERQRWRQALTNVGNIAGECSSKWDNDAKMIEKIVAYVSEELFCFTSSTDFEDLLGLEAHVANLKSMLGLESNEVKMIGVWGPAGIGKTTITRILYNQLSSSNDDDFQLFIFMENVKGSYRRKEIDGYSMKLHLRERFLSEITTQRKIKVSHLGVAQERLKNQKALIVLDDVDELEQLRALADQTQWVGNGTRILVTTEDRQLLKAHGITHVYEVDYPSRDEALKILCQCAFGKNSAPEGYNDLAVEVVELAGYLPLGLSVLGASLRGMSKKEWINALPRLRTSLNGKIEKLLRVCYEGLDEKDKAIFLHIACLFNGKNVDRVKLLLAKSALDVEFGLKVLVDRSLIHIDADGYIVMHCLLQQLGKEITRGQCLDEPGKRKFLVDSLEISDVLADETGTETVLGISLDMSEIEDQVYVSEKAFEKMPNLQFLWLYKNFPDEAVKLYLPHGLDYLPRKLRLLHWDSYPKKCLPSKFRPEFLVELTMRDSKLEKLWEGIQPLKSLKRMDLSASTKIKDIPNLSRATNLEKLYLRFCKNLVIVPSSCLQNLHKLKVLDMSCCIKLKSLPDNINLKSLSVLNMRGCSKLNNFPLISTQIQFMSLGETAIEKVPSVIKLCSRLVSLEMAGCKNLKTLPYLPASIEIVDI |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
4-155 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VSSSSSFSDRHSYHVFPSFCGEDVRRNFLSHLHKELQHNGIDAFKDGGIKRSRSIWPELKQAIWESKIFIVVLSKNYAGSCWCLDELVEIMECREVVGKTLVPIFYDVDPSSVRKQTGDFGKAFDKICDVRTEEERQRWRQALTNVGNIAGE |
| Gene3D: G3DSA:3.40.50.10140 | 12-149 | G3DSA:3.40.50.10140 | DRHSYHVFPSFCGEDVRRNFLSHLHKELQHNGIDAFKDGGIKRSRSIWPELKQAIWESKIFIVVLSKNYAGSCWCLDELVEIMECREVVGKTLVPIFYDVDPSSVRKQTGDFGKAFDKICDVRTEEERQRWRQALTNV |
| ProfileScan: PS50104 IPR000157
|
14-152 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
HSYHVFPSFCGEDVRRNFLSHLHKELQHNGIDAFKDGGIKRSRSIWPELKQAIWESKIFIVVLSKNYAGSCWCLDELVEIMECREVVGKTLVPIFYDVDPSSVRKQTGDFGKAFDKICDVRTEEERQRWRQALTNVGNI |
| HMMSmart: SM00255 IPR000157
|
15-152 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
SYHVFPSFCGEDVRRNFLSHLHKELQHNGIDAFKDGGIKRSRSIWPELKQAIWESKIFIVVLSKNYAGSCWCLDELVEIMECREVVGKTLVPIFYDVDPSSVRKQTGDFGKAFDKICDVRTEEERQRWRQALTNVGNI |
| HMMPfam: PF01582 IPR000157
|
18-147 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFPSFCGEDVRRNFLSHLHKELQHNGIDAFKDGGIKRSRSIWPELKQAIWESKIFIVVLSKNYAGSCWCLDELVEIMECREVVGKTLVPIFYDVDPSSVRKQTGDFGKAFDKICDVRTEEERQRWRQALT |
| HMMPanther: PTHR11017 | 39-780 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LQHNGIDAFKDGGIKRSRSIWPELKQAIWESKIFIVVLSKNYAGSCWCLDELVEIMECREVVGKTLVPIFYDVDPSSVRKQTGDFGKAFDKICDVRTEEERQRWRQALTNVGNIAGECSSKWDNDAKMIEKIVAYVSEELFCFTSSTDFEDLLGLEAHVANLKSMLGLESNEVKMIGVWGPAGIGKTTITRILYNQLSSSNDDDFQLFIFMENVKGSYRRKEIDGYSMKLHLRERFLSEITTQRKIKVSHLGVAQERLKNQKALIVLDDVDELEQLRALADQTQWVGNGTRILVTTEDRQLLKAHGITHVYEVDYPSRDEALKILCQCAFGKNSAPEGYNDLAVEVVELAGYLPLGLSVLGASLRGMSKKEWINALPRLRTSLNGKIEKLLRVCYEGLDEKDKAIFLHIACLFNGKNVDRVKLLLAKSALDVEFGLKVLVDRSLIHIDADGYIVMHCLLQQLGKEITRGQCLDEPGKRKFLVDSLEISDVLADETGTETVLGISLDMSEIEDQVYVSEKAFEKMPNLQFLWLYKNFPDEAVKLYLPHGLDYLPRKLRLLHWDSYPKKCLPSKFRPEFLVELTMRDSKLEKLWEGIQPLKSLKRMDLSASTKIKDIPNLSRATNLEKLYLRFCKNLVIVPSSCLQNLHKLKVLDMSCCIKLKSLPDNINLKSLSVLNMRGCSKLNNFPLISTQIQFMSLGETAIEKVPSVIKLCSRLVSLEMAGCKNLKTLPYLPASIEIVDI |
| HMMPanther: PTHR11017:SF20 | 39-780 | PTHR11017:SF20,SUBFAMILY NOT NAMED | LQHNGIDAFKDGGIKRSRSIWPELKQAIWESKIFIVVLSKNYAGSCWCLDELVEIMECREVVGKTLVPIFYDVDPSSVRKQTGDFGKAFDKICDVRTEEERQRWRQALTNVGNIAGECSSKWDNDAKMIEKIVAYVSEELFCFTSSTDFEDLLGLEAHVANLKSMLGLESNEVKMIGVWGPAGIGKTTITRILYNQLSSSNDDDFQLFIFMENVKGSYRRKEIDGYSMKLHLRERFLSEITTQRKIKVSHLGVAQERLKNQKALIVLDDVDELEQLRALADQTQWVGNGTRILVTTEDRQLLKAHGITHVYEVDYPSRDEALKILCQCAFGKNSAPEGYNDLAVEVVELAGYLPLGLSVLGASLRGMSKKEWINALPRLRTSLNGKIEKLLRVCYEGLDEKDKAIFLHIACLFNGKNVDRVKLLLAKSALDVEFGLKVLVDRSLIHIDADGYIVMHCLLQQLGKEITRGQCLDEPGKRKFLVDSLEISDVLADETGTETVLGISLDMSEIEDQVYVSEKAFEKMPNLQFLWLYKNFPDEAVKLYLPHGLDYLPRKLRLLHWDSYPKKCLPSKFRPEFLVELTMRDSKLEKLWEGIQPLKSLKRMDLSASTKIKDIPNLSRATNLEKLYLRFCKNLVIVPSSCLQNLHKLKVLDMSCCIKLKSLPDNINLKSLSVLNMRGCSKLNNFPLISTQIQFMSLGETAIEKVPSVIKLCSRLVSLEMAGCKNLKTLPYLPASIEIVDI |
| superfamily: SSF52540 | 173-425 | SSF52540 | YVSEELFCFTSSTDFEDLLGLEAHVANLKSMLGLESNEVKMIGVWGPAGIGKTTITRILYNQLSSSNDDDFQLFIFMENVKGSYRRKEIDGYSMKLHLRERFLSEITTQRKIKVSHLGVAQERLKNQKALIVLDDVDELEQLRALADQTQWVGNGTRILVTTEDRQLLKAHGITHVYEVDYPSRDEALKILCQCAFGKNSAPEGYNDLAVEVVELAGYLPLGLSVLGASLRGMSKKEWINALPRLRTSLNGKI |
| Gene3D: G3DSA:3.40.50.300 | 178-342 | G3DSA:3.40.50.300 | LFCFTSSTDFEDLLGLEAHVANLKSMLGLESNEVKMIGVWGPAGIGKTTITRILYNQLSSSNDDDFQLFIFMENVKGSYRRKEIDGYSMKLHLRERFLSEITTQRKIKVSHLGVAQERLKNQKALIVLDDVDELEQLRALADQTQWVGNGTRILVTTEDRQLLKA |
| HMMPfam: PF00931 IPR002182
|
194-461 | NB-ARC,NBS NB-ARC
|
EAHVANLKSMLGLESNEVKMIGVWGPAGIGKTTITRILYNQLSSSNDDDFQLFIFMENVKGSYRRKEIDGYSMKLHLRERFLSEITTQRKIKVSHLGVAQERLKNQKALIVLDDVDELEQLRALADQTQWVGNGTRILVTTEDRQLLKAHGITHVYEVDYPSRDEALKILCQCAFGKNSAPEGYNDLAVEVVELAGYLPLGLSVLGASLRGMSKKEWINALPRLRTSLNGKIEKLLRVCYEGLDEKDKAIFLHIACLFNGKNVDRVKL |
| HMMSmart: SM00382 IPR003593
|
210-354 | AAA,NBS AAA+ ATPase domain
|
EVKMIGVWGPAGIGKTTITRILYNQLSSSNDDDFQLFIFMENVKGSYRRKEIDGYSMKLHLRERFLSEITTQRKIKVSHLGVAQERLKNQKALIVLDDVDELEQLRALADQTQWVGNGTRILVTTEDRQLLKAHGITHVYEVDYP |
| FPrintScan: PR00364 IPR000767
|
213-228 | DISEASERSIST Disease resistance protein
|
MIGVWGPAGIGKTTIT |
| FPrintScan: PR00364 IPR000767
|
295-309 | DISEASERSIST Disease resistance protein
|
RLKNQKALIVLDDVD |
| FPrintScan: PR00364 IPR000767
|
388-402 | DISEASERSIST Disease resistance protein
|
AGYLPLGLSVLGASL |
| superfamily: SSF46785 | 423-530 | SSF46785 | GKIEKLLRVCYEGLDEKDKAIFLHIACLFNGKNVDRVKLLLAKSALDVEFGLKVLVDRSLIHIDADGYIVMHCLLQQLGKEITRGQCLDEPGKRKFLVDSLEISDVLA |
| superfamily: SSF52058 | 504-780 | SSF52058,LRR | ITRGQCLDEPGKRKFLVDSLEISDVLADETGTETVLGISLDMSEIEDQVYVSEKAFEKMPNLQFLWLYKNFPDEAVKLYLPHGLDYLPRKLRLLHWDSYPKKCLPSKFRPEFLVELTMRDSKLEKLWEGIQPLKSLKRMDLSASTKIKDIPNLSRATNLEKLYLRFCKNLVIVPSSCLQNLHKLKVLDMSCCIKLKSLPDNINLKSLSVLNMRGCSKLNNFPLISTQIQFMSLGETAIEKVPSVIKLCSRLVSLEMAGCKNLKTLPYLPASIEIVDI |
| Gene3D: G3DSA:3.80.10.10 | 554-770 | G3DSA:3.80.10.10 | VSEKAFEKMPNLQFLWLYKNFPDEAVKLYLPHGLDYLPRKLRLLHWDSYPKKCLPSKFRPEFLVELTMRDSKLEKLWEGIQPLKSLKRMDLSASTKIKDIPNLSRATNLEKLYLRFCKNLVIVPSSCLQNLHKLKVLDMSCCIKLKSLPDNINLKSLSVLNMRGCSKLNNFPLISTQIQFMSLGETAIEKVPSVIKLCSRLVSLEMAGCKNLKTLPY |
| HMMPfam: PF07725 IPR011713
|
615-634 | LRR_3 Leucine-rich repeat 3
|
FLVELTMRDSKLEKLWEGIQ |
| HMMPfam: PF13855 | 660-718 | LRR_8,Leucine rich repeat | TNLEKLYLRFCKNLVIVPSSCLQNLHKLKVLDMSCCIKLKSLPDNINLKSLSVLNMRGC |
| FPrintScan: PR00364 IPR000767
|
682-698 | DISEASERSIST Disease resistance protein
|
QNLHKLKVLDMSCCIKL |
List of Contributions
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