PRGDB00047004 (disease resistance protein (CC-NBS-LRR class), putative)

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disease resistance protein (CC-NBS-LRR class), putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 18406478 (NM_104671)
Gene Class CNL
Domain Type LRR, NBS, LRR, LRR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana disease resistance protein (CC-NBS-LRR class), putative (AT1G59780) mRNA, complete cds.

DNA Sequence

ATGCAGGACTTATATATGGTTGATTCAATTGTATCGTTCGGTGTTGAAAAGCTTTGGAAACTCCTGAGCCAAGAATATGAGCGATTCCAGGGAGTTGAAGAGCAAATTACGGAGCTAAGAGATGATCTGAAGATGTTAATGGCCTTTCTATCTGATGCAGATGCAAAGAAACAAACCCGTGCACTTGCAAGAAACTGCCTTGAAGAGATAAAGGAAATCACTTATGATGCTGAGGATATAATAGAAATCTTTCTTCTAAAAGGCAGTGTCAACATGAGAAGCCTTGCTTGCTTTCCAGGTGGTCGTAGGGAGATTGCCTTGCAAATCACAAGCATCAGTAAGAGGATCTCCAAGGTTATCCAAGTTATGCAGAATTTAGGCATAAAATCAGACATTATGGACGGTGTGGATTCGCATGCTCAACTGGAAAGGAAAAGGGAGTTGCGTCATACATTTTCTAGTGAATCTGAGAGCAATCTTGTTGGTTTGGAGAAAAATGTTGAGAAATTGGTTGAAGAATTGGTGGGAAACGATAGCAGTCATGGGGTATCTATTACTGGTTTGGGTGGTCTTGGCAAAACCACCCTTGCACGGCAAATTTTTGATCATGATAAGGTAAAAAGTCATTTTGATGGACTTGCGTGGGTGTGTGTATCACAAGAGTTTACACGGAAAGATGTGTGGAAAACCATCTTGGGGAATCTTAGTCCTAAATATAAAGACTCAGACTTGCCGGAAGACGATATTCAGAAGAAACTCTTTCAGTTGTTGGAAACAAAAAAAGCTTTGATCGTCTTTGATGACCTATGGAAAAGAGAGGACTGGTACAGAATAGCGCCCATGTTTCCAGAGAGAAAAGCTGGTTGGAAGGTACTACTTACTTCACGCAACGATGCAATACATCCACATTGTGTGACTTTCAAACCAGAACTCTTAACTCATGACGAATGTTGGAAACTTTTACAAAGGATAGCATTTTCTAAGCAAAAAACAATAACTGGATATATAATTGATAAAGAAATGGTAAAGATGGCTAAGGAGATGACAAAACATTGTAAAAGACTACCATTGGCTGTCAAACTGTTAGGCGGGTTATTAGATGCCAAACACACATTGCGTCAGTGGAAACTGATATCTGAGAATATTATATCTCACATAGTTGTTGGAGGGACTAGTTCCAATGAAAACGATAGCAGTTCGGTTAACCATGTTCTGTCTTTGAGCTTTGAAGGATTGCCTGGTTATTTGAAGCACTGCTTACTCTACCTAGCCTCTTATCCCGAAGATCATGAAATCGAAATAGAGAGATTGTCTTATGTCTGGGCTGCAGAAGGAATAACATATCCTGGGAATTACGAGGGAGCTACCATTCGAGATGTTGCGGATCTCTACATAGAAGAGTTAGTGAAGAGAAATATGGTTATTTCCGAAAGAGACGCGTTGACTTCGAGATTTGAAAAATGTCAGTTGCATGACTTGATGAGGGAGATTTGTTTGTTAAAAGCCAAGGAAGAGAACTTTTTACAGATTGTTACTGATCCAACCAGCAGCTCAAGCGTACACTCTCTAGCTTCTAGCAGATCACGTAGACTCGTAGTGTACAACACCAGTATTTTTAGTGGAGAGAACGATATGAAGAATTCCAAACTTAGATCTCTCTTGTTTATTCCAGTTGGGTATAGTAGGTTTTCGATGGGATCAAACTTCATAGAGTTACCATTGTTGAGGGTTTTAGATCTCGATGGAGCTAAATTTAAAGGAGGGAAGTTACCCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGAGTTTATATCAGGCATCTGTAACTTATTTACCTTCATCTTTGCGGAACCTGAAGTCGCTGCTCTATCTCAATCTACGTATAAATTCTGGTCAGCTGATTAACGTGCCCAATGTCTTTAAAGAGATGCTAGAACTGAGATACCTCAGCTTACCATGGGAAAGAAGTAGTTTGACAAAGTTGGAACTGGGTAATCTACTCAAATTGGAGACGTTGATAAATTTCTCAACAAAGGATAGCAGTGTGACAGATCTTCACCGTATGACAAAGCTAAGGACCCTCCAAATCTTAATCAGTGGCGAGGGGTTGCATATGGAAACTCTGTCTTCAGCTCTAAGTATGTTGGGACACTTGGAAGATCTTACAGTAACACCTTCCGAGAATTCCGTTCAGTTCAAGCACCCGAAGTTGATATATAGGCCGATGTTACCTGATGTGCAACATTTTCCTTCTCATCTTACAACCATATCTCTAGTATATTGTTTTTTGGAGGAGGATCCGATGCCAACTCTAGAGAAACTGCTACAACTGAAAGTGGTTTCTTTATGGTACAACGCCTATGTTGGGAGGAGAATGGTTTGCACCGGCGGTGGGTTTCCTCCATTGCACAGGCTTGAAATATGGGGACTAGATGCCTTGGAAGAGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTCATACTCTGCATATTGTAGACTGTAAGAAATTAAAGGAGATTCCAGATGGGCTGCGATTTATCAGTTCATTAAAGGAATTGGCTATCCGCACAAATGAAAAAGTATTTCAGAAGAAGGTATCCAAAGGAGGAGAAGATTACTATAAAATGCAACACGTCCCTCTTATTCGATATAACTGGCCACAAGAACCAGAAAACAACGAGGTGATATATTCTTTCCCTAGTCCAATCATCTGA


Protein sequences

Name Description Sequence
disease resistance protein (CC-NBS-LRR class), putative disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana].

MQDLYMVDSIVSFGVEKLWKLLSQEYERFQGVEEQITELRDDLKMLMAFLSDADAKKQTRALARNCLEEIKEITYDAEDIIEIFLLKGSVNMRSLACFPGGRREIALQITSISKRISKVIQVMQNLGIKSDIMDGVDSHAQLERKRELRHTFSSESESNLVGLEKNVEKLVEELVGNDSSHGVSITGLGGLGKTTLARQIFDHDKVKSHFDGLAWVCVSQEFTRKDVWKTILGNLSPKYKDSDLPEDDIQKKLFQLLETKKALIVFDDLWKREDWYRIAPMFPERKAGWKVLLTSRNDAIHPHCVTFKPELLTHDECWKLLQRIAFSKQKTITGYIIDKEMVKMAKEMTKHCKRLPLAVKLLGGLLDAKHTLRQWKLISENIISHIVVGGTSSNENDSSSVNHVLSLSFEGLPGYLKHCLLYLASYPEDHEIEIERLSYVWAAEGITYPGNYEGATIRDVADLYIEELVKRNMVISERDALTSRFEKCQLHDLMREICLLKAKEENFLQIVTDPTSSSSVHSLASSRSRRLVVYNTSIFSGENDMKNSKLRSLLFIPVGYSRFSMGSNFIELPLLRVLDLDGAKFKGGKLPSSIGKLIHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQLINVPNVFKEMLELRYLSLPWERSSLTKLELGNLLKLETLINFSTKDSSVTDLHRMTKLRTLQILISGEGLHMETLSSALSMLGHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQHFPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIWGLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRTNEKVFQKKVSKGGEDYYKMQHVPLIRYNWPQEPENNEVIYSFPSPII

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
7-905 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VDSIVSFGVEKLWKLLSQEYERFQGVEEQITELRDDLKMLMAFLSDADAKKQTRALARNCLEEIKEITYDAEDIIEIFLLKGSVNMRSLACFPGGRREIALQITSISKRISKVIQVMQNLGIKSDIMDGVDSHAQLERKRELRHTFSSESESNLVGLEKNVEKLVEELVGNDSSHGVSITGLGGLGKTTLARQIFDHDKVKSHFDGLAWVCVSQEFTRKDVWKTILGNLSPKYKDSDLPEDDIQKKLFQLLETKKALIVFDDLWKREDWYRIAPMFPERKAGWKVLLTSRNDAIHPHCVTFKPELLTHDECWKLLQRIAFSKQKTITGYIIDKEMVKMAKEMTKHCKRLPLAVKLLGGLLDAKHTLRQWKLISENIISHIVVGGTSSNENDSSSVNHVLSLSFEGLPGYLKHCLLYLASYPEDHEIEIERLSYVWAAEGITYPGNYEGATIRDVADLYIEELVKRNMVISERDALTSRFEKCQLHDLMREICLLKAKEENFLQIVTDPTSSSSVHSLASSRSRRLVVYNTSIFSGENDMKNSKLRSLLFIPVGYSRFSMGSNFIELPLLRVLDLDGAKFKGGKLPSSIGKLIHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQLINVPNVFKEMLELRYLSLPWERSSLTKLELGNLLKLETLINFSTKDSSVTDLHRMTKLRTLQILISGEGLHMETLSSALSMLGHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQHFPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIWGLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRTNEKVFQKKVSKGGEDYYKMQHVPLIRYNWPQEPENNEVIYSFPSPI

HMMPanther: PTHR23155:SF232
7-905 PTHR23155:SF232,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

VDSIVSFGVEKLWKLLSQEYERFQGVEEQITELRDDLKMLMAFLSDADAKKQTRALARNCLEEIKEITYDAEDIIEIFLLKGSVNMRSLACFPGGRREIALQITSISKRISKVIQVMQNLGIKSDIMDGVDSHAQLERKRELRHTFSSESESNLVGLEKNVEKLVEELVGNDSSHGVSITGLGGLGKTTLARQIFDHDKVKSHFDGLAWVCVSQEFTRKDVWKTILGNLSPKYKDSDLPEDDIQKKLFQLLETKKALIVFDDLWKREDWYRIAPMFPERKAGWKVLLTSRNDAIHPHCVTFKPELLTHDECWKLLQRIAFSKQKTITGYIIDKEMVKMAKEMTKHCKRLPLAVKLLGGLLDAKHTLRQWKLISENIISHIVVGGTSSNENDSSSVNHVLSLSFEGLPGYLKHCLLYLASYPEDHEIEIERLSYVWAAEGITYPGNYEGATIRDVADLYIEELVKRNMVISERDALTSRFEKCQLHDLMREICLLKAKEENFLQIVTDPTSSSSVHSLASSRSRRLVVYNTSIFSGENDMKNSKLRSLLFIPVGYSRFSMGSNFIELPLLRVLDLDGAKFKGGKLPSSIGKLIHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQLINVPNVFKEMLELRYLSLPWERSSLTKLELGNLLKLETLINFSTKDSSVTDLHRMTKLRTLQILISGEGLHMETLSSALSMLGHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQHFPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIWGLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRTNEKVFQKKVSKGGEDYYKMQHVPLIRYNWPQEPENNEVIYSFPSPI

superfamily: SSF52540
141-387 SSF52540

QLERKRELRHTFSSESESNLVGLEKNVEKLVEELVGNDSSHGVSITGLGGLGKTTLARQIFDHDKVKSHFDGLAWVCVSQEFTRKDVWKTILGNLSPKYKDSDLPEDDIQKKLFQLLETKKALIVFDDLWKREDWYRIAPMFPERKAGWKVLLTSRNDAIHPHCVTFKPELLTHDECWKLLQRIAFSKQKTITGYIIDKEMVKMAKEMTKHCKRLPLAVKLLGGLLDAKHTLRQWKLISENIISHIV

HMMPfam: PF00931
IPR002182
164-448 NB-ARC,NBS
NB-ARC

EKNVEKLVEELVGNDSSHGVSITGLGGLGKTTLARQIFDHDKVKSHFDGLAWVCVSQEFTRKDVWKTILGNLSPKYKDSDLPEDDIQKKLFQLLETKKALIVFDDLWKREDWYRIAPMFPERKAGWKVLLTSRNDAIHPHCVTFKPELLTHDECWKLLQRIAFSKQKTITGYIIDKEMVKMAKEMTKHCKRLPLAVKLLGGLLDAKHTLRQWKLISENIISHIVVGGTSSNENDSSSVNHVLSLSFEGLPGYLKHCLLYLASYPEDHEIEIERLSYVWAAEGITY

Gene3D: G3DSA:3.40.50.300
168-262 G3DSA:3.40.50.300

EKLVEELVGNDSSHGVSITGLGGLGKTTLARQIFDHDKVKSHFDGLAWVCVSQEFTRKDVWKTILGNLSPKYKDSDLPEDDIQKKLFQLLETKKA

FPrintScan: PR00364
IPR000767
182-197 DISEASERSIST
Disease resistance protein

GVSITGLGGLGKTTLA

FPrintScan: PR00364
IPR000767
256-270 DISEASERSIST
Disease resistance protein

LLETKKALIVFDDLW

Gene3D: G3DSA:3.40.50.300
309-320 G3DSA:3.40.50.300

PELLTHDECWKL

FPrintScan: PR00364
IPR000767
352-366 DISEASERSIST
Disease resistance protein

CKRLPLAVKLLGGLL

superfamily: SSF52058
489-860 SSF52058,LRR

QLHDLMREICLLKAKEENFLQIVTDPTSSSSVHSLASSRSRRLVVYNTSIFSGENDMKNSKLRSLLFIPVGYSRFSMGSNFIELPLLRVLDLDGAKFKGGKLPSSIGKLIHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQLINVPNVFKEMLELRYLSLPWERSSLTKLELGNLLKLETLINFSTKDSSVTDLHRMTKLRTLQILISGEGLHMETLSSALSMLGHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQHFPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIWGLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRTN

Gene3D: G3DSA:3.80.10.10
567-722 G3DSA:3.80.10.10

SNFIELPLLRVLDLDGAKFKGGKLPSSIGKLIHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQLINVPNVFKEMLELRYLSLPWERSSLTKLELGNLLKLETLINFSTKDSSVTDLHRMTKLRTLQILISGEGLHMETLSSALSMLGHLED

FPrintScan: PR00364
IPR000767
570-586 DISEASERSIST
Disease resistance protein

IELPLLRVLDLDGAKFK

Gene3D: G3DSA:3.80.10.10
758-861 G3DSA:3.80.10.10

ISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIWGLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRTNE






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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