PRGDB00047061 (disease resistance protein (TIR-NBS-LRR class), putative)

From PRG Wiki
Jump to: navigation, search
disease resistance protein (TIR-NBS-LRR class), putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 18422491 (NM_123855)
Gene Class TNL
Domain Type LRR, LRR, NBS, LRR, LRR, TIR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana disease resistance protein (TIR-NBS-LRR class), putative (AT5G44870) mRNA, complete cds.

DNA Sequence

ATGGCAGCATCTTCCGAAATACTCCCGGAGTCGTGGCAAGTGTTCATCAATTTCCGAGGAGCAGATTTGCGCAACGGTTTCATCAGCCATCTGGCGGGAGCTTTGACCTCAGCTGGAATCACATACTACATCGACACGGAAGAAGTCCCGAGCGAAGATCTCACTGTCCTTTTCAAGAGGATAGAGGAATCGGAAATCGCACTGTCCATCTTCTCGAGCAATTATGCTGAGTCAAAATGGTGTTTGGACGAGCTCGTGAAGATCATGGAACAAGTAAAGAAAGGAAAGCTCAGAATCATGCCCGTCTTCTTCAACGTGAAGCCAGAGGAGGTGAGAGAGCAGAACGGAGAGTTCGGACTTAAGCTTTACGGAGAAGGTAAAAGCAAACGACCCAACATACCTAATTGGGAGAACGCTTTGCGGTCTGTCCCAAGCAAGATAGGCTTGAATTTGGCGAATTTTAGAAACGAGAAGGAACTCCTTGACAAGATCATTGACTCCATCAAAAAAGTACTTGCCCGAATTACACGAGCAAGCAGAGTAGCAGAATCTCTAAACGGGATCTCAAAAGACTCAGAGGCAAAGAATGTAGACACATTTTCGCCAAACTCCAGTGATTTTCCATCTACTTCCATTGACGACGACCTCAGTATCAACTCGCCTCAGTACCAAGCCACAATTCCCCCCGCAAGCAGGGAAGGTGAACGTCTCAACACGATCTCTACTGTAAGTTCAACTGGTAGTATTGAACATCCTCCACCCAACTACGGAATAGAACCACGCCTTAAGGAGATGGAAGAAAAGTTAGATTTTGATAGCCTCGAAACTAAAACTGTTGGAATTGTTGGGATGCCTGGGATTGGTAAAACCACTCTTGCAGAAACGTTGTATAGAAAGTGGGAACACAAGTTTGAGAGGAGTATGTTTTTCCCAGATGCCAGTAAGATGGCGAATGAACACGGAATGTGTTGGCTGCAGAAGAGATTATTGGAAGAGCTGTTGAAGGATACTAATCTCAACATAGGATATACAACGAATGAACATGAGTTTTGTAAGGATGTTCTTCTCCTAAAGAAAGTTTTTCTTGTCATAGATAATGTTAGTAGCGAGGAACAGATCGAAACTCTTTTTGGTAAATGGAATTGGATTAAAAATGGAAGCAAGATTGTTATTACGTCAAGTGATGAGTCAATGCTCAAGGGTTTCGTTAAAGATACTTATGTAGTCCCAAGTTTGAACAGCAGAGACAGTCTACTGTGGTTTACTAATCATGCATTTGGTTTGGATGATGCCCAGGGAAACTTGGTAAAGTTGTCCAAACACTTTCTGAATTATGCCAAAGGCAACCCACTAGCCCTCGGAGCTTTTGGTGTAGAACTTTGTGGGAAAGACAAGGCTGATTGGGAAAAGAGAATAAAAACATTGACACTAATTTCCAATAAGATGATCCAAGATGTCTTGAGAAGAAGGTATGATGAACTCACAGAGAGGCAGAAAGATATTTTTCTTGACGTCGCATGTTTCTTCAAATCAGAGAATGAAAGTTATGTACGACACGTGGTGAATTCATGTGATTCTGAGTCTACTAAGAGTTGGGATGAAATAACAGATCTCAAAGGAAAGTTTCTTGTCAATATTTCTGGTGGTCGAGTTGAGATGCATGATATACTATGCACATTCGCCAAGGAACTTGCTTCACAAGCATTGACTGAAGATACAAGGGTTCATCTCAGGCTGTGGAACTATCAAGATATCATGTGGTTTCTCAACAATGAATTGGAAATGGAAAATGTCAGAGGTATTTTCTTAGACATGTCTAAAGTTCCGGAGGAAATGACATTTGATGGTAACATCTTTAGCAATATGTGCAATCTTCGATATCTCAAAATATACAGTTCTGTTTGCCATAAGGAAGGCGAAGGTATCTTCAAATTTGACACAGTTAGGGAAATTCAGTTACCATTAGACAAGGTACGCTATCTCCACTGGATGAAATATCCATGGGAGAAACTTCCATCAGACTTCAACCCGGAGAATCTCGTTGATCTTGAACTGCCTTATAGCTCCATTAAGAAAGTTTGGGAGGGTGTTAAGGATACCCCGATACTAAAGTGGGCCAATCTAAGCTATTCAAGTAAGTTGACTAACCTTTTAGGGTTGTCAAATGCTAAAAATCTTGAAAGATTGAATCTTGAAGGTTGCACAAGTTTGCTTAAACTGCCCCAAGAGATGGAGAACATGAAAAGTCTTGTCTTCCTGAACATGAGACGTTGCACTAGTCTCACATGTCTTCAAAGTATTAAAGTGAGCTCTCTGAAAATTCTCATACTCAGTGACTGCTCAAAACTTGAGGAATTTGAGGTGATTTCGGAAAATCTGGAAGAATTATATTTAGATGGAACTGCAATAAAGGGACTTCCTCCAGCGGCCGGGGATCTGACGAGACTTGTCGTCTTAAATATGGAAGGCTGTACAGAACTGGAGAGTCTTCCCAAACGTCTTGGAAAACAGAAAGCTCTTCAAGAACTGGTACTCTCTGGATGTTCAAAGCTCGAGAGCGTTCCAACGGACGTAAAAGACATGAAACATCTACGGCTCTTATTGCTTGACGGCACAAGAATCAGAAAGATCCCGAAGATAAAGTCGCTAAAGTGTTTGTGCTTAAGTAGAAATATTGCAATGGTCAATCTACAAGATAATCTCAAAGATTTCTCTAATCTGAAATGTCTTGTCATGAAGAACTGCGAGAATCTCAGATATCTTCCTTCGCTTCCAAAATGTCTTGAGTACCTAAACGTATATGGTTGTGAAAGACTAGAATCAGTTGAGAATCCACTGGTTGCTGATAGGTTAACGTTATTCCTTGATAGATCTGAGGAATTACGTTCCACTTTCTTGTTCACTAATTGCCACAATCTGTTTCAAGATGCAAAGGACTCAATCTCAACCTACGCGAAATGGAAATGCCACCGACTTGCAGTTGAATGCTACGAACAGGACATAGTTTCTGGAGCTTTTTTCAACACTTGCTATCCTGGATATATAGTCCCTTCGTGGTTCGATCACCAAGCAGTTGGATCAGTCTTAGAGCCAAGGCTGGAACCACATTGGTATAACACTATGCTTTCTGGGATAGCTCTATGTGCAGTTGTATCATTCCATGAGAACCAAGATCCGATCATCGGCAGTTTCTCAGTAAAATGCACATTGCAATTTGAAAACGAAGATGGGTCTCTTCGCTTTGATTGTGATATCGGATGTTTGAACGAACCAGGAATGATTGAGGCAGACCATGTTTTTATCGGCTATGTCACTTGCTCACGTTTGAAAGATCACCACTCTATACCTATTCATCACCCTACAACTGTAAAAATGCAGTTCCACTTGACTGATGCTTGTAAAAGTAAAGTGGTGGATTGTGGGTTCCGTTTGATGTACACCCAGAGCCGTGGCTGTTTGTTAGAGGAAGAAGTCAACGCCAACTTCACTAAATTATACTTGGGTTTATTGTAA


Protein sequences

Name Description Sequence
disease resistance protein (TIR-NBS-LRR class), putative disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana].

MAASSEILPESWQVFINFRGADLRNGFISHLAGALTSAGITYYIDTEEVPSEDLTVLFKRIEESEIALSIFSSNYAESKWCLDELVKIMEQVKKGKLRIMPVFFNVKPEEVREQNGEFGLKLYGEGKSKRPNIPNWENALRSVPSKIGLNLANFRNEKELLDKIIDSIKKVLARITRASRVAESLNGISKDSEAKNVDTFSPNSSDFPSTSIDDDLSINSPQYQATIPPASREGERLNTISTVSSTGSIEHPPPNYGIEPRLKEMEEKLDFDSLETKTVGIVGMPGIGKTTLAETLYRKWEHKFERSMFFPDASKMANEHGMCWLQKRLLEELLKDTNLNIGYTTNEHEFCKDVLLLKKVFLVIDNVSSEEQIETLFGKWNWIKNGSKIVITSSDESMLKGFVKDTYVVPSLNSRDSLLWFTNHAFGLDDAQGNLVKLSKHFLNYAKGNPLALGAFGVELCGKDKADWEKRIKTLTLISNKMIQDVLRRRYDELTERQKDIFLDVACFFKSENESYVRHVVNSCDSESTKSWDEITDLKGKFLVNISGGRVEMHDILCTFAKELASQALTEDTRVHLRLWNYQDIMWFLNNELEMENVRGIFLDMSKVPEEMTFDGNIFSNMCNLRYLKIYSSVCHKEGEGIFKFDTVREIQLPLDKVRYLHWMKYPWEKLPSDFNPENLVDLELPYSSIKKVWEGVKDTPILKWANLSYSSKLTNLLGLSNAKNLERLNLEGCTSLLKLPQEMENMKSLVFLNMRRCTSLTCLQSIKVSSLKILILSDCSKLEEFEVISENLEELYLDGTAIKGLPPAAGDLTRLVVLNMEGCTELESLPKRLGKQKALQELVLSGCSKLESVPTDVKDMKHLRLLLLDGTRIRKIPKIKSLKCLCLSRNIAMVNLQDNLKDFSNLKCLVMKNCENLRYLPSLPKCLEYLNVYGCERLESVENPLVADRLTLFLDRSEELRSTFLFTNCHNLFQDAKDSISTYAKWKCHRLAVECYEQDIVSGAFFNTCYPGYIVPSWFDHQAVGSVLEPRLEPHWYNTMLSGIALCAVVSFHENQDPIIGSFSVKCTLQFENEDGSLRFDCDIGCLNEPGMIEADHVFIGYVTCSRLKDHHSIPIHHPTTVKMQFHLTDACKSKVVDCGFRLMYTQSRGCLLEEEVNANFTKLYLGLL

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
1-149 TIR
Toll/interleukin-1 receptor homology (TIR) domain

MAASSEILPESWQVFINFRGADLRNGFISHLAGALTSAGITYYIDTEEVPSEDLTVLFKRIEESEIALSIFSSNYAESKWCLDELVKIMEQVKKGKLRIMPVFFNVKPEEVREQNGEFGLKLYGEGKSKRPNIPNWENALRSVPSKIGL

ProfileScan: PS50104
IPR000157
10-146 TIR
Toll/interleukin-1 receptor homology (TIR) domain

ESWQVFINFRGADLRNGFISHLAGALTSAGITYYIDTEEVPSEDLTVLFKRIEESEIALSIFSSNYAESKWCLDELVKIMEQVKKGKLRIMPVFFNVKPEEVREQNGEFGLKLYGEGKSKRPNIPNWENALRSVPSK

Gene3D: G3DSA:3.40.50.10140
11-131 G3DSA:3.40.50.10140

SWQVFINFRGADLRNGFISHLAGALTSAGITYYIDTEEVPSEDLTVLFKRIEESEIALSIFSSNYAESKWCLDELVKIMEQVKKGKLRIMPVFFNVKPEEVREQNGEFGLKLYGEGKSKRP

HMMSmart: SM00255
IPR000157
11-146 TIR
Toll/interleukin-1 receptor homology (TIR) domain

SWQVFINFRGADLRNGFISHLAGALTSAGITYYIDTEEVPSEDLTVLFKRIEESEIALSIFSSNYAESKWCLDELVKIMEQVKKGKLRIMPVFFNVKPEEVREQNGEFGLKLYGEGKSKRPNIPNWENALRSVPSK

HMMPfam: PF01582
IPR000157
14-141 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFINFRGADLRNGFISHLAGALTSAGITYYIDTEEVPSEDLTVLFKRIEESEIALSIFSSNYAESKWCLDELVKIMEQVKKGKLRIMPVFFNVKPEEVREQNGEFGLKLYGEGKSKRPNIPNWENALR

HMMPanther: PTHR23155:SF68
21-980 PTHR23155:SF68,DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)

ADLRNGFISHLAGALTSAGITYYIDTEEVPSEDLTVLFKRIEESEIALSIFSSNYAESKWCLDELVKIMEQVKKGKLRIMPVFFNVKPEEVREQNGEFGLKLYGEGKSKRPNIPNWENALRSVPSKIGLNLANFRNEKELLDKIIDSIKKVLARITRASRVAESLNGISKDSEAKNVDTFSPNSSDFPSTSIDDDLSINSPQYQATIPPASREGERLNTISTVSSTGSIEHPPPNYGIEPRLKEMEEKLDFDSLETKTVGIVGMPGIGKTTLAETLYRKWEHKFERSMFFPDASKMANEHGMCWLQKRLLEELLKDTNLNIGYTTNEHEFCKDVLLLKKVFLVIDNVSSEEQIETLFGKWNWIKNGSKIVITSSDESMLKGFVKDTYVVPSLNSRDSLLWFTNHAFGLDDAQGNLVKLSKHFLNYAKGNPLALGAFGVELCGKDKADWEKRIKTLTLISNKMIQDVLRRRYDELTERQKDIFLDVACFFKSENESYVRHVVNSCDSESTKSWDEITDLKGKFLVNISGGRVEMHDILCTFAKELASQALTEDTRVHLRLWNYQDIMWFLNNELEMENVRGIFLDMSKVPEEMTFDGNIFSNMCNLRYLKIYSSVCHKEGEGIFKFDTVREIQLPLDKVRYLHWMKYPWEKLPSDFNPENLVDLELPYSSIKKVWEGVKDTPILKWANLSYSSKLTNLLGLSNAKNLERLNLEGCTSLLKLPQEMENMKSLVFLNMRRCTSLTCLQSIKVSSLKILILSDCSKLEEFEVISENLEELYLDGTAIKGLPPAAGDLTRLVVLNMEGCTELESLPKRLGKQKALQELVLSGCSKLESVPTDVKDMKHLRLLLLDGTRIRKIPKIKSLKCLCLSRNIAMVNLQDNLKDFSNLKCLVMKNCENLRYLPSLPKCLEYLNVYGCERLESVENPLVADRLTLFLDRSEELRSTFLFTNCHNLFQDAKDS

HMMPanther: PTHR23155
21-980 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

ADLRNGFISHLAGALTSAGITYYIDTEEVPSEDLTVLFKRIEESEIALSIFSSNYAESKWCLDELVKIMEQVKKGKLRIMPVFFNVKPEEVREQNGEFGLKLYGEGKSKRPNIPNWENALRSVPSKIGLNLANFRNEKELLDKIIDSIKKVLARITRASRVAESLNGISKDSEAKNVDTFSPNSSDFPSTSIDDDLSINSPQYQATIPPASREGERLNTISTVSSTGSIEHPPPNYGIEPRLKEMEEKLDFDSLETKTVGIVGMPGIGKTTLAETLYRKWEHKFERSMFFPDASKMANEHGMCWLQKRLLEELLKDTNLNIGYTTNEHEFCKDVLLLKKVFLVIDNVSSEEQIETLFGKWNWIKNGSKIVITSSDESMLKGFVKDTYVVPSLNSRDSLLWFTNHAFGLDDAQGNLVKLSKHFLNYAKGNPLALGAFGVELCGKDKADWEKRIKTLTLISNKMIQDVLRRRYDELTERQKDIFLDVACFFKSENESYVRHVVNSCDSESTKSWDEITDLKGKFLVNISGGRVEMHDILCTFAKELASQALTEDTRVHLRLWNYQDIMWFLNNELEMENVRGIFLDMSKVPEEMTFDGNIFSNMCNLRYLKIYSSVCHKEGEGIFKFDTVREIQLPLDKVRYLHWMKYPWEKLPSDFNPENLVDLELPYSSIKKVWEGVKDTPILKWANLSYSSKLTNLLGLSNAKNLERLNLEGCTSLLKLPQEMENMKSLVFLNMRRCTSLTCLQSIKVSSLKILILSDCSKLEEFEVISENLEELYLDGTAIKGLPPAAGDLTRLVVLNMEGCTELESLPKRLGKQKALQELVLSGCSKLESVPTDVKDMKHLRLLLLDGTRIRKIPKIKSLKCLCLSRNIAMVNLQDNLKDFSNLKCLVMKNCENLRYLPSLPKCLEYLNVYGCERLESVENPLVADRLTLFLDRSEELRSTFLFTNCHNLFQDAKDS

superfamily: SSF52540
238-494 SSF52540

NTISTVSSTGSIEHPPPNYGIEPRLKEMEEKLDFDSLETKTVGIVGMPGIGKTTLAETLYRKWEHKFERSMFFPDASKMANEHGMCWLQKRLLEELLKDTNLNIGYTTNEHEFCKDVLLLKKVFLVIDNVSSEEQIETLFGKWNWIKNGSKIVITSSDESMLKGFVKDTYVVPSLNSRDSLLWFTNHAFGLDDAQGNLVKLSKHFLNYAKGNPLALGAFGVELCGKDKADWEKRIKTLTLISNKMIQDVLRRRYDEL

Gene3D: G3DSA:3.40.50.300
256-404 G3DSA:3.40.50.300

YGIEPRLKEMEEKLDFDSLETKTVGIVGMPGIGKTTLAETLYRKWEHKFERSMFFPDASKMANEHGMCWLQKRLLEELLKDTNLNIGYTTNEHEFCKDVLLLKKVFLVIDNVSSEEQIETLFGKWNWIKNGSKIVITSSDESMLKGFVK

HMMPfam: PF00931
IPR002182
261-513 NB-ARC,NBS
NB-ARC

RLKEMEEKLDFDSLETKTVGIVGMPGIGKTTLAETLYRKWEHKFERSMFFPDASKMANEHGMCWLQKRLLEELLKDTNLNIGYTTNEHEFCKDVLLLKKVFLVIDNVSSEEQIETLFGKWNWIKNGSKIVITSSDESMLKGFVKDTYVVPSLNSRDSLLWFTNHAFGLDDAQGNLVKLSKHFLNYAKGNPLALGAFGVELCGKDKADWEKRIKTLTLISNKMIQDVLRRRYDELTERQKDIFLDVACFFKSEN

FPrintScan: PR00364
IPR000767
278-293 DISEASERSIST
Disease resistance protein

TVGIVGMPGIGKTTLA

FPrintScan: PR00364
IPR000767
354-368 DISEASERSIST
Disease resistance protein

VLLLKKVFLVIDNVS

FPrintScan: PR00364
IPR000767
446-460 DISEASERSIST
Disease resistance protein

AKGNPLALGAFGVEL

superfamily: SSF46785
481-590 SSF46785

KMIQDVLRRRYDELTERQKDIFLDVACFFKSENESYVRHVVNSCDSESTKSWDEITDLKGKFLVNISGGRVEMHDILCTFAKELASQALTEDTRVHLRLWNYQDIMWFLN

superfamily: SSF52058
552-943 SSF52058,LRR

EMHDILCTFAKELASQALTEDTRVHLRLWNYQDIMWFLNNELEMENVRGIFLDMSKVPEEMTFDGNIFSNMCNLRYLKIYSSVCHKEGEGIFKFDTVREIQLPLDKVRYLHWMKYPWEKLPSDFNPENLVDLELPYSSIKKVWEGVKDTPILKWANLSYSSKLTNLLGLSNAKNLERLNLEGCTSLLKLPQEMENMKSLVFLNMRRCTSLTCLQSIKVSSLKILILSDCSKLEEFEVISENLEELYLDGTAIKGLPPAAGDLTRLVVLNMEGCTELESLPKRLGKQKALQELVLSGCSKLESVPTDVKDMKHLRLLLLDGTRIRKIPKIKSLKCLCLSRNIAMVNLQDNLKDFSNLKCLVMKNCENLRYLPSLPKCLEYLNVYGCERLESVE

Gene3D: G3DSA:3.80.10.10
617-783 G3DSA:3.80.10.10

NIFSNMCNLRYLKIYSSVCHKEGEGIFKFDTVREIQLPLDKVRYLHWMKYPWEKLPSDFNPENLVDLELPYSSIKKVWEGVKDTPILKWANLSYSSKLTNLLGLSNAKNLERLNLEGCTSLLKLPQEMENMKSLVFLNMRRCTSLTCLQSIKVSSLKILILSDCSKL

HMMPfam: PF07725
IPR011713
679-698 LRR_3
Leucine-rich repeat 3

NLVDLELPYSSIKKVWEGVK

FPrintScan: PR00364
IPR000767
767-783 DISEASERSIST
Disease resistance protein

IKVSSLKILILSDCSKL

Gene3D: G3DSA:3.80.10.10
792-945 G3DSA:3.80.10.10

NLEELYLDGTAIKGLPPAAGDLTRLVVLNMEGCTELESLPKRLGKQKALQELVLSGCSKLESVPTDVKDMKHLRLLLLDGTRIRKIPKIKSLKCLCLSRNIAMVNLQDNLKDFSNLKCLVMKNCENLRYLPSLPKCLEYLNVYGCERLESVENP






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox