PRGDB00047062 (disease resistance protein (TIR-NBS-LRR class), putative)
| disease resistance protein (TIR-NBS-LRR class), putative | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 18422448 (NM_123818) |
| Gene Class | TNL |
| Domain Type | LRR, LRR, NBS, LRR, LRR, TIR, Others |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGGATTCTTCATGTTTCTTGGTTTATAGAATATTCAGATTTCGTAAAAGAAATAAGAATATTTCTTCTTCTCTATCTTCTTCATCTCCCCCTTCTTCTTTGTCTCAAAATTGGTTGCACCCTGTTTTCTTGAGCTTCCGTGGGGAAGATGTCCGCAAAGGCTTGCTCAGTCACATTCAGAAGGAGTTTCAAAGAAACGGAATCACACCGTTCATTGATAATGAGATGAAGAGAGGAGGATCCATTGGTCCTGAGCTCTTACAGGCTATTAGAGGATCTAAGATCGCGATCATCTTGCTTTCGAGGAACTATGGTTCTTCGAAGTGGTGTCTTGATGAATTGGTGGAGATTATGAAATGCAGAGAAGAGTTGGGTCAAACAGTGATGACCGTTTTTTATGATGTGGATCCATCTGATGTGAGGAAGCAGAAGGGAGATTTTGGGAAGGTTTTTAAAAAAACTTGTGTTGGAAGACCAGAGGAGATGGTACAGAGATGGAAGCAAGCTTTGACCAGCGCTGCAAATATACTCGGGGAGGATTCTCGCAACTGGGAAAACGAAGCGGATATGATCATTAAAATCTCAAAAGATGTCTCCGATGTGTTGAGTTTTACGCCATCAAAGGATTTTGATGAGTTTGTTGGCATTGAAGCTCATACGACGGAGATAACTTCGTTGTTACAACTTGATCTGGAAGAAGTGAGAATGATAGGGATTTGGGGTCCTGCTGGTATTGGCAAGACGACCATCTCCAGAGTTCTATATAACAAACTCTTTCATCAGTTCCAACTGGGCGCAATCATTGACAACATCAAAGTACGTTATCCAAGACCTTGTCACGATGAGTACAGTGCAAAGCTGCAGTTACAGAAAGAATTGTTGTCTCAGATGATTAACCAGAAAGATATGGTGGTTCCTCATTTAGGTGTTGCCCAAGAGAGGTTGAAGGACAAGAAAGTTCTTCTAGTTCTTGATGACGTCGATGGGTTAGTACAACTTGATGCCATGGCGAAAGATGTACAATGGTTTGGCCTTGGAAGTCGCATTATTGTCGTAACTCAAGATCTAAAACTTTTAAAAGCTCATGGGATCAAGTATATTTACAAAGTTGATTTTCCAACTTCTGATGAGGCTCTTGAAATCTTCTGCATGTATGCTTTTGGTGAGAAGTCCCCTAAAGTTGGTTTTGAGCAGATTGCTCGGACGGTTACAACACTTGCTGGTAAACTCCCGTTAGGACTAAGGGTTATGGGATCATATTTACGGCGAATGTCGAAGCAGGAGTGGGCGAAATCAATACCAAGGCTAAGGACCAGCCTTGACGATGATATTGAGAGCGTTTTGAAGTTCAGTTACAACTCCTTAGCTGAACAAGAGAAAGATTTATTTCTTCACATAACCTGTTTTTTCAGAAGGGAAAGGATTGAGACATTGGAAGTATTTCTTGCAAAGAAGTCTGTAGATATGAGGCAAGGGCTCCAAATCTTGGCAGATAAATCTCTCTTATCTTTGAACTTGGGAAATATAGAGATGCATAATTTGCTAGTACAACTAGGCCTAGACATTGTTCGTAAGCAATCTATTCATAAGCCTGGGAAACGTCAGTTCTTGGTTGATACTGAAGATATTTGTGAAGTACTCACTGATGATACGGGTACCAGAACTCTTATAGGCATAGATCTTGAGTTATCTGGTGTAATCGAGGGCGTAATAAATATTAGTGAAAGAGCCTTTGAAAGAATGTGCAATCTCCAGTTCTTAAGATTCCACCATCCATATGGTGATCGTTGTCACGACATATTGTACTTACCGCAAGGTTTGAGCCATATATCTCGAAAACTTAGACTACTTCATTGGGAACGTTATCCACTGACATGTTTGCCTCCCAAGTTTAATCCGGAGTTCCTTGTCAAAATAAACATGCGAGACAGCATGCTCGAGAAGCTGTGGGACGGAAATGAACCCATTAGAAACCTCAAATGGATGGATTTGAGTTTTTGTGTAAACCTGAAGGAGCTTCCTGATTTCTCTACTGCCACTAATCTCCAAGAATTGAGACTCATAAATTGTTTAAGCTTGGTGGAGCTTCCCTCTTCCATTGGGAATGCCACTAATTTACTGGAATTGGATCTTATTGATTGCTCAAGTCTGGTGAAACTCCCCTCCTCTATTGGGAATCTCACAAATCTAAAAAAGTTGTTTCTCAATAGATGTTCGAGTTTGGTGAAACTCCCTTCCTCTTTTGGGAATGTCACTAGTCTCAAGGAGTTAAATCTCAGTGGTTGTTCAAGTCTTCTGGAGATCCCCTCTTCCATCGGGAATATTGTTAACCTCAAGAAAGTATATGCTGATGGATGTTCAAGTCTGGTGCAACTCCCTTCCTCTATTGGAAATAACACTAATCTCAAGGAATTGCATCTACTGAATTGCTCGAGTTTGATGGAATGCCCTTCTTCTATGTTAAATTTAACTCGTCTCGAAGATTTGAATCTCAGTGGATGCTTAAGTCTGGTGAAGCTCCCCTCTATTGGGAATGTTATTAATCTCCAATCATTGTATCTCAGTGATTGCTCAAGTCTAATGGAACTCCCCTTCACTATTGAGAATGCCACTAATCTCGATACATTGTATCTTGATGGATGCTCGAATCTACTGGAGCTTCCCTCATCTATTTGGAATATCACTAATCTCCAATCATTGTATCTAAACGGATGCTCAAGTCTAAAGGAGCTCCCTTCCTTGGTTGAGAATGCCATTAATCTTCAAAGTTTGTCTCTTATGAAATGTTCAAGTTTGGTAGAGCTCCCTTCCTCCATCTGGAGAATCAGTAATCTCTCATACTTAGATGTCAGTAACTGCTCTAGTTTGCTAGAGCTCAATCTTGTCTCGCACCCCGTGGTTCCAGATTCCCTAATCCTAGATGCAGGAGATTGTGAGTCTCTGGTGCAGAGACTAGATTGCTTCTTTCAAAATCCAAAGATTGTTCTCAACTTCGCTAACTGCTTCAAACTGAATCAAGAAGCAAGAGATCTCATCATCCAGACATCGGCTTGTAGAAATGCGATATTACCAGGTGAAAAAGTGCCTGCATACTTCACGTACCGCGCTACTGGTGATTCTTTAACAGTGAAGTTGAACCAGAAGTATCTTCTTCAATCTTTGAGATTTAAAGCTTGCCTTTTGCTAGTTGAGGGTCAAAACAAATGGCCAAATTGGGGGATGAATCTAGTAACTTCTCGAGAACCAGATGGACACATTGTTCTGTACACACCAAGCAGCCATCTTCAAGGTCCACTTTTAATGGAGAATCTGTATACATTCGAATTTGAACTAGTGGTGACTTCCAGTGAGTTCGTTTTGGAGTTCAGAGCTGATCGTTACAAGTGTGCGTTGGGTCGATTTGACAAGTTTGGTGTGCATGTTGTGTGGTGTCACTTAGACCAGTACGAGTCAAAATCCCCGAGTTGCAAGCCCTTTTGGAGGGATTTTCCTATAGTCATTAGCAATGGTCAGAACATTCTTGATGCTATACTCAAAACTCCAATGCCAAGCATCAATCAGTAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein (TIR-NBS-LRR class), putative | disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana]. | MDSSCFLVYRIFRFRKRNKNISSSLSSSSPPSSLSQNWLHPVFLSFRGEDVRKGLLSHIQKEFQRNGITPFIDNEMKRGGSIGPELLQAIRGSKIAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKVFKKTCVGRPEEMVQRWKQALTSAANILGEDSRNWENEADMIIKISKDVSDVLSFTPSKDFDEFVGIEAHTTEITSLLQLDLEEVRMIGIWGPAGIGKTTISRVLYNKLFHQFQLGAIIDNIKVRYPRPCHDEYSAKLQLQKELLSQMINQKDMVVPHLGVAQERLKDKKVLLVLDDVDGLVQLDAMAKDVQWFGLGSRIIVVTQDLKLLKAHGIKYIYKVDFPTSDEALEIFCMYAFGEKSPKVGFEQIARTVTTLAGKLPLGLRVMGSYLRRMSKQEWAKSIPRLRTSLDDDIESVLKFSYNSLAEQEKDLFLHITCFFRRERIETLEVFLAKKSVDMRQGLQILADKSLLSLNLGNIEMHNLLVQLGLDIVRKQSIHKPGKRQFLVDTEDICEVLTDDTGTRTLIGIDLELSGVIEGVINISERAFERMCNLQFLRFHHPYGDRCHDILYLPQGLSHISRKLRLLHWERYPLTCLPPKFNPEFLVKINMRDSMLEKLWDGNEPIRNLKWMDLSFCVNLKELPDFSTATNLQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPSIGNVINLQSLYLSDCSSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQSLSLMKCSSLVELPSSIWRISNLSYLDVSNCSSLLELNLVSHPVVPDSLILDAGDCESLVQRLDCFFQNPKIVLNFANCFKLNQEARDLIIQTSACRNAILPGEKVPAYFTYRATGDSLTVKLNQKYLLQSLRFKACLLLVEGQNKWPNWGMNLVTSREPDGHIVLYTPSSHLQGPLLMENLYTFEFELVVTSSEFVLEFRADRYKCALGRFDKFGVHVVWCHLDQYESKSPSCKPFWRDFPIVISNGQNILDAILKTPMPSINQ |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
28-179 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
SSPPSSLSQNWLHPVFLSFRGEDVRKGLLSHIQKEFQRNGITPFIDNEMKRGGSIGPELLQAIRGSKIAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKVFKKTCVGRPEEMVQRWKQALTSAANILGE |
| Gene3D: G3DSA:3.40.50.10140 | 36-172 | G3DSA:3.40.50.10140 | QNWLHPVFLSFRGEDVRKGLLSHIQKEFQRNGITPFIDNEMKRGGSIGPELLQAIRGSKIAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKVFKKTCVGRPEEMVQRWKQALTS |
| ProfileScan: PS50104 IPR000157
|
38-176 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
WLHPVFLSFRGEDVRKGLLSHIQKEFQRNGITPFIDNEMKRGGSIGPELLQAIRGSKIAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKVFKKTCVGRPEEMVQRWKQALTSAANI |
| HMMSmart: SM00255 IPR000157
|
39-176 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
LHPVFLSFRGEDVRKGLLSHIQKEFQRNGITPFIDNEMKRGGSIGPELLQAIRGSKIAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKVFKKTCVGRPEEMVQRWKQALTSAANI |
| HMMPfam: PF01582 IPR000157
|
42-171 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFLSFRGEDVRKGLLSHIQKEFQRNGITPFIDNEMKRGGSIGPELLQAIRGSKIAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKVFKKTCVGRPEEMVQRWKQALT |
| HMMPanther: PTHR23155 | 50-997 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | DVRKGLLSHIQKEFQRNGITPFIDNEMKRGGSIGPELLQAIRGSKIAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKVFKKTCVGRPEEMVQRWKQALTSAANILGEDSRNWENEADMIIKISKDVSDVLSFTPSKDFDEFVGIEAHTTEITSLLQLDLEEVRMIGIWGPAGIGKTTISRVLYNKLFHQFQLGAIIDNIKVRYPRPCHDEYSAKLQLQKELLSQMINQKDMVVPHLGVAQERLKDKKVLLVLDDVDGLVQLDAMAKDVQWFGLGSRIIVVTQDLKLLKAHGIKYIYKVDFPTSDEALEIFCMYAFGEKSPKVGFEQIARTVTTLAGKLPLGLRVMGSYLRRMSKQEWAKSIPRLRTSLDDDIESVLKFSYNSLAEQEKDLFLHITCFFRRERIETLEVFLAKKSVDMRQGLQILADKSLLSLNLGNIEMHNLLVQLGLDIVRKQSIHKPGKRQFLVDTEDICEVLTDDTGTRTLIGIDLELSGVIEGVINISERAFERMCNLQFLRFHHPYGDRCHDILYLPQGLSHISRKLRLLHWERYPLTCLPPKFNPEFLVKINMRDSMLEKLWDGNEPIRNLKWMDLSFCVNLKELPDFSTATNLQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPSIGNVINLQSLYLSDCSSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQSLSLMKCSSLVELPSSIWRISNLSYLDVSNCSSLLELNLVSHPVVPDSLILDAGDCESLVQRLDCFFQNPKIVLN |
| HMMPanther: PTHR23155:SF301 | 50-997 | PTHR23155:SF301 | DVRKGLLSHIQKEFQRNGITPFIDNEMKRGGSIGPELLQAIRGSKIAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKVFKKTCVGRPEEMVQRWKQALTSAANILGEDSRNWENEADMIIKISKDVSDVLSFTPSKDFDEFVGIEAHTTEITSLLQLDLEEVRMIGIWGPAGIGKTTISRVLYNKLFHQFQLGAIIDNIKVRYPRPCHDEYSAKLQLQKELLSQMINQKDMVVPHLGVAQERLKDKKVLLVLDDVDGLVQLDAMAKDVQWFGLGSRIIVVTQDLKLLKAHGIKYIYKVDFPTSDEALEIFCMYAFGEKSPKVGFEQIARTVTTLAGKLPLGLRVMGSYLRRMSKQEWAKSIPRLRTSLDDDIESVLKFSYNSLAEQEKDLFLHITCFFRRERIETLEVFLAKKSVDMRQGLQILADKSLLSLNLGNIEMHNLLVQLGLDIVRKQSIHKPGKRQFLVDTEDICEVLTDDTGTRTLIGIDLELSGVIEGVINISERAFERMCNLQFLRFHHPYGDRCHDILYLPQGLSHISRKLRLLHWERYPLTCLPPKFNPEFLVKINMRDSMLEKLWDGNEPIRNLKWMDLSFCVNLKELPDFSTATNLQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPSIGNVINLQSLYLSDCSSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQSLSLMKCSSLVELPSSIWRISNLSYLDVSNCSSLLELNLVSHPVVPDSLILDAGDCESLVQRLDCFFQNPKIVLN |
| superfamily: SSF52540 | 93-464 | SSF52540 | SKIAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKVFKKTCVGRPEEMVQRWKQALTSAANILGEDSRNWENEADMIIKISKDVSDVLSFTPSKDFDEFVGIEAHTTEITSLLQLDLEEVRMIGIWGPAGIGKTTISRVLYNKLFHQFQLGAIIDNIKVRYPRPCHDEYSAKLQLQKELLSQMINQKDMVVPHLGVAQERLKDKKVLLVLDDVDGLVQLDAMAKDVQWFGLGSRIIVVTQDLKLLKAHGIKYIYKVDFPTSDEALEIFCMYAFGEKSPKVGFEQIARTVTTLAGKLPLGLRVMGSYLRRMSKQEWAKSIPRLRTSLDDDIESVLKFSYNSLAEQEKDLFL |
| Gene3D: G3DSA:3.40.50.300 | 205-247 | G3DSA:3.40.50.300 | TPSKDFDEFVGIEAHTTEITSLLQLDLEEVRMIGIWGPAGIGK |
| HMMPfam: PF00931 IPR002182
|
217-478 | NB-ARC,NBS NB-ARC
|
EAHTTEITSLLQLDLEEVRMIGIWGPAGIGKTTISRVLYNKLFHQFQLGAIIDNIKVRYPRPCHDEYSAKLQLQKELLSQMINQKDMVVPHLGVAQERLKDKKVLLVLDDVDGLVQLDAMAKDVQWFGLGSRIIVVTQDLKLLKAHGIKYIYKVDFPTSDEALEIFCMYAFGEKSPKVGFEQIARTVTTLAGKLPLGLRVMGSYLRRMSKQEWAKSIPRLRTSLDDDIESVLKFSYNSLAEQEKDLFLHITCFFRRERIETL |
| FPrintScan: PR00364 IPR000767
|
236-251 | DISEASERSIST Disease resistance protein
|
MIGIWGPAGIGKTTIS |
| Gene3D: G3DSA:3.40.50.300 | 248-411 | G3DSA:3.40.50.300 | TTISRVLYNKLFHQFQLGAIIDNIKVRYPRPCHDEYSAKLQLQKELLSQMINQKDMVVPHLGVAQERLKDKKVLLVLDDVDGLVQLDAMAKDVQWFGLGSRIIVVTQDLKLLKAHGIKYIYKVDFPTSDEALEIFCMYAFGEKSPKVGFEQIARTVTTLAGKLP |
| FPrintScan: PR00364 IPR000767
|
314-328 | DISEASERSIST Disease resistance protein
|
RLKDKKVLLVLDDVD |
| FPrintScan: PR00364 IPR000767
|
407-421 | DISEASERSIST Disease resistance protein
|
AGKLPLGLRVMGSYL |
| superfamily: SSF46785 | 442-548 | SSF46785 | DDIESVLKFSYNSLAEQEKDLFLHITCFFRRERIETLEVFLAKKSVDMRQGLQILADKSLLSLNLGNIEMHNLLVQLGLDIVRKQSIHKPGKRQFLVDTEDICEVLT |
| superfamily: SSF52058 | 561-976 | SSF52058,LRR | LELSGVIEGVINISERAFERMCNLQFLRFHHPYGDRCHDILYLPQGLSHISRKLRLLHWERYPLTCLPPKFNPEFLVKINMRDSMLEKLWDGNEPIRNLKWMDLSFCVNLKELPDFSTATNLQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPSIGNVINLQSLYLSDCSSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQSLSLMKCSSLVELPSSIWRISNLSYLDVSNCSSLLELNLVSHPVVPDSLILDAG |
| Gene3D: G3DSA:3.80.10.10 | 609-825 | G3DSA:3.80.10.10 | HISRKLRLLHWERYPLTCLPPKFNPEFLVKINMRDSMLEKLWDGNEPIRNLKWMDLSFCVNLKELPDFSTATNLQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCSSLMECPSSMLNLTR |
| HMMPfam: PF07725 IPR011713
|
635-653 | LRR_3 Leucine-rich repeat 3
|
FLVKINMRDSMLEKLWDGN |
| HMMPfam: PF00560 IPR001611
|
658-677 | LRR_1 Leucine-rich repeat
|
NLKWMDLSFCVNLKELPDFS |
| HMMPfam: PF13855 | 728-786 | LRR_8,Leucine rich repeat | TNLKKLFLNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGC |
| FPrintScan: PR00364 IPR000767
|
749-765 | DISEASERSIST Disease resistance protein
|
GNVTSLKELNLSGCSSL |
| HMMPfam: PF00560 IPR001611
|
825-845 | LRR_1 Leucine-rich repeat
|
RLEDLNLSGCLSLVKLPSIGN |
| Gene3D: G3DSA:3.80.10.10 | 826-966 | G3DSA:3.80.10.10 | LEDLNLSGCLSLVKLPSIGNVINLQSLYLSDCSSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQSLSLMKCSSLVELPSSIWRISNLSYLDVSNCSSLLELNLVSHPV |
| HMMPfam: PF00560 IPR001611
|
896-913 | LRR_1 Leucine-rich repeat
|
NLQSLYLNGCSSLKELPS |
List of Contributions
There has not been any contribution yet.
