PRGDB00047082 (disease resistance protein (TIR-NBS-LRR class), putative)

From PRG Wiki
Jump to: navigation, search
disease resistance protein (TIR-NBS-LRR class), putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 145336834 (NM_104527)
Gene Class TNL
Domain Type LRR, LRR, NBS, LRR, TIR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana disease resistance protein (TIR-NBS-LRR class), putative (AT1G56510) mRNA, complete cds.

DNA Sequence

ATGGCTTCTTCTTCTTCCTCACCTCGCAACTGGAGATACAATGTCTTCACGAGCTTCCATGGACCAGACGTCCGTATTAAATTTCTCAGTCATTTACGTCAACAGTTTGTCTACAATGGAATTACAATGTTCGATGACAACGGGATCGAAAGAAGCCAAATTATCGCTCCAGCTCTCAAAAAAGCCATTGGAGAATCAAGGGTCGCGATTGTATTGCTCTCGAAGAACTATGCTTCTTCCAGTTGGTGTTTGGATGAGCTATTGGAGATTTTAAAGTGCAAAGAATATATAGGACAAATAGTGATGACTGTCTTCTACGAAGTTGATCCTTCTCACGTGCGCAAACAAACCGGAGATTTTGGGATTGCTTTCAAAGAAACTTGTGCTCATAAAACAGAGGAGGAGAGGAGCAAATGGAGCCAAGCTTTGACCTATGTGGGCAACATAGCCGGAGAAGACTTCATACACTGGAAAGATGAAGCAAAAATGATAGAGAAGATAGCAAGAGATGTTTCGACTAAAATAAATGTCACACCGTGTCGGGATTTTGATGACATGGTTGGACTAGAAAGACATTTGAAGGAAATGGTGTCTTTGCTAGATTTAGACAAAGAAGGAGTTAAGATGGTTGGAATCTCTGGTCCTGCAGGCATTGGTAAGAGTACCATTGCCAAAGCTTTACATAGTCGACACTCTAGTACGTTTCAACATAATTGTTTTGTGGACAATCTTTGGGAAAACTATAAGATTTGTACTGGTGAGCATGGTGTGAAGTTGCGCTTACATGAGCAATTTGTTTCAAAAATTTTGAAACAAAATGGTTTGGAACTAACTCATTTAAGTGTGATAAAAGATAGGCTACAAGACAAGAAGGTTCTTATCATTCTTGATGATGTGGAGAGTTTAGCTCAACTTGAGACTTTGGCTGATATGACGTGGTTTGGTCCTGGAAGTAGGGTCATAGTAACGACTGAAAACAAAGAGATTTTGCAGCAACATGGTATCGGTGATATATACCAAGTTGGATATCCATCAGAAAGCGAAGCACTAACGATCTTCTGTCTATCTGCTTTTAAACAAGCCTCTCCACCTGATGGGTTTATGGATCTTGCGGATGAAGTTGTAAGAATTTGTGATAAGCTTCCATTGGCTCTGTGTGTTTTAGGGTCGTCATTGCTGCGAAAGAGCCAGACTGACTGGGAGGATGAACTGCCAAGGTTGAGAAACTGTCTTGACGGAATTGAGAGTGTATTGAAAGTGGGCTTTGAGAGTTTAAATGAGAAAGACCAAGCTCTATTTCTCTACATTACAGTCTTCTTCAATTATGAATGTGCTGATCATGTGACGTTGATGCTAGCGAAATCTAACTTGAATGTTAGACTTGGGTTGAAAAACCTAGCTAATAGGTATCTCATACATATAGATCACGACCAAAAAAAAAGAGTGGTAGTGCATCGTTTGCTACGAGTAATGGCTATACAAGTTTGTACCAAACAAAAGCCTTGGAAAAGCCAGATTCTAGTAGATGCCGAAAAGATAGCTTATGTTCTTGAAGAAGCAACGGGTAATCGATCTATTAAAGGTGTATCATTTGACACAGCGGAGATCGACGAATTAATGATAAGCCCAAAGGCTTTTGAAAAAATGTGCAATCTTTTGTTCCTGAAAGTCTACGATGCGGGGTGGCATACCGGAAAAAGAAAATTGGACATTCCAGAGGATATTAAGTTTCCACGTACCATACGGTTATTTCATTGGGATGCCTACTCAGGAAAGAGGCTTCCTAGTAGCTTTTTTGCAGAAAATCTTGTTGAAGTCAATATGCAAGATAGCGAGCTCCAGAAGCTATGGGAAGGAACTCAGTGCCTTGCCAATCTCAAGAAGATAGATCTTTCAAGGTCATCTTGTTTGACGGAACTTCCAGATCTTTCAAATGCTACAAATCTGGAGGACTTGTATGTGGGTTCTTGCACTGCTTTGGTAGAGCTTCCATCTTCGATTGGGAATCTTCATAAACTAGCTCATATAATGATGTATTCTTGCGAAAGTCTAGAAGTCATTCCATCTCTCATCAACTTGACATCTCTTACCTTCCTCAACATGAATAAATGCTCAAGATTGAGAAGATTCCCAGATATCCCCACCAGCATAGAGGACGTCCAAGTAACAGGTACAACTCTAGAGGAATTGCCTGCATCACTTACGCATTGCTCTGGTCTTCAGACTATTAAGATAAGTGGAAGTGTAAATCTCAAGATCTTCTACACAGAGCTCCCCGTGAGTGTAAGCCATATAAATATAAGCAACAGTGGTATTGAGTGGATTACAGAAGATTGCATCAAAGGTCTTCATAATCTACACGACCTTTGTCTATCAGGCTGCAAAAGACTCGTGTCACTGCCAGAGCTTCCTCGTTCGCTGAAAATTCTACAAGCAGACGATTGTGATTCACTAGAGAGTTTAAATGGCCATTTAAACACTCCAAATGCAGAGCTATATTTCGCTAACTGCTTCAAATTGGATGCAGAAGCACGACGAGCGATAATTCAGCAATCGTTTGTTAGCGGGTGGGCTCTCTTACCAGGATTAGAAGTACCTCCAGAGTTCGGCCACCGAGCCAGAGGAAATTCCTTAATAATTCCTTATTCTGCTTCCAACAGATTTAAGGTTTGTGTCGTGATGTCACTTAACCATCATCAACCCTTCGAATTAGTTCCTAGAAACCTATTATATCGTTGGACAGTCATAGGCGACTCAGTGAGCTCTGATGAAAAGACGTTTCACCTTTCACATATGTTCAACGCCGACTCAGTGAACTCCAAGTTACAAAAGCCACATCTGTTCATATTTCACTCTTGCTTGCCATTCATATTTCACTCGTGCTTGCCATTCATATTTGACATTAGCAATATAATGCTCGAATTCAGCAGCGAATACAAAGATTTCGACATCCTTGAATGTGGTGTTCAGATCTTGACGGATGAAACAGATGAAAGAAACATTTGGGGTTCTCTAGTATTCTGA


Protein sequences

Name Description Sequence
disease resistance protein (TIR-NBS-LRR class), putative disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana].

MASSSSSPRNWRYNVFTSFHGPDVRIKFLSHLRQQFVYNGITMFDDNGIERSQIIAPALKKAIGESRVAIVLLSKNYASSSWCLDELLEILKCKEYIGQIVMTVFYEVDPSHVRKQTGDFGIAFKETCAHKTEEERSKWSQALTYVGNIAGEDFIHWKDEAKMIEKIARDVSTKINVTPCRDFDDMVGLERHLKEMVSLLDLDKEGVKMVGISGPAGIGKSTIAKALHSRHSSTFQHNCFVDNLWENYKICTGEHGVKLRLHEQFVSKILKQNGLELTHLSVIKDRLQDKKVLIILDDVESLAQLETLADMTWFGPGSRVIVTTENKEILQQHGIGDIYQVGYPSESEALTIFCLSAFKQASPPDGFMDLADEVVRICDKLPLALCVLGSSLLRKSQTDWEDELPRLRNCLDGIESVLKVGFESLNEKDQALFLYITVFFNYECADHVTLMLAKSNLNVRLGLKNLANRYLIHIDHDQKKRVVVHRLLRVMAIQVCTKQKPWKSQILVDAEKIAYVLEEATGNRSIKGVSFDTAEIDELMISPKAFEKMCNLLFLKVYDAGWHTGKRKLDIPEDIKFPRTIRLFHWDAYSGKRLPSSFFAENLVEVNMQDSELQKLWEGTQCLANLKKIDLSRSSCLTELPDLSNATNLEDLYVGSCTALVELPSSIGNLHKLAHIMMYSCESLEVIPSLINLTSLTFLNMNKCSRLRRFPDIPTSIEDVQVTGTTLEELPASLTHCSGLQTIKISGSVNLKIFYTELPVSVSHINISNSGIEWITEDCIKGLHNLHDLCLSGCKRLVSLPELPRSLKILQADDCDSLESLNGHLNTPNAELYFANCFKLDAEARRAIIQQSFVSGWALLPGLEVPPEFGHRARGNSLIIPYSASNRFKVCVVMSLNHHQPFELVPRNLLYRWTVIGDSVSSDEKTFHLSHMFNADSVNSKLQKPHLFIFHSCLPFIFHSCLPFIFDISNIMLEFSSEYKDFDILECGVQILTDETDERNIWGSLVF

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
1-152 TIR
Toll/interleukin-1 receptor homology (TIR) domain

MASSSSSPRNWRYNVFTSFHGPDVRIKFLSHLRQQFVYNGITMFDDNGIERSQIIAPALKKAIGESRVAIVLLSKNYASSSWCLDELLEILKCKEYIGQIVMTVFYEVDPSHVRKQTGDFGIAFKETCAHKTEEERSKWSQALTYVGNIAGE

Gene3D: G3DSA:3.40.50.10140
9-144 G3DSA:3.40.50.10140

RNWRYNVFTSFHGPDVRIKFLSHLRQQFVYNGITMFDDNGIERSQIIAPALKKAIGESRVAIVLLSKNYASSSWCLDELLEILKCKEYIGQIVMTVFYEVDPSHVRKQTGDFGIAFKETCAHKTEEERSKWSQALT

ProfileScan: PS50104
IPR000157
11-149 TIR
Toll/interleukin-1 receptor homology (TIR) domain

WRYNVFTSFHGPDVRIKFLSHLRQQFVYNGITMFDDNGIERSQIIAPALKKAIGESRVAIVLLSKNYASSSWCLDELLEILKCKEYIGQIVMTVFYEVDPSHVRKQTGDFGIAFKETCAHKTEEERSKWSQALTYVGNI

HMMSmart: SM00255
IPR000157
12-149 TIR
Toll/interleukin-1 receptor homology (TIR) domain

RYNVFTSFHGPDVRIKFLSHLRQQFVYNGITMFDDNGIERSQIIAPALKKAIGESRVAIVLLSKNYASSSWCLDELLEILKCKEYIGQIVMTVFYEVDPSHVRKQTGDFGIAFKETCAHKTEEERSKWSQALTYVGNI

HMMPfam: PF01582
IPR000157
15-143 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFTSFHGPDVRIKFLSHLRQQFVYNGITMFDDNGIERSQIIAPALKKAIGESRVAIVLLSKNYASSSWCLDELLEILKCKEYIGQIVMTVFYEVDPSHVRKQTGDFGIAFKETCAHKTEEERSKWSQAL

HMMPanther: PTHR11017:SF20
35-1001 PTHR11017:SF20,SUBFAMILY NOT NAMED

QFVYNGITMFDDNGIERSQIIAPALKKAIGESRVAIVLLSKNYASSSWCLDELLEILKCKEYIGQIVMTVFYEVDPSHVRKQTGDFGIAFKETCAHKTEEERSKWSQALTYVGNIAGEDFIHWKDEAKMIEKIARDVSTKINVTPCRDFDDMVGLERHLKEMVSLLDLDKEGVKMVGISGPAGIGKSTIAKALHSRHSSTFQHNCFVDNLWENYKICTGEHGVKLRLHEQFVSKILKQNGLELTHLSVIKDRLQDKKVLIILDDVESLAQLETLADMTWFGPGSRVIVTTENKEILQQHGIGDIYQVGYPSESEALTIFCLSAFKQASPPDGFMDLADEVVRICDKLPLALCVLGSSLLRKSQTDWEDELPRLRNCLDGIESVLKVGFESLNEKDQALFLYITVFFNYECADHVTLMLAKSNLNVRLGLKNLANRYLIHIDHDQKKRVVVHRLLRVMAIQVCTKQKPWKSQILVDAEKIAYVLEEATGNRSIKGVSFDTAEIDELMISPKAFEKMCNLLFLKVYDAGWHTGKRKLDIPEDIKFPRTIRLFHWDAYSGKRLPSSFFAENLVEVNMQDSELQKLWEGTQCLANLKKIDLSRSSCLTELPDLSNATNLEDLYVGSCTALVELPSSIGNLHKLAHIMMYSCESLEVIPSLINLTSLTFLNMNKCSRLRRFPDIPTSIEDVQVTGTTLEELPASLTHCSGLQTIKISGSVNLKIFYTELPVSVSHINISNSGIEWITEDCIKGLHNLHDLCLSGCKRLVSLPELPRSLKILQADDCDSLESLNGHLNTPNAELYFANCFKLDAEARRAIIQQSFVSGWALLPGLEVPPEFGHRARGNSLIIPYSASNRFKVCVVMSLNHHQPFELVPRNLLYRWTVIGDSVSSDEKTFHLSHMFNADSVNSKLQKPHLFIFHSCLPFIFHSCLPFIFDISNIMLEFSSEYKDFDILECGVQILTDETDERNI

HMMPanther: PTHR11017
35-1001 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

QFVYNGITMFDDNGIERSQIIAPALKKAIGESRVAIVLLSKNYASSSWCLDELLEILKCKEYIGQIVMTVFYEVDPSHVRKQTGDFGIAFKETCAHKTEEERSKWSQALTYVGNIAGEDFIHWKDEAKMIEKIARDVSTKINVTPCRDFDDMVGLERHLKEMVSLLDLDKEGVKMVGISGPAGIGKSTIAKALHSRHSSTFQHNCFVDNLWENYKICTGEHGVKLRLHEQFVSKILKQNGLELTHLSVIKDRLQDKKVLIILDDVESLAQLETLADMTWFGPGSRVIVTTENKEILQQHGIGDIYQVGYPSESEALTIFCLSAFKQASPPDGFMDLADEVVRICDKLPLALCVLGSSLLRKSQTDWEDELPRLRNCLDGIESVLKVGFESLNEKDQALFLYITVFFNYECADHVTLMLAKSNLNVRLGLKNLANRYLIHIDHDQKKRVVVHRLLRVMAIQVCTKQKPWKSQILVDAEKIAYVLEEATGNRSIKGVSFDTAEIDELMISPKAFEKMCNLLFLKVYDAGWHTGKRKLDIPEDIKFPRTIRLFHWDAYSGKRLPSSFFAENLVEVNMQDSELQKLWEGTQCLANLKKIDLSRSSCLTELPDLSNATNLEDLYVGSCTALVELPSSIGNLHKLAHIMMYSCESLEVIPSLINLTSLTFLNMNKCSRLRRFPDIPTSIEDVQVTGTTLEELPASLTHCSGLQTIKISGSVNLKIFYTELPVSVSHINISNSGIEWITEDCIKGLHNLHDLCLSGCKRLVSLPELPRSLKILQADDCDSLESLNGHLNTPNAELYFANCFKLDAEARRAIIQQSFVSGWALLPGLEVPPEFGHRARGNSLIIPYSASNRFKVCVVMSLNHHQPFELVPRNLLYRWTVIGDSVSSDEKTFHLSHMFNADSVNSKLQKPHLFIFHSCLPFIFHSCLPFIFDISNIMLEFSSEYKDFDILECGVQILTDETDERNI

superfamily: SSF52540
66-413 SSF52540

SRVAIVLLSKNYASSSWCLDELLEILKCKEYIGQIVMTVFYEVDPSHVRKQTGDFGIAFKETCAHKTEEERSKWSQALTYVGNIAGEDFIHWKDEAKMIEKIARDVSTKINVTPCRDFDDMVGLERHLKEMVSLLDLDKEGVKMVGISGPAGIGKSTIAKALHSRHSSTFQHNCFVDNLWENYKICTGEHGVKLRLHEQFVSKILKQNGLELTHLSVIKDRLQDKKVLIILDDVESLAQLETLADMTWFGPGSRVIVTTENKEILQQHGIGDIYQVGYPSESEALTIFCLSAFKQASPPDGFMDLADEVVRICDKLPLALCVLGSSLLRKSQTDWEDELPRLRNCLDG

Gene3D: G3DSA:3.40.50.300
182-218 G3DSA:3.40.50.300

DFDDMVGLERHLKEMVSLLDLDKEGVKMVGISGPAGI

HMMPfam: PF00931
IPR002182
190-443 NB-ARC,NBS
NB-ARC

ERHLKEMVSLLDLDKEGVKMVGISGPAGIGKSTIAKALHSRHSSTFQHNCFVDNLWENYKICTGEHGVKLRLHEQFVSKILKQNGLELTHLSVIKDRLQDKKVLIILDDVESLAQLETLADMTWFGPGSRVIVTTENKEILQQHGIGDIYQVGYPSESEALTIFCLSAFKQASPPDGFMDLADEVVRICDKLPLALCVLGSSLLRKSQTDWEDELPRLRNCLDGIESVLKVGFESLNEKDQALFLYITVFFNYE

HMMSmart: SM00382
IPR003593
206-381 AAA,NBS
AAA+ ATPase domain

GVKMVGISGPAGIGKSTIAKALHSRHSSTFQHNCFVDNLWENYKICTGEHGVKLRLHEQFVSKILKQNGLELTHLSVIKDRLQDKKVLIILDDVESLAQLETLADMTWFGPGSRVIVTTENKEILQQHGIGDIYQVGYPSESEALTIFCLSAFKQASPPDGFMDLADEVVRICDKL

FPrintScan: PR00364
IPR000767
209-224 DISEASERSIST
Disease resistance protein

MVGISGPAGIGKSTIA

Gene3D: G3DSA:3.40.50.300
219-257 G3DSA:3.40.50.300

GKSTIAKALHSRHSSTFQHNCFVDNLWENYKICTGEHGV

FPrintScan: PR00364
IPR000767
286-300 DISEASERSIST
Disease resistance protein

RLQDKKVLIILDDVE

FPrintScan: PR00364
IPR000767
378-392 DISEASERSIST
Disease resistance protein

CDKLPLALCVLGSSL

superfamily: SSF46785
412-518 SSF46785

DGIESVLKVGFESLNEKDQALFLYITVFFNYECADHVTLMLAKSNLNVRLGLKNLANRYLIHIDHDQKKRVVVHRLLRVMAIQVCTKQKPWKSQILVDAEKIAYVLE

superfamily: SSF52058
513-840 SSF52058,LRR

IAYVLEEATGNRSIKGVSFDTAEIDELMISPKAFEKMCNLLFLKVYDAGWHTGKRKLDIPEDIKFPRTIRLFHWDAYSGKRLPSSFFAENLVEVNMQDSELQKLWEGTQCLANLKKIDLSRSSCLTELPDLSNATNLEDLYVGSCTALVELPSSIGNLHKLAHIMMYSCESLEVIPSLINLTSLTFLNMNKCSRLRRFPDIPTSIEDVQVTGTTLEELPASLTHCSGLQTIKISGSVNLKIFYTELPVSVSHINISNSGIEWITEDCIKGLHNLHDLCLSGCKRLVSLPELPRSLKILQADDCDSLESLNGHLNTPNAELYFANCFKL

Gene3D: G3DSA:3.80.10.10
540-823 G3DSA:3.80.10.10

MISPKAFEKMCNLLFLKVYDAGWHTGKRKLDIPEDIKFPRTIRLFHWDAYSGKRLPSSFFAENLVEVNMQDSELQKLWEGTQCLANLKKIDLSRSSCLTELPDLSNATNLEDLYVGSCTALVELPSSIGNLHKLAHIMMYSCESLEVIPSLINLTSLTFLNMNKCSRLRRFPDIPTSIEDVQVTGTTLEELPASLTHCSGLQTIKISGSVNLKIFYTELPVSVSHINISNSGIEWITEDCIKGLHNLHDLCLSGCKRLVSLPELPRSLKILQADDCDSLESLNG

HMMPfam: PF07725
IPR011713
602-621 LRR_3
Leucine-rich repeat 3

NLVEVNMQDSELQKLWEGTQ

FPrintScan: PR00364
IPR000767
621-637 DISEASERSIST
Disease resistance protein

QCLANLKKIDLSRSSCL






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox