PRGDB00047083 (disease resistance protein (TIR-NBS-LRR class), putative)

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disease resistance protein (TIR-NBS-LRR class), putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 30696913 (NM_105062)
Gene Class TNL
Domain Type LRR, LRR, NBS, LRR, TIR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana disease resistance protein (TIR-NBS-LRR class), putative (AT1G63880) mRNA, complete cds.

DNA Sequence

ATGGCTTCTCCTTCTTCTTTTTCGTCTCAGAACTACAAGTTCAATGTCTTCGCGAGCTTCCACGGGCCTGACGTCCGTAAAACACTTCTCAGTCACATACGACTACAGTTTAACCGCAACGGGATCACTATGTTTGATGATCAAAAGATTGTGAGAAGCGCAACGATCGGGCCTTCACTAGTAGAAGCTATAAAAGAATCAAGGATCTCGATCGTGATTCTCTCCAAGAAATATGCTTCATCAAGCTGGTGTTTGGATGAATTGGTGGAGATCTTGGAGTGCAAGAAAGCTATGGGACAGATAGTGATGACCATCTTCTACGGAGTAGATCCATCCGATGTGCGGAAACAGATCGGGAAATTCGGGATCGCTTTCAATGAAACTTGTGCACGTAAGACCGAGGAGGAAAGGCAAAAATGGAGCAAAGCTTTGAACCAAGTCAGCAATATTGCTGGAGAAGACTTCTTAAGATGGGACAATGAAGCTATAATGATCGAAAAGATTGCCAGAGATGTTTTAGATAAACTGAATGCTACACCATCTAGGGATTTTGATGGTATGGTGGGAATTGAAGCTCATTTGAGAGAAATAAAATCTTTGCTAGATTTAGATAATGTTGAAGTTAAGATAGTTGCAATCGCTGGTCCTGCTGGGATTGGTAAGACTACTATTGCCAGAGCTTTATATGGTTTACTCTCTAAAAGGTTTCAACTTAGTTGTTTTGTGGACAACCTTAGGGGAAGCTATCATAGTGGTTTTGATGAGTATGGTTTTAAGCTGCATTTACAAGAACAGTTTCTTTCAAAGGTTTTGAACCAAAGTGGAATGAGAATATGCCATTTAGGTGCAATAAAAGAAAATCTAAGCGACCAGAGAGTGCTCATCATTCTTGATGATGTGAACAAGTTAAAGCAGTTGGAGGCTTTGGCTAATGAAACTACATGGTTCGGTCCAGGAAGTAGGATTGTAGTTACCACAGAAAACAAAGAGCTTTTGCAGCAACATGGTATTAACAATACCTACCATGTGGGGTTTCCATCTGATGAAGATGCTCTCAAGATCTTGTGTAGTTATGCTTTTAAACAGACCTCTCCACGTCATGGTTTTGAAGAGCTTTCAGAAAGTGTAACAAAGCTTTGTGGTAAGCTTCCGTTGGGTCTTTGTGTCGTGGGTTCATCTTTACGGGGGAAGAAGGAAGACGAATGGGAAGATGTTGTGACCAGGCTGGAAACTATTCTTGATCAAGATATCGAAGACGTACTAAGAGTTGGCTATGAAAGTTTAGATGAGAATGCGCAAACACTATTTCTCCACATTGCAATCTTCTTCAACAAGGAAGATGGTGATCTTGTGAAAACCATGTTCGCTGAGAGTGACTTGGATGTCAAATACGGGCTGAAAATCCTTGAAAACAGATCTCTCATAAAGATGAAGATTTTTAGCAATGGGGATACAAAAATAGTGATGCACAGATTACTACAACAAATGGGTAAAAGAGCTATTCAAAAACAAGAGCCTTGGGAACGCCAAATCTTAATAGATGCCCGGGAGATTTGTCATGTTCTTGAGCACGCCAAAGGTACCGGCTGGAATGTTCATGGTATGTCATTTGATATATCAAGAATCAGTGAAGTGTCTATAAGGAAGAAAGCTTTTAAAAGAATGCCTAATCTTCAGTTCCTCAAAGTTTACAAAAGTAAAGATGATGGGAATAATAGAATGCATGTACCTGAGGAGATGGACTTTCCTTGTCTCCTAAGGTTGTTAGATTGGAAGGCGTACCCAAGCAAGAGTCTTCCTCCTACATTTAATCCAGAACATCTTGTCGAACTCAATATGCATTCTAGCCAGCTCGAGTACCTCTGGCAAGGAACTCAGCCGCTCAAGAATCTCAAGAAGATGGATTTGTCACAGTCCAAGAATTTGAAGCAACTCCCGGATCTTTCAAATGCTACAAATCTGGAGTATTTGTATCTGATGGGTTGCGAGAGTTTGATAGAGATTCCATCATCTATTTCGCATCTTCATAAACTAGAGATGTTGGCGACGGTGGGCTGTATAAATCTAGAAGTCATACCAGCTCACATGAACTTGGAATCTCTTCAAACAGTCTACTTGGGAGGATGCTCAAGACTAAGAAATATTCCAGTGATGTCAACGAACATCAGATATTTATTTATAACGAACACAGCAGTTGAAGGCGTGCCTCTTTGCCCTGGTCTTAAGACTCTCGATGTAAGCGGCAGCAGAAATTTCAAGGGATTATTAACACATCTCCCCACGAGTTTAACAACACTAAACCTATGCTATACTGATATTGAAAGAATTCCAGATTGTTTCAAATCTCTTCATCAACTAAAAGGGGTTAATCTACGTGGCTGCAGAAGACTCGCATCTTTGCCAGAGCTCCCTCGTTCGCTACTAACCCTAGTGGCAGACGACTGTGAATCACTGGAGACGGTGTTTTGCCCTTTGAACACTTTAAAAGCAAGCTTCAGTTTCGCCAACTGCTTCAAATTGGACCGAGAAGCACGAAGAGCAATTATCCAACAATCGTTTTTCATGGGAAAGGCTGTGTTACCAGGAAGAGAAGTGCCTGCAGTGTTCGATCACAGAGCCAAAGGATATTCATTGACCATTCGTCCAGACGGTAACCCTTACACCAGCTTTGTATTTTGCGTTGTGGTTTCCCGTAACCAAAAAAGTGATAAAACCATTCCTCCCTCACTATTGTGGCGTCGCATCATAGCTCAAGATGAGGGCTATCCCGTTGAGGTCTGGAACCGCATAGGAGATGTCTTCAAATATCGAACGGAACATCTATTAATATTTCACTTCGACTTTCTAGAATTCGACAACAGGGATATAGTGTTCGAATTCAGCAGCGAATCCCACGACTTCGACATTATTGAATGTGGTGCTAAAGTCTTGGCCGAAAAGAGCATCAAAGAAAGCTATGAATCTGGATCCGACCAAGCCTTTGAAGACGACGTTGTGTTTGAACCCAGCAAAGCCTTCGGAGACGAAAAATACGGAGATTGTTGTATTTTGTAA


Protein sequences

Name Description Sequence
disease resistance protein (TIR-NBS-LRR class), putative disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana].

MASPSSFSSQNYKFNVFASFHGPDVRKTLLSHIRLQFNRNGITMFDDQKIVRSATIGPSLVEAIKESRISIVILSKKYASSSWCLDELVEILECKKAMGQIVMTIFYGVDPSDVRKQIGKFGIAFNETCARKTEEERQKWSKALNQVSNIAGEDFLRWDNEAIMIEKIARDVLDKLNATPSRDFDGMVGIEAHLREIKSLLDLDNVEVKIVAIAGPAGIGKTTIARALYGLLSKRFQLSCFVDNLRGSYHSGFDEYGFKLHLQEQFLSKVLNQSGMRICHLGAIKENLSDQRVLIILDDVNKLKQLEALANETTWFGPGSRIVVTTENKELLQQHGINNTYHVGFPSDEDALKILCSYAFKQTSPRHGFEELSESVTKLCGKLPLGLCVVGSSLRGKKEDEWEDVVTRLETILDQDIEDVLRVGYESLDENAQTLFLHIAIFFNKEDGDLVKTMFAESDLDVKYGLKILENRSLIKMKIFSNGDTKIVMHRLLQQMGKRAIQKQEPWERQILIDAREICHVLEHAKGTGWNVHGMSFDISRISEVSIRKKAFKRMPNLQFLKVYKSKDDGNNRMHVPEEMDFPCLLRLLDWKAYPSKSLPPTFNPEHLVELNMHSSQLEYLWQGTQPLKNLKKMDLSQSKNLKQLPDLSNATNLEYLYLMGCESLIEIPSSISHLHKLEMLATVGCINLEVIPAHMNLESLQTVYLGGCSRLRNIPVMSTNIRYLFITNTAVEGVPLCPGLKTLDVSGSRNFKGLLTHLPTSLTTLNLCYTDIERIPDCFKSLHQLKGVNLRGCRRLASLPELPRSLLTLVADDCESLETVFCPLNTLKASFSFANCFKLDREARRAIIQQSFFMGKAVLPGREVPAVFDHRAKGYSLTIRPDGNPYTSFVFCVVVSRNQKSDKTIPPSLLWRRIIAQDEGYPVEVWNRIGDVFKYRTEHLLIFHFDFLEFDNRDIVFEFSSESHDFDIIECGAKVLAEKSIKESYESGSDQAFEDDVVFEPSKAFGDEKYGDCCIL

Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:3.40.50.10140
9-148 G3DSA:3.40.50.10140

SQNYKFNVFASFHGPDVRKTLLSHIRLQFNRNGITMFDDQKIVRSATIGPSLVEAIKESRISIVILSKKYASSSWCLDELVEILECKKAMGQIVMTIFYGVDPSDVRKQIGKFGIAFNETCARKTEEERQKWSKALNQVS

ProfileScan: PS50104
IPR000157
12-150 TIR
Toll/interleukin-1 receptor homology (TIR) domain

YKFNVFASFHGPDVRKTLLSHIRLQFNRNGITMFDDQKIVRSATIGPSLVEAIKESRISIVILSKKYASSSWCLDELVEILECKKAMGQIVMTIFYGVDPSDVRKQIGKFGIAFNETCARKTEEERQKWSKALNQVSNI

HMMSmart: SM00255
IPR000157
13-150 TIR
Toll/interleukin-1 receptor homology (TIR) domain

KFNVFASFHGPDVRKTLLSHIRLQFNRNGITMFDDQKIVRSATIGPSLVEAIKESRISIVILSKKYASSSWCLDELVEILECKKAMGQIVMTIFYGVDPSDVRKQIGKFGIAFNETCARKTEEERQKWSKALNQVSNI

HMMPfam: PF01582
IPR000157
16-146 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFASFHGPDVRKTLLSHIRLQFNRNGITMFDDQKIVRSATIGPSLVEAIKESRISIVILSKKYASSSWCLDELVEILECKKAMGQIVMTIFYGVDPSDVRKQIGKFGIAFNETCARKTEEERQKWSKALNQ

HMMPanther: PTHR11017
36-1001 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

QFNRNGITMFDDQKIVRSATIGPSLVEAIKESRISIVILSKKYASSSWCLDELVEILECKKAMGQIVMTIFYGVDPSDVRKQIGKFGIAFNETCARKTEEERQKWSKALNQVSNIAGEDFLRWDNEAIMIEKIARDVLDKLNATPSRDFDGMVGIEAHLREIKSLLDLDNVEVKIVAIAGPAGIGKTTIARALYGLLSKRFQLSCFVDNLRGSYHSGFDEYGFKLHLQEQFLSKVLNQSGMRICHLGAIKENLSDQRVLIILDDVNKLKQLEALANETTWFGPGSRIVVTTENKELLQQHGINNTYHVGFPSDEDALKILCSYAFKQTSPRHGFEELSESVTKLCGKLPLGLCVVGSSLRGKKEDEWEDVVTRLETILDQDIEDVLRVGYESLDENAQTLFLHIAIFFNKEDGDLVKTMFAESDLDVKYGLKILENRSLIKMKIFSNGDTKIVMHRLLQQMGKRAIQKQEPWERQILIDAREICHVLEHAKGTGWNVHGMSFDISRISEVSIRKKAFKRMPNLQFLKVYKSKDDGNNRMHVPEEMDFPCLLRLLDWKAYPSKSLPPTFNPEHLVELNMHSSQLEYLWQGTQPLKNLKKMDLSQSKNLKQLPDLSNATNLEYLYLMGCESLIEIPSSISHLHKLEMLATVGCINLEVIPAHMNLESLQTVYLGGCSRLRNIPVMSTNIRYLFITNTAVEGVPLCPGLKTLDVSGSRNFKGLLTHLPTSLTTLNLCYTDIERIPDCFKSLHQLKGVNLRGCRRLASLPELPRSLLTLVADDCESLETVFCPLNTLKASFSFANCFKLDREARRAIIQQSFFMGKAVLPGREVPAVFDHRAKGYSLTIRPDGNPYTSFVFCVVVSRNQKSDKTIPPSLLWRRIIAQDEGYPVEVWNRIGDVFKYRTEHLLIFHFDFLEFDNRDIVFEFSSESHDFDIIECGAKVLAEKSIKESYESGSDQAFEDDVVFE

HMMPanther: PTHR11017:SF20
36-1001 PTHR11017:SF20,SUBFAMILY NOT NAMED

QFNRNGITMFDDQKIVRSATIGPSLVEAIKESRISIVILSKKYASSSWCLDELVEILECKKAMGQIVMTIFYGVDPSDVRKQIGKFGIAFNETCARKTEEERQKWSKALNQVSNIAGEDFLRWDNEAIMIEKIARDVLDKLNATPSRDFDGMVGIEAHLREIKSLLDLDNVEVKIVAIAGPAGIGKTTIARALYGLLSKRFQLSCFVDNLRGSYHSGFDEYGFKLHLQEQFLSKVLNQSGMRICHLGAIKENLSDQRVLIILDDVNKLKQLEALANETTWFGPGSRIVVTTENKELLQQHGINNTYHVGFPSDEDALKILCSYAFKQTSPRHGFEELSESVTKLCGKLPLGLCVVGSSLRGKKEDEWEDVVTRLETILDQDIEDVLRVGYESLDENAQTLFLHIAIFFNKEDGDLVKTMFAESDLDVKYGLKILENRSLIKMKIFSNGDTKIVMHRLLQQMGKRAIQKQEPWERQILIDAREICHVLEHAKGTGWNVHGMSFDISRISEVSIRKKAFKRMPNLQFLKVYKSKDDGNNRMHVPEEMDFPCLLRLLDWKAYPSKSLPPTFNPEHLVELNMHSSQLEYLWQGTQPLKNLKKMDLSQSKNLKQLPDLSNATNLEYLYLMGCESLIEIPSSISHLHKLEMLATVGCINLEVIPAHMNLESLQTVYLGGCSRLRNIPVMSTNIRYLFITNTAVEGVPLCPGLKTLDVSGSRNFKGLLTHLPTSLTTLNLCYTDIERIPDCFKSLHQLKGVNLRGCRRLASLPELPRSLLTLVADDCESLETVFCPLNTLKASFSFANCFKLDREARRAIIQQSFFMGKAVLPGREVPAVFDHRAKGYSLTIRPDGNPYTSFVFCVVVSRNQKSDKTIPPSLLWRRIIAQDEGYPVEVWNRIGDVFKYRTEHLLIFHFDFLEFDNRDIVFEFSSESHDFDIIECGAKVLAEKSIKESYESGSDQAFEDDVVFE

superfamily: SSF52540
67-437 SSF52540

SRISIVILSKKYASSSWCLDELVEILECKKAMGQIVMTIFYGVDPSDVRKQIGKFGIAFNETCARKTEEERQKWSKALNQVSNIAGEDFLRWDNEAIMIEKIARDVLDKLNATPSRDFDGMVGIEAHLREIKSLLDLDNVEVKIVAIAGPAGIGKTTIARALYGLLSKRFQLSCFVDNLRGSYHSGFDEYGFKLHLQEQFLSKVLNQSGMRICHLGAIKENLSDQRVLIILDDVNKLKQLEALANETTWFGPGSRIVVTTENKELLQQHGINNTYHVGFPSDEDALKILCSYAFKQTSPRHGFEELSESVTKLCGKLPLGLCVVGSSLRGKKEDEWEDVVTRLETILDQDIEDVLRVGYESLDENAQTLFL

Gene3D: G3DSA:3.40.50.300
183-215 G3DSA:3.40.50.300

DFDGMVGIEAHLREIKSLLDLDNVEVKIVAIAG

HMMPfam: PF00931
IPR002182
191-447 NB-ARC,NBS
NB-ARC

EAHLREIKSLLDLDNVEVKIVAIAGPAGIGKTTIARALYGLLSKRFQLSCFVDNLRGSYHSGFDEYGFKLHLQEQFLSKVLNQSGMRICHLGAIKENLSDQRVLIILDDVNKLKQLEALANETTWFGPGSRIVVTTENKELLQQHGINNTYHVGFPSDEDALKILCSYAFKQTSPRHGFEELSESVTKLCGKLPLGLCVVGSSLRGKKEDEWEDVVTRLETILDQDIEDVLRVGYESLDENAQTLFLHIAIFFNKED

HMMSmart: SM00382
IPR003593
207-424 AAA,NBS
AAA+ ATPase domain

EVKIVAIAGPAGIGKTTIARALYGLLSKRFQLSCFVDNLRGSYHSGFDEYGFKLHLQEQFLSKVLNQSGMRICHLGAIKENLSDQRVLIILDDVNKLKQLEALANETTWFGPGSRIVVTTENKELLQQHGINNTYHVGFPSDEDALKILCSYAFKQTSPRHGFEELSESVTKLCGKLPLGLCVVGSSLRGKKEDEWEDVVTRLETILDQDIEDVLRVG

FPrintScan: PR00364
IPR000767
210-225 DISEASERSIST
Disease resistance protein

IVAIAGPAGIGKTTIA

Gene3D: G3DSA:3.40.50.300
216-230 G3DSA:3.40.50.300

PAGIGKTTIARALYG

Gene3D: G3DSA:3.40.50.300
231-335 G3DSA:3.40.50.300

LLSKRFQLSCFVDNLRGSYHSGFDEYGFKLHLQEQFLSKVLNQSGMRICHLGAIKENLSDQRVLIILDDVNKLKQLEALANETTWFGPGSRIVVTTENKELLQQH

FPrintScan: PR00364
IPR000767
287-301 DISEASERSIST
Disease resistance protein

NLSDQRVLIILDDVN

FPrintScan: PR00364
IPR000767
380-394 DISEASERSIST
Disease resistance protein

CGKLPLGLCVVGSSL

Gene3D: G3DSA:3.40.50.300
410-444 G3DSA:3.40.50.300

ETILDQDIEDVLRVGYESLDENAQTLFLHIAIFFN

superfamily: SSF52058
507-855 SSF52058,LRR

WERQILIDAREICHVLEHAKGTGWNVHGMSFDISRISEVSIRKKAFKRMPNLQFLKVYKSKDDGNNRMHVPEEMDFPCLLRLLDWKAYPSKSLPPTFNPEHLVELNMHSSQLEYLWQGTQPLKNLKKMDLSQSKNLKQLPDLSNATNLEYLYLMGCESLIEIPSSISHLHKLEMLATVGCINLEVIPAHMNLESLQTVYLGGCSRLRNIPVMSTNIRYLFITNTAVEGVPLCPGLKTLDVSGSRNFKGLLTHLPTSLTTLNLCYTDIERIPDCFKSLHQLKGVNLRGCRRLASLPELPRSLLTLVADDCESLETVFCPLNTLKASFSFANCFKLDREARRAIIQQSFFM

Gene3D: G3DSA:3.80.10.10
536-816 G3DSA:3.80.10.10

SFDISRISEVSIRKKAFKRMPNLQFLKVYKSKDDGNNRMHVPEEMDFPCLLRLLDWKAYPSKSLPPTFNPEHLVELNMHSSQLEYLWQGTQPLKNLKKMDLSQSKNLKQLPDLSNATNLEYLYLMGCESLIEIPSSISHLHKLEMLATVGCINLEVIPAHMNLESLQTVYLGGCSRLRNIPVMSTNIRYLFITNTAVEGVPLCPGLKTLDVSGSRNFKGLLTHLPTSLTTLNLCYTDIERIPDCFKSLHQLKGVNLRGCRRLASLPELPRSLLTLVADDCE

HMMPfam: PF07725
IPR011713
607-626 LRR_3
Leucine-rich repeat 3

HLVELNMHSSQLEYLWQGTQ

FPrintScan: PR00364
IPR000767
626-642 DISEASERSIST
Disease resistance protein

QPLKNLKKMDLSQSKNL

HMMPfam: PF00560
IPR001611
653-675 LRR_1
Leucine-rich repeat

NLEYLYLMGCESLIEIPSSISHL






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


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