PRGDB00047086 (disease resistance protein (TIR-NBS class), putative)
| disease resistance protein (TIR-NBS class), putative | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 145337464 (NM_105945) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGGCTTCTTCTTCCTCCTCATCAGAGCATAAAGTGTTCCTGAGTTTTAGAAGAGAGGACACCGGTAGAACTTTTGTCAGCCATCTATACCGTTCGTTGGATCAAAAAGAAATTCGAACTTACAAATTTGAAAACCAGCAGGCGGGAGACGGAAAGAGGATATCTTCTGAGGTCAAGCAGGCTATCAACGAGTCTAGGATTGCTGTCGTTGTGATATCGGAGAACTACGTCTCTTCCGTCTTGTGCTTGGACGTACTCGCGAAGATAATTGAGCGTTTGCCTCTCATCAAAATCGAAACAGTCTTCTACGAAGTGGATCCGGGGGATTTGACAAGACCAACTGGTAAATTCGCCGACGACTTCAGGAGGCATGAAGCGAGAGAAAATCGGAGAACCGTGAATCGTTGGAGGGATGCACTGGACCAATTGGTTAGCATCACCAACAGTAATTTTTGTTCGCGCAATTGGGAGGATGATTCCAAGATGATCGATGATCTAATCATCAGACTAATCAATATTTATTTTTCTAAATACTACACACCGGACGTAGATATAATCGCAGAAACGACAGTTGGCCTAGACGCGAGCGTTCTGGGATTGATGACAGATATCGATATGAAGTACAAACTCAACAGTCTGTCTGGGTCTGTAGAATCTGGATTTGGACTTGAGAGATATGCACTTGAAGCCACATCTGTTATGGACGATATGTCAAATGAATCGCCTTCTCCCACATCTGACGACTCCAACGGTCTTGTTGGGATGTATCGTCATAAGAAAGCGGTCTATGGATTGCTTGATTTGGAATCTAAGAACCAGGTCCGTACAATTGGCATTTGGGGTTTCCAAGGCGTCGGGAAAACGACACTTGCTGAATGTGTTTTCGACGACATCTCAAGCCACTTTCAACACTACTGCTTCCTAACCAATGCCAATAAAATCTATCAGAACCGCATCTCACCAAGTTTACTAAAACATCTTACAAGGAGAAGGAGTTCTGAAGACATATTTGATGCCATCAAACCAAGTCTTGTAAACCGAAAAGTCCTGTTTGTTGTTGATGGTGTTGATGCTACTTACAATGAACAATTTAACGATGCCATGAAGGTTACCCGTTGGCTCGGTCCTGGCAGTAGAATTATCATGACATCTAGATTCAAGTCTTCGCTTAAGTTCGGTGGGGCAAAATACGAGATGGAGTGTCTGAGATATGAGGAAGCTCTACAACTCTTCTCTCTATACGCTTTCAAGAAAACTTACCCTCTTATTGGTTTTGAACTATTCTCCATTCGTGCTGTCCACTTTGCTGGACGTCTTCCTCTGTCCCTGAAAGTACTCGGTTCATTTCTATATGATAAAGACGAAGAGAGTTGGAAAAGAACATTGCACAAGCTAGAAGCATCACAAGATAACGATCGTCGTTATGTCTCTAACTACATCGGGGCAGGTGAATACCTTCCAAGACGTCAAATAGAATTGGAACAATATGTAAGTCCAGATGAAGAAGAATATTCACCTTCATATATCATGTCACTTTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein (TIR-NBS class), putative | disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana]. | MASSSSSSEHKVFLSFRREDTGRTFVSHLYRSLDQKEIRTYKFENQQAGDGKRISSEVKQAINESRIAVVVISENYVSSVLCLDVLAKIIERLPLIKIETVFYEVDPGDLTRPTGKFADDFRRHEARENRRTVNRWRDALDQLVSITNSNFCSRNWEDDSKMIDDLIIRLINIYFSKYYTPDVDIIAETTVGLDASVLGLMTDIDMKYKLNSLSGSVESGFGLERYALEATSVMDDMSNESPSPTSDDSNGLVGMYRHKKAVYGLLDLESKNQVRTIGIWGFQGVGKTTLAECVFDDISSHFQHYCFLTNANKIYQNRISPSLLKHLTRRRSSEDIFDAIKPSLVNRKVLFVVDGVDATYNEQFNDAMKVTRWLGPGSRIIMTSRFKSSLKFGGAKYEMECLRYEEALQLFSLYAFKKTYPLIGFELFSIRAVHFAGRLPLSLKVLGSFLYDKDEESWKRTLHKLEASQDNDRRYVSNYIGAGEYLPRRQIELEQYVSPDEEEYSPSYIMSL |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
2-149 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
ASSSSSSEHKVFLSFRREDTGRTFVSHLYRSLDQKEIRTYKFENQQAGDGKRISSEVKQAINESRIAVVVISENYVSSVLCLDVLAKIIERLPLIKIETVFYEVDPGDLTRPTGKFADDFRRHEARENRRTVNRWRDALDQLVSITNS |
| Gene3D: G3DSA:3.40.50.10140 | 6-144 | G3DSA:3.40.50.10140 | SSSEHKVFLSFRREDTGRTFVSHLYRSLDQKEIRTYKFENQQAGDGKRISSEVKQAINESRIAVVVISENYVSSVLCLDVLAKIIERLPLIKIETVFYEVDPGDLTRPTGKFADDFRRHEARENRRTVNRWRDALDQLV |
| ProfileScan: PS50104 IPR000157
|
8-146 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
SEHKVFLSFRREDTGRTFVSHLYRSLDQKEIRTYKFENQQAGDGKRISSEVKQAINESRIAVVVISENYVSSVLCLDVLAKIIERLPLIKIETVFYEVDPGDLTRPTGKFADDFRRHEARENRRTVNRWRDALDQLVSI |
| HMMSmart: SM00255 IPR000157
|
9-146 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
EHKVFLSFRREDTGRTFVSHLYRSLDQKEIRTYKFENQQAGDGKRISSEVKQAINESRIAVVVISENYVSSVLCLDVLAKIIERLPLIKIETVFYEVDPGDLTRPTGKFADDFRRHEARENRRTVNRWRDALDQLVSI |
| HMMPfam: PF01582 IPR000157
|
12-141 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFLSFRREDTGRTFVSHLYRSLDQKEIRTYKFENQQAGDGKRISSEVKQAINESRIAVVVISENYVSSVLCLDVLAKIIERLPLIKIETVFYEVDPGDLTRPTGKFADDFRRHEARENRRTVNRWRDALD |
| HMMPanther: PTHR11017 | 102-472 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | FYEVDPGDLTRPTGKFADDFRRHEARENRRTVNRWRDALDQLVSITNSNFCSRNWEDDSKMIDDLIIRLINIYFSKYYTPDVDIIAETTVGLDASVLGLMTDIDMKYKLNSLSGSVESGFGLERYALEATSVMDDMSNESPSPTSDDSNGLVGMYRHKKAVYGLLDLESKNQVRTIGIWGFQGVGKTTLAECVFDDISSHFQHYCFLTNANKIYQNRISPSLLKHLTRRRSSEDIFDAIKPSLVNRKVLFVVDGVDATYNEQFNDAMKVTRWLGPGSRIIMTSRFKSSLKFGGAKYEMECLRYEEALQLFSLYAFKKTYPLIGFELFSIRAVHFAGRLPLSLKVLGSFLYDKDEESWKRTLHKLEASQDND |
| HMMPanther: PTHR11017:SF20 | 102-472 | PTHR11017:SF20,SUBFAMILY NOT NAMED | FYEVDPGDLTRPTGKFADDFRRHEARENRRTVNRWRDALDQLVSITNSNFCSRNWEDDSKMIDDLIIRLINIYFSKYYTPDVDIIAETTVGLDASVLGLMTDIDMKYKLNSLSGSVESGFGLERYALEATSVMDDMSNESPSPTSDDSNGLVGMYRHKKAVYGLLDLESKNQVRTIGIWGFQGVGKTTLAECVFDDISSHFQHYCFLTNANKIYQNRISPSLLKHLTRRRSSEDIFDAIKPSLVNRKVLFVVDGVDATYNEQFNDAMKVTRWLGPGSRIIMTSRFKSSLKFGGAKYEMECLRYEEALQLFSLYAFKKTYPLIGFELFSIRAVHFAGRLPLSLKVLGSFLYDKDEESWKRTLHKLEASQDND |
| superfamily: SSF52540 | 235-465 | SSF52540 | DDMSNESPSPTSDDSNGLVGMYRHKKAVYGLLDLESKNQVRTIGIWGFQGVGKTTLAECVFDDISSHFQHYCFLTNANKIYQNRISPSLLKHLTRRRSSEDIFDAIKPSLVNRKVLFVVDGVDATYNEQFNDAMKVTRWLGPGSRIIMTSRFKSSLKFGGAKYEMECLRYEEALQLFSLYAFKKTYPLIGFELFSIRAVHFAGRLPLSLKVLGSFLYDKDEESWKRTLHKL |
| HMMPfam: PF00931 IPR002182
|
258-474 | NB-ARC,NBS NB-ARC
|
HKKAVYGLLDLESKNQVRTIGIWGFQGVGKTTLAECVFDDISSHFQHYCFLTNANKIYQNRISPSLLKHLTRRRSSEDIFDAIKPSLVNRKVLFVVDGVDATYNEQFNDAMKVTRWLGPGSRIIMTSRFKSSLKFGGAKYEMECLRYEEALQLFSLYAFKKTYPLIGFELFSIRAVHFAGRLPLSLKVLGSFLYDKDEESWKRTLHKLEASQDNDRR |
| Gene3D: G3DSA:3.40.50.300 | 275-310 | G3DSA:3.40.50.300 | RTIGIWGFQGVGKTTLAECVFDDISSHFQHYCFLTN |
| FPrintScan: PR00364 IPR000767
|
276-291 | DISEASERSIST Disease resistance protein
|
TIGIWGFQGVGKTTLA |
| FPrintScan: PR00364 IPR000767
|
343-357 | DISEASERSIST Disease resistance protein
|
SLVNRKVLFVVDGVD |
| FPrintScan: PR00364 IPR000767
|
436-450 | DISEASERSIST Disease resistance protein
|
AGRLPLSLKVLGSFL |
List of Contributions
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