PRGDB00047089 (RGA6)

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RGA6
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 66271013 (DQ018368)
Gene Class NL
Domain Type NBS, LRR
Gene Species (Populus tomentosa x P. bolleana) x P. tomentosa var. truncata

Comment?

(Populus tomentosa x P. bolleana) x P. tomentosa var. truncata BS-LRR type disease resistance protein (RGA6) gene, partial cds.

DNA Sequence

GGGATGGGGGGTATAGGTAAGACTACTGTTGCAAGGGTAGTATATGATAGGATTCGTTGGCAATTTGAAGGTAGCTGTTTCTTAGCAAATGTCAGAGAAGATCTTGCTAAGAAAGGTGGACAACGCCGTTTACAGGAGCAACTTCTTTCTGAAATCTTAATGGAACGTGCTAATATATGTGATTCTTCTAGAGGAATTGAAATGATAAAGCGGAGGTTACAACGTAAAAAGATTCTTGTTGTTCTTGATGATGTAGATGACCGTAAACAACTAGAATCCCTGGCTGCGGAGAGTAAATGGTTTGGTCCAGAGAGTAGAATTATCATAACAAGCAGAGATAAACAAGTGTTGACTAGAAATGGTGTTACTAGAATTTATGAGGCTGAGAAATTGAATGATGATGATGCTCTTATGTTGTTTAGCCAGAAAGCTTTCAAAAAAGACCAACCTGTTGAGGATTTTGTGAAACTATCCAAGCAAGTTGTGGGTTATGCTAATGGGCCTTCCACTTGCCCTCAAAGTC


Protein sequences

Name Description Sequence
BS-LRR type disease resistance protein BS-LRR type disease resistance protein [(Populus tomentosa x P. bolleana) x P. tomentosa var. truncata].

GMGGIGKTTVARVVYDRIRWQFEGSCFLANVREDLAKKGGQRRLQEQLLSEILMERANICDSSRGIEMIKRRLQRKKILVVLDDVDDRKQLESLAAESKWFGPESRIIITSRDKQVLTRNGVTRIYEAEKLNDDDALMLFSQKAFKKDQPVEDFVKLSKQVVGYANGPSTCPQS


Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-167 NB-ARC,NBS
NB-ARC

GMGGIGKTTVARVVYDRIRWQFEGSCFLANVREDLAKKGGQRRLQEQLLSEILMERANICDSSRGIEMIKRRLQRKKILVVLDDVDDRKQLESLAAESKWFGPESRIIITSRDKQVLTRNGVTRIYEAEKLNDDDALMLFSQKAFKKDQPVEDFVKLSKQVVGYANG

HMMPanther: PTHR11017
1-167 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGIGKTTVARVVYDRIRWQFEGSCFLANVREDLAKKGGQRRLQEQLLSEILMERANICDSSRGIEMIKRRLQRKKILVVLDDVDDRKQLESLAAESKWFGPESRIIITSRDKQVLTRNGVTRIYEAEKLNDDDALMLFSQKAFKKDQPVEDFVKLSKQVVGYANG

superfamily: SSF52540
1-168 SSF52540

GMGGIGKTTVARVVYDRIRWQFEGSCFLANVREDLAKKGGQRRLQEQLLSEILMERANICDSSRGIEMIKRRLQRKKILVVLDDVDDRKQLESLAAESKWFGPESRIIITSRDKQVLTRNGVTRIYEAEKLNDDDALMLFSQKAFKKDQPVEDFVKLSKQVVGYANGP

HMMPanther: PTHR11017:SF20
1-167 PTHR11017:SF20,SUBFAMILY NOT NAMED

GMGGIGKTTVARVVYDRIRWQFEGSCFLANVREDLAKKGGQRRLQEQLLSEILMERANICDSSRGIEMIKRRLQRKKILVVLDDVDDRKQLESLAAESKWFGPESRIIITSRDKQVLTRNGVTRIYEAEKLNDDDALMLFSQKAFKKDQPVEDFVKLSKQVVGYANG

Gene3D: G3DSA:3.40.50.300
1-112 G3DSA:3.40.50.300

GMGGIGKTTVARVVYDRIRWQFEGSCFLANVREDLAKKGGQRRLQEQLLSEILMERANICDSSRGIEMIKRRLQRKKILVVLDDVDDRKQLESLAAESKWFGPESRIIITSR






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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