PRGDB00047096 (putative disease resistance protein)

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putative disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 85541778 (DQ341407)
Gene Class NL
Domain Type NBS, LRR
Gene Species Ipomoea batatas

Comment?

Ipomoea batatas clone SPRGA-13 putative disease resistance protein gene, partial cds.

DNA Sequence

GGGGGGATAGGTAAGACTACCTTAGCAAAAGCCGTATTTAACCAAATTTATAGGGCATTTGAAGGTAGTTGCTTTCTTGATGTTAGATCAGAATGTTCAAAGGGAGGGAGTGCATATTTAAACCAATTACAGAAGCAACTTCTTTGTAAAACTCTCAAAACGACAAGATTTGAAGTTGATAATGTTGATGAAGGAATAAGTTTAATCAAGTTAAGACTTGGATTAAAAAGGCTTCTCATTGTTGTTGATGATGTAGACCATGAAAGTCAATTAGATGCATTAGTCGGAGAGTGCAATTGGTTTGGTTCAGGCAGCATCATTATCATTACAACTAGAAATGTTGATTTGCTAAATGGCCTTGGAAATGGTTGTGAGAAGTATAATGTTGTGGTGTTAAGCTCCGTTGAATCTTTGGAGCTCTTTAGTTGGCATGCTTTTAAGGACTCATATCCTTTGGAGGATTCTTTAGAACTACCAAACATGATAGTAAGTTATGCTAGAGGACTTCCTTTGGCGGC


Protein sequences

Name Description Sequence
putative disease resistance protein putative disease resistance protein [Ipomoea batatas].

GGIGKTTLAKAVFNQIYRAFEGSCFLDVRSECSKGGSAYLNQLQKQLLCKTLKTTRFEVDNVDEGISLIKLRLGLKRLLIVVDDVDHESQLDALVGECNWFGSGSIIIITTRNVDLLNGLGNGCEKYNVVVLSSVESLELFSWHAFKDSYPLEDSLELPNMIVSYARGLPLAA


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-172 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGIGKTTLAKAVFNQIYRAFEGSCFLDVRSECSKGGSAYLNQLQKQLLCKTLKTTRFEVDNVDEGISLIKLRLGLKRLLIVVDDVDHESQLDALVGECNWFGSGSIIIITTRNVDLLNGLGNGCEKYNVVVLSSVESLELFSWHAFKDSYPLEDSLELPNMIVSYARGLPLA

superfamily: SSF52540
1-167 SSF52540

GGIGKTTLAKAVFNQIYRAFEGSCFLDVRSECSKGGSAYLNQLQKQLLCKTLKTTRFEVDNVDEGISLIKLRLGLKRLLIVVDDVDHESQLDALVGECNWFGSGSIIIITTRNVDLLNGLGNGCEKYNVVVLSSVESLELFSWHAFKDSYPLEDSLELPNMIVSYAR

HMMPfam: PF00931
IPR002182
1-172 NB-ARC,NBS
NB-ARC

GGIGKTTLAKAVFNQIYRAFEGSCFLDVRSECSKGGSAYLNQLQKQLLCKTLKTTRFEVDNVDEGISLIKLRLGLKRLLIVVDDVDHESQLDALVGECNWFGSGSIIIITTRNVDLLNGLGNGCEKYNVVVLSSVESLELFSWHAFKDSYPLEDSLELPNMIVSYARGLPLA

HMMPanther: PTHR11017:SF20
1-172 PTHR11017:SF20,SUBFAMILY NOT NAMED

GGIGKTTLAKAVFNQIYRAFEGSCFLDVRSECSKGGSAYLNQLQKQLLCKTLKTTRFEVDNVDEGISLIKLRLGLKRLLIVVDDVDHESQLDALVGECNWFGSGSIIIITTRNVDLLNGLGNGCEKYNVVVLSSVESLELFSWHAFKDSYPLEDSLELPNMIVSYARGLPLA

Gene3D: G3DSA:3.40.50.300
2-119 G3DSA:3.40.50.300

GIGKTTLAKAVFNQIYRAFEGSCFLDVRSECSKGGSAYLNQLQKQLLCKTLKTTRFEVDNVDEGISLIKLRLGLKRLLIVVDDVDHESQLDALVGECNWFGSGSIIIITTRNVDLLNG


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List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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