PRGDB00047123 (disease resistance protein (TIR-NBS class), putative)

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disease resistance protein (TIR-NBS class), putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 145340034 (NM_117010)
Gene Class TNL
Domain Type NBS, TIR, LRR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana disease resistance protein (TIR-NBS class), putative (AT4G09420) mRNA, complete cds.

DNA Sequence

ATGTATTCTTCTTCTTCATCTTCTACCCCCAAGTTTGATGTCTTCCTGAGTTTTAGCGTAGAAGCCGAAACTTTAGTCTCGGATCTTCGCAGTTCGTTTTCTGAAAATGGCATTACAATGAAAGATGACGATCTAGAGAAGGGAGTCTCGTCCTTAGGTTCTGAGCGAAGCGAAGGTATCAGGGAGTCAAAAGTCGCTGTTGTGGTGATCTCCCAGAGCTATGCGATCTCTGCTCAGTGCCTGAACGAGCTCCAAACGATAGTAAACTTTCACGATGAACGCCGTATCTCCATTCTGCCCATCTTCTACGGAGTTGATTATGATGATGTAAGAAACCAGATTAAAGAACTCGCAGCGTCCTTCAGAAAGCTTGGTAAAGAATATCCATCTGAGAAGGTTCAAGCATGGATGATTGCTCTTATCAAACTCATCAACATATCCCGCTCAGATTCACGAATCCATGACGACGAGACTACGATCGATATGGTTATTACAAGTCAGGTCAAGCAAATTCTATTGGATAAGGATAAGCAGATCAATCTGAAAGCAACCATCTCGCATACTGTCTCAAACAAGCAGATCAATTCATTGACAACAAAAAACGTTGGACTGATCGGGTTGGATCGTCATATGCTAGCACTGAACGAATTGTTGGATTTAAAATCTAACGAGGAAGTTCGCTTGATTGGGATTTGCGGTCAAGGAGGCGTCGGCAAGACCACGCTAGCGAGATATGTGTATGAAGAACTATTCAAAAACTTCCATGCCCATGTGTTTGTAGACAATGCCGGAAAGATTTATAAGCAAGATACCGATGAGTCACATTCACAAAAATCTTTAACATCAAAGGAGATTCAAGAGGGCACTCAAACGGTGACAAGGACTCTGACTGTGGCCTCTGATTTTATCAAATCGACGGTTTCACACCAGAGAAGTTTGCTAGTCGTTGATTGTGTAGATAACATCAAACAGTTAGAGGAAATCGCAAACATTGTCGGCTTGTGTTTTCCTGGAAGCAGAGTCATCCTTGTTACACAGGACAAGAAATTGCTAGATGACTTTGGTGTGGAGCATGTCTACGAGGTCCAGTCTCTGAGATACGATGAAGCTCTTCAAGTCTTCTCTCAATCTGCATTCAACCAGCAACACCCTCCAGCTAGTTTTGAATCACTCTCCTTTCGTGCTGTCCGGGTAGCTGGTTTCCTTCCTCTGCTTCTTAAAATCCTCGGTTCTTCTTTACAAGACAAGGATGGCAAGTATTGGGAGAAGGAACTGCAAAGACTGGAGGGAGGCCAAGAAAAAGCAATTATGGAAGTAATGAAGAAAAGCTGCACAAGAGAAAAAGTCCCTACATTTATCTTTCCTCTAAACTGA


Protein sequences

Name Description Sequence
disease resistance protein (TIR-NBS class), putative disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana].

MYSSSSSSTPKFDVFLSFSVEAETLVSDLRSSFSENGITMKDDDLEKGVSSLGSERSEGIRESKVAVVVISQSYAISAQCLNELQTIVNFHDERRISILPIFYGVDYDDVRNQIKELAASFRKLGKEYPSEKVQAWMIALIKLINISRSDSRIHDDETTIDMVITSQVKQILLDKDKQINLKATISHTVSNKQINSLTTKNVGLIGLDRHMLALNELLDLKSNEEVRLIGICGQGGVGKTTLARYVYEELFKNFHAHVFVDNAGKIYKQDTDESHSQKSLTSKEIQEGTQTVTRTLTVASDFIKSTVSHQRSLLVVDCVDNIKQLEEIANIVGLCFPGSRVILVTQDKKLLDDFGVEHVYEVQSLRYDEALQVFSQSAFNQQHPPASFESLSFRAVRVAGFLPLLLKILGSSLQDKDGKYWEKELQRLEGGQEKAIMEVMKKSCTREKVPTFIFPLN

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
1-149 TIR
Toll/interleukin-1 receptor homology (TIR) domain

MYSSSSSSTPKFDVFLSFSVEAETLVSDLRSSFSENGITMKDDDLEKGVSSLGSERSEGIRESKVAVVVISQSYAISAQCLNELQTIVNFHDERRISILPIFYGVDYDDVRNQIKELAASFRKLGKEYPSEKVQAWMIALIKLINISRS

Gene3D: G3DSA:3.40.50.10140
9-134 G3DSA:3.40.50.10140

TPKFDVFLSFSVEAETLVSDLRSSFSENGITMKDDDLEKGVSSLGSERSEGIRESKVAVVVISQSYAISAQCLNELQTIVNFHDERRISILPIFYGVDYDDVRNQIKELAASFRKLGKEYPSEKVQ

ProfileScan: PS50104
IPR000157
10-146 TIR
Toll/interleukin-1 receptor homology (TIR) domain

PKFDVFLSFSVEAETLVSDLRSSFSENGITMKDDDLEKGVSSLGSERSEGIRESKVAVVVISQSYAISAQCLNELQTIVNFHDERRISILPIFYGVDYDDVRNQIKELAASFRKLGKEYPSEKVQAWMIALIKLINI

HMMSmart: SM00255
IPR000157
11-146 TIR
Toll/interleukin-1 receptor homology (TIR) domain

KFDVFLSFSVEAETLVSDLRSSFSENGITMKDDDLEKGVSSLGSERSEGIRESKVAVVVISQSYAISAQCLNELQTIVNFHDERRISILPIFYGVDYDDVRNQIKELAASFRKLGKEYPSEKVQAWMIALIKLINI

HMMPfam: PF01582
IPR000157
14-137 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFSVEAETLVSDLRSSFSENGITMKDDDLEKGVSSLGSERSEGIRESKVAVVVISQSYAISAQCLNELQTIVNFHDERRISILPIFYGVDYDDVRNQIKELAASFRKLGKEYPSEKVQAWM

HMMPanther: PTHR11017:SF20
54-443 PTHR11017:SF20,SUBFAMILY NOT NAMED

SERSEGIRESKVAVVVISQSYAISAQCLNELQTIVNFHDERRISILPIFYGVDYDDVRNQIKELAASFRKLGKEYPSEKVQAWMIALIKLINISRSDSRIHDDETTIDMVITSQVKQILLDKDKQINLKATISHTVSNKQINSLTTKNVGLIGLDRHMLALNELLDLKSNEEVRLIGICGQGGVGKTTLARYVYEELFKNFHAHVFVDNAGKIYKQDTDESHSQKSLTSKEIQEGTQTVTRTLTVASDFIKSTVSHQRSLLVVDCVDNIKQLEEIANIVGLCFPGSRVILVTQDKKLLDDFGVEHVYEVQSLRYDEALQVFSQSAFNQQHPPASFESLSFRAVRVAGFLPLLLKILGSSLQDKDGKYWEKELQRLEGGQEKAIMEVMKKS

HMMPanther: PTHR11017
54-443 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

SERSEGIRESKVAVVVISQSYAISAQCLNELQTIVNFHDERRISILPIFYGVDYDDVRNQIKELAASFRKLGKEYPSEKVQAWMIALIKLINISRSDSRIHDDETTIDMVITSQVKQILLDKDKQINLKATISHTVSNKQINSLTTKNVGLIGLDRHMLALNELLDLKSNEEVRLIGICGQGGVGKTTLARYVYEELFKNFHAHVFVDNAGKIYKQDTDESHSQKSLTSKEIQEGTQTVTRTLTVASDFIKSTVSHQRSLLVVDCVDNIKQLEEIANIVGLCFPGSRVILVTQDKKLLDDFGVEHVYEVQSLRYDEALQVFSQSAFNQQHPPASFESLSFRAVRVAGFLPLLLKILGSSLQDKDGKYWEKELQRLEGGQEKAIMEVMKKS

Gene3D: G3DSA:3.40.50.300
184-241 G3DSA:3.40.50.300

TISHTVSNKQINSLTTKNVGLIGLDRHMLALNELLDLKSNEEVRLIGICGQGGVGKTT

superfamily: SSF52540
187-436 SSF52540

HTVSNKQINSLTTKNVGLIGLDRHMLALNELLDLKSNEEVRLIGICGQGGVGKTTLARYVYEELFKNFHAHVFVDNAGKIYKQDTDESHSQKSLTSKEIQEGTQTVTRTLTVASDFIKSTVSHQRSLLVVDCVDNIKQLEEIANIVGLCFPGSRVILVTQDKKLLDDFGVEHVYEVQSLRYDEALQVFSQSAFNQQHPPASFESLSFRAVRVAGFLPLLLKILGSSLQDKDGKYWEKELQRLEGGQEKAI

HMMPfam: PF00931
IPR002182
210-432 NB-ARC,NBS
NB-ARC

HMLALNELLDLKSNEEVRLIGICGQGGVGKTTLARYVYEELFKNFHAHVFVDNAGKIYKQDTDESHSQKSLTSKEIQEGTQTVTRTLTVASDFIKSTVSHQRSLLVVDCVDNIKQLEEIANIVGLCFPGSRVILVTQDKKLLDDFGVEHVYEVQSLRYDEALQVFSQSAFNQQHPPASFESLSFRAVRVAGFLPLLLKILGSSLQDKDGKYWEKELQRLEGGQ

FPrintScan: PR00364
IPR000767
228-243 DISEASERSIST
Disease resistance protein

LIGICGQGGVGKTTLA

Gene3D: G3DSA:3.40.50.300
242-322 G3DSA:3.40.50.300

LARYVYEELFKNFHAHVFVDNAGKIYKQDTDESHSQKSLTSKEIQEGTQTVTRTLTVASDFIKSTVSHQRSLLVVDCVDNI

FPrintScan: PR00364
IPR000767
306-320 DISEASERSIST
Disease resistance protein

TVSHQRSLLVVDCVD

FPrintScan: PR00364
IPR000767
399-413 DISEASERSIST
Disease resistance protein

AGFLPLLLKILGSSL






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


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