PRGDB00047136 (disease resistance protein (TIR-NBS class), putative)

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disease resistance protein (TIR-NBS class), putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 145337466 (NM_105948)
Gene Class TNL
Domain Type TIR, NBS, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana disease resistance protein (TIR-NBS class), putative (AT1G72900) mRNA, complete cds.

DNA Sequence

ATGTCTTCTGCTACTGCGACTTATAACTACGATGTTTTTCTGAGTTTCAGAGGACCCGACACTCGCCGCAAGTTCATCAGCTTTCTCTACAAAGAACTTGTTGGAAGGGACATTCGAACCTTTAAAGACGACAAAGAGCTAGAGAATGGCCAGATGATTTCTCCGGAGCTCATACTCGCCATCGAGGATTCGAGATTTGCCGTCGTTGTTGTCTCCGTGAACTACGCTGCGTCTTCTTGGTGTCTCGATGAGCTCGTAAAGATCATGGATATCCAGAAGAACAAGGGTTCCATCACCGTGATGCCTATCTTCTACGGCGTGAATCCGTGTCATTTGAGGAGGCAAATCGGAGATGTCGCTGAACAGTTTAAGAAGCACGAGGCAAGAGAAAAAGATCTTGAGAAAGTGCTTAAATGGAGGCAAGCGTTGGCCGCTTTGGCAGATATCTCCGGCGATTGTTCAGGGGAAGATGACTCGAAGCTGGTGGACGTAATCGCTGACAAGATATCAAAAGAGCTGATGATAGTTACAAGAATAAGCAATGGGAGGAACCTAGTTGGGATTGATAAACACATGAACGAACTTAACCGATTGATGGATTTGAATTCCAACAAAGGTAAGAGAATGGTTGGGATTTGGGCAAGAGGAGGAAGTTGTAGATCGGCTCTAGCTAAATATGTTTATCAGACATCCTGTCAACACTTTGATAGCCATTGTTTTCTTGGAAACGTGAAACGGATTTGTCAGGGTAACTACTTTGAAAGCCATCTACACAAAGAGTTTCTGGATAATATTCAAGGAGAAAACTCTAGCAAACAAAGTCTCAAGAAGCAAAAGGTTCTGCTTGTGGCAGACGACGTCGATAAGCTTGAACAGTTAGATGCTCTTGCAGGGGATTTCAGCGGTTTTGGTCCGGGGAGTGTTGTTATCATCACTACAAAAGATAAGCAGTTGTTGATTTCTTATGGTATACAGCTTGTCTACGAAGCTGAGTTTTTGACATTCCAGAAATTTTGTCGTAGCTTCCGATCATTGGCCTTTAAAAAGAGAGACGACATTTCTGCTGCGTTCGAGTGGGCTTTGTATATATAA


Protein sequences

Name Description Sequence
disease resistance protein (TIR-NBS class), putative disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana].

MSSATATYNYDVFLSFRGPDTRRKFISFLYKELVGRDIRTFKDDKELENGQMISPELILAIEDSRFAVVVVSVNYAASSWCLDELVKIMDIQKNKGSITVMPIFYGVNPCHLRRQIGDVAEQFKKHEAREKDLEKVLKWRQALAALADISGDCSGEDDSKLVDVIADKISKELMIVTRISNGRNLVGIDKHMNELNRLMDLNSNKGKRMVGIWARGGSCRSALAKYVYQTSCQHFDSHCFLGNVKRICQGNYFESHLHKEFLDNIQGENSSKQSLKKQKVLLVADDVDKLEQLDALAGDFSGFGPGSVVIITTKDKQLLISYGIQLVYEAEFLTFQKFCRSFRSLAFKKRDDISAAFEWALYI

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
2-151 TIR
Toll/interleukin-1 receptor homology (TIR) domain

SSATATYNYDVFLSFRGPDTRRKFISFLYKELVGRDIRTFKDDKELENGQMISPELILAIEDSRFAVVVVSVNYAASSWCLDELVKIMDIQKNKGSITVMPIFYGVNPCHLRRQIGDVAEQFKKHEAREKDLEKVLKWRQALAALADISG

Gene3D: G3DSA:3.40.50.10140
7-138 G3DSA:3.40.50.10140

TYNYDVFLSFRGPDTRRKFISFLYKELVGRDIRTFKDDKELENGQMISPELILAIEDSRFAVVVVSVNYAASSWCLDELVKIMDIQKNKGSITVMPIFYGVNPCHLRRQIGDVAEQFKKHEAREKDLEKVLK

ProfileScan: PS50104
IPR000157
8-149 TIR
Toll/interleukin-1 receptor homology (TIR) domain

YNYDVFLSFRGPDTRRKFISFLYKELVGRDIRTFKDDKELENGQMISPELILAIEDSRFAVVVVSVNYAASSWCLDELVKIMDIQKNKGSITVMPIFYGVNPCHLRRQIGDVAEQFKKHEAREKDLEKVLKWRQALAALADI

HMMSmart: SM00255
IPR000157
9-149 TIR
Toll/interleukin-1 receptor homology (TIR) domain

NYDVFLSFRGPDTRRKFISFLYKELVGRDIRTFKDDKELENGQMISPELILAIEDSRFAVVVVSVNYAASSWCLDELVKIMDIQKNKGSITVMPIFYGVNPCHLRRQIGDVAEQFKKHEAREKDLEKVLKWRQALAALADI

HMMPfam: PF01582
IPR000157
12-144 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFRGPDTRRKFISFLYKELVGRDIRTFKDDKELENGQMISPELILAIEDSRFAVVVVSVNYAASSWCLDELVKIMDIQKNKGSITVMPIFYGVNPCHLRRQIGDVAEQFKKHEAREKDLEKVLKWRQALA

HMMPanther: PTHR23155
21-297 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

TRRKFISFLYKELVGRDIRTFKDDKELENGQMISPELILAIEDSRFAVVVVSVNYAASSWCLDELVKIMDIQKNKGSITVMPIFYGVNPCHLRRQIGDVAEQFKKHEAREKDLEKVLKWRQALAALADISGDCSGEDDSKLVDVIADKISKELMIVTRISNGRNLVGIDKHMNELNRLMDLNSNKGKRMVGIWARGGSCRSALAKYVYQTSCQHFDSHCFLGNVKRICQGNYFESHLHKEFLDNIQGENSSKQSLKKQKVLLVADDVDKLEQLDALA

HMMPanther: PTHR23155:SF344
21-297 PTHR23155:SF344

TRRKFISFLYKELVGRDIRTFKDDKELENGQMISPELILAIEDSRFAVVVVSVNYAASSWCLDELVKIMDIQKNKGSITVMPIFYGVNPCHLRRQIGDVAEQFKKHEAREKDLEKVLKWRQALAALADISGDCSGEDDSKLVDVIADKISKELMIVTRISNGRNLVGIDKHMNELNRLMDLNSNKGKRMVGIWARGGSCRSALAKYVYQTSCQHFDSHCFLGNVKRICQGNYFESHLHKEFLDNIQGENSSKQSLKKQKVLLVADDVDKLEQLDALA

superfamily: SSF52540
168-361 SSF52540

KISKELMIVTRISNGRNLVGIDKHMNELNRLMDLNSNKGKRMVGIWARGGSCRSALAKYVYQTSCQHFDSHCFLGNVKRICQGNYFESHLHKEFLDNIQGENSSKQSLKKQKVLLVADDVDKLEQLDALAGDFSGFGPGSVVIITTKDKQLLISYGIQLVYEAEFLTFQKFCRSFRSLAFKKRDDISAAFEWAL

HMMPfam: PF00931
IPR002182
190-350 NB-ARC,NBS
NB-ARC

KHMNELNRLMDLNSNKGKRMVGIWARGGSCRSALAKYVYQTSCQHFDSHCFLGNVKRICQGNYFESHLHKEFLDNIQGENSSKQSLKKQKVLLVADDVDKLEQLDALAGDFSGFGPGSVVIITTKDKQLLISYGIQLVYEAEFLTFQKFCRSFRSLAFKKR






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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