PRGDB00047138 (disease resistance protein (TIR-NBS class), putative)

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disease resistance protein (TIR-NBS class), putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 18410200 (NM_105943)
Gene Class TNL
Domain Type NBS, TIR, LRR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana disease resistance protein (TIR-NBS class), putative (AT1G72850) mRNA, complete cds.

DNA Sequence

ATGTCTTCATCCTCCAAATTTGAAGTATTCCTTAGTTTCTGCAGCGAAGACCCCTCAAAAACTTTTGTCTCTGTTCTGGACCGTTGGTTGGAACAAAAAGACATTACCACCAATTTCAAAGATGACTCGTTTCTGGCAGAGGAGTCAAAACTCGCGGTTGTTGTAGTCTCAGAGAGCTATCCAATCTCTGTTTTGTGCCTCAATCAGCTCGAGAAGATCGTAAACTCTCACAGCGAAGGTAGACTTTCCATCCTCCCCATTTTCTACGGAGTTGATCCTTATAATGTTAGAAAACAGACTGGATATCTCGCGGAACCCTTTCAAGAGCTTGGTGAAGGATATCCAGATGACAAGATTCAAGAATGGAGGGTTTCTCTCACTAAACTCACCAACATACCTGCCCTGGATTCACGATATTGGAGCAACGAAGCGGACATGATTGAGTTAATTGCAAATGAAATCTTGAGTATCTCGAATAGAAAGCCATTAACAGCCAAAGGTGATGGACTGGTTGGTATGGATCGTCAGATGCAAACACTCTACAAATTGCTGGATTTCAAAGCTGCTGAAGAAGTTCGTTTGATAGGAATTTGGGGTCCAGGAGGCATTGGCAAGACGACGCTAGCGAGGTACGCTTATGAAGAAATATCTAGCAACTTCAAAGTTCATGTGTTTGTAGACAAGGCTGAAAAGATTTGTCACCAAGACCGGGATCTGTTAAAGTTGTTAACAGAAAAAGGTACAACACAGGGTTTAGATGTGGGGATTGATAAAATCAAATCAACATTTGGACACCGAAAAGGTCTGATCGTGATTGATTGCGTTGATAACATCAAACAGTTAAAGGAGATAGTATACCTTGCTCACTGGTTTATTCCAGGAAGTAGAGTGATCTTTGTTACACAGGACAGGAACCTGTTAGTTGAGTCTGGTGTGGAGCATGCTTATGAAGTTCAGTCTCTGAGATACGACGAAGCTCTTCAACTATTTTCTCACTCTGCTTTTGACCAGCAACACCCTCCCACTAGTTTTGAATCACTATCCCTTCGCGCTGTCCATATATCGGGTTTCCTTCCTCTGACACTTAAAATCCTCGGGTCTTCTCTACGAGGCAAGGATGAAGAGCGTTGGGAGAAGGAACTGCAACAACTGGAGGGAGACCAAGAGAAAGCTATTATGGAAATCACGAGCAAGAGATACACAAGAGCAGGAAAAAAAGAAGAAGATAAAGAGAAAATCACATCATTTATTCTCTTGAGTGATGATTAA


Protein sequences

Name Description Sequence
disease resistance protein (TIR-NBS class), putative disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana].

MSSSSKFEVFLSFCSEDPSKTFVSVLDRWLEQKDITTNFKDDSFLAEESKLAVVVVSESYPISVLCLNQLEKIVNSHSEGRLSILPIFYGVDPYNVRKQTGYLAEPFQELGEGYPDDKIQEWRVSLTKLTNIPALDSRYWSNEADMIELIANEILSISNRKPLTAKGDGLVGMDRQMQTLYKLLDFKAAEEVRLIGIWGPGGIGKTTLARYAYEEISSNFKVHVFVDKAEKICHQDRDLLKLLTEKGTTQGLDVGIDKIKSTFGHRKGLIVIDCVDNIKQLKEIVYLAHWFIPGSRVIFVTQDRNLLVESGVEHAYEVQSLRYDEALQLFSHSAFDQQHPPTSFESLSLRAVHISGFLPLTLKILGSSLRGKDEERWEKELQQLEGDQEKAIMEITSKRYTRAGKKEEDKEKITSFILLSDD

Domains

Domain Start-End Description Sequence

ProfileScan: PS50104
IPR000157
1-132 TIR
Toll/interleukin-1 receptor homology (TIR) domain

MSSSSKFEVFLSFCSEDPSKTFVSVLDRWLEQKDITTNFKDDSFLAEESKLAVVVVSESYPISVLCLNQLEKIVNSHSEGRLSILPIFYGVDPYNVRKQTGYLAEPFQELGEGYPDDKIQEWRVSLTKLTNI

superfamily: SSF52200
IPR000157
1-135 TIR
Toll/interleukin-1 receptor homology (TIR) domain

MSSSSKFEVFLSFCSEDPSKTFVSVLDRWLEQKDITTNFKDDSFLAEESKLAVVVVSESYPISVLCLNQLEKIVNSHSEGRLSILPIFYGVDPYNVRKQTGYLAEPFQELGEGYPDDKIQEWRVSLTKLTNIPAL

Gene3D: G3DSA:3.40.50.10140
3-129 G3DSA:3.40.50.10140

SSSKFEVFLSFCSEDPSKTFVSVLDRWLEQKDITTNFKDDSFLAEESKLAVVVVSESYPISVLCLNQLEKIVNSHSEGRLSILPIFYGVDPYNVRKQTGYLAEPFQELGEGYPDDKIQEWRVSLTKL

HMMSmart: SM00255
IPR000157
6-132 TIR
Toll/interleukin-1 receptor homology (TIR) domain

KFEVFLSFCSEDPSKTFVSVLDRWLEQKDITTNFKDDSFLAEESKLAVVVVSESYPISVLCLNQLEKIVNSHSEGRLSILPIFYGVDPYNVRKQTGYLAEPFQELGEGYPDDKIQEWRVSLTKLTNI

HMMPfam: PF01582
IPR000157
9-123 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFCSEDPSKTFVSVLDRWLEQKDITTNFKDDSFLAEESKLAVVVVSESYPISVLCLNQLEKIVNSHSEGRLSILPIFYGVDPYNVRKQTGYLAEPFQELGEGYPDDKIQEWR

HMMPanther: PTHR11017:SF20
20-395 PTHR11017:SF20,SUBFAMILY NOT NAMED

KTFVSVLDRWLEQKDITTNFKDDSFLAEESKLAVVVVSESYPISVLCLNQLEKIVNSHSEGRLSILPIFYGVDPYNVRKQTGYLAEPFQELGEGYPDDKIQEWRVSLTKLTNIPALDSRYWSNEADMIELIANEILSISNRKPLTAKGDGLVGMDRQMQTLYKLLDFKAAEEVRLIGIWGPGGIGKTTLARYAYEEISSNFKVHVFVDKAEKICHQDRDLLKLLTEKGTTQGLDVGIDKIKSTFGHRKGLIVIDCVDNIKQLKEIVYLAHWFIPGSRVIFVTQDRNLLVESGVEHAYEVQSLRYDEALQLFSHSAFDQQHPPTSFESLSLRAVHISGFLPLTLKILGSSLRGKDEERWEKELQQLEGDQEKAIMEI

HMMPanther: PTHR11017
20-395 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

KTFVSVLDRWLEQKDITTNFKDDSFLAEESKLAVVVVSESYPISVLCLNQLEKIVNSHSEGRLSILPIFYGVDPYNVRKQTGYLAEPFQELGEGYPDDKIQEWRVSLTKLTNIPALDSRYWSNEADMIELIANEILSISNRKPLTAKGDGLVGMDRQMQTLYKLLDFKAAEEVRLIGIWGPGGIGKTTLARYAYEEISSNFKVHVFVDKAEKICHQDRDLLKLLTEKGTTQGLDVGIDKIKSTFGHRKGLIVIDCVDNIKQLKEIVYLAHWFIPGSRVIFVTQDRNLLVESGVEHAYEVQSLRYDEALQLFSHSAFDQQHPPTSFESLSLRAVHISGFLPLTLKILGSSLRGKDEERWEKELQQLEGDQEKAIMEI

superfamily: SSF52540
168-392 SSF52540

DGLVGMDRQMQTLYKLLDFKAAEEVRLIGIWGPGGIGKTTLARYAYEEISSNFKVHVFVDKAEKICHQDRDLLKLLTEKGTTQGLDVGIDKIKSTFGHRKGLIVIDCVDNIKQLKEIVYLAHWFIPGSRVIFVTQDRNLLVESGVEHAYEVQSLRYDEALQLFSHSAFDQQHPPTSFESLSLRAVHISGFLPLTLKILGSSLRGKDEERWEKELQQLEGDQEKAI

Gene3D: G3DSA:3.40.50.300
169-280 G3DSA:3.40.50.300

GLVGMDRQMQTLYKLLDFKAAEEVRLIGIWGPGGIGKTTLARYAYEEISSNFKVHVFVDKAEKICHQDRDLLKLLTEKGTTQGLDVGIDKIKSTFGHRKGLIVIDCVDNIKQ

HMMPfam: PF00931
IPR002182
176-390 NB-ARC,NBS
NB-ARC

QMQTLYKLLDFKAAEEVRLIGIWGPGGIGKTTLARYAYEEISSNFKVHVFVDKAEKICHQDRDLLKLLTEKGTTQGLDVGIDKIKSTFGHRKGLIVIDCVDNIKQLKEIVYLAHWFIPGSRVIFVTQDRNLLVESGVEHAYEVQSLRYDEALQLFSHSAFDQQHPPTSFESLSLRAVHISGFLPLTLKILGSSLRGKDEERWEKELQQLEGDQEK

FPrintScan: PR00364
IPR000767
194-209 DISEASERSIST
Disease resistance protein

LIGIWGPGGIGKTTLA

FPrintScan: PR00364
IPR000767
262-276 DISEASERSIST
Disease resistance protein

TFGHRKGLIVIDCVD

FPrintScan: PR00364
IPR000767
355-369 DISEASERSIST
Disease resistance protein

SGFLPLTLKILGSSL






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


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