PRGDB00047141 (RGA)

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RGA
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 81250736 (DQ239436)
Gene Class NL
Domain Type NBS, LRR
Gene Species Zizania latifolia

Comment?

Zizania latifolia clone Zi-YL18 disease resistance gene analog (RGA) gene, partial cds.

DNA Sequence

GGGACAGGGGGAGTAGGCAAGACAACTCTGGCACAAAAAATATACAATGATGACAAACTAAAAGAAGTCTTTAGCAAAAAAGCATGGATATGTGTGTCTCAGAAGTACTCTGCAGTTGACCTTTTGAAAGAAGTTCTTCAAAATTTTGGGGTCCATCAAGAGCAAGGCGAATCTATAGCATGGCTCAGCAGCAAGCTTGCTGCAACAGTTGAAAAGGAGAGTTTCCTCCTAGTGTTCGATGATGTTTGGCATCCTGAGGTATGGACCGATTTACTAAGAACTCCATTACATGCTGCTGCTACCGGAATAGTTATAGTAACTACTCGGCATGATAATGTTGCAATGACAATTGGGGTGGAACATATGCATCAAGTTGAACTGATGTCAACAAAAGTAGGTTGGGAGCTACTTTGGAGGAGCATGAACATCAATGAAGAGAGAGAAGTCGAAAATCTGCGAGATATCGGAATGGAGATTGTTTGTAAATGTGGTGGCCTCCCTCTGACTCT


Protein sequences

Name Description Sequence
disease resistance gene analog disease resistance gene analog [Zizania latifolia].

GTGGVGKTTLAQKIYNDDKLKEVFSKKAWICVSQKYSAVDLLKEVLQNFGVHQEQGESIAWLSSKLAATVEKESFLLVFDDVWHPEVWTDLLRTPLHAAATGIVIVTTRHDNVAMTIGVEHMHQVELMSTKVGWELLWRSMNINEEREVENLRDIGMEIVCKCGGLPLTL


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF121
1-153 PTHR23155:SF121,SUBFAMILY NOT NAMED

GTGGVGKTTLAQKIYNDDKLKEVFSKKAWICVSQKYSAVDLLKEVLQNFGVHQEQGESIAWLSSKLAATVEKESFLLVFDDVWHPEVWTDLLRTPLHAAATGIVIVTTRHDNVAMTIGVEHMHQVELMSTKVGWELLWRSMNINEEREVENLR

HMMPfam: PF00931
IPR002182
1-170 NB-ARC,NBS
NB-ARC

GTGGVGKTTLAQKIYNDDKLKEVFSKKAWICVSQKYSAVDLLKEVLQNFGVHQEQGESIAWLSSKLAATVEKESFLLVFDDVWHPEVWTDLLRTPLHAAATGIVIVTTRHDNVAMTIGVEHMHQVELMSTKVGWELLWRSMNINEEREVENLRDIGMEIVCKCGGLPLTL

superfamily: SSF52540
1-170 SSF52540

GTGGVGKTTLAQKIYNDDKLKEVFSKKAWICVSQKYSAVDLLKEVLQNFGVHQEQGESIAWLSSKLAATVEKESFLLVFDDVWHPEVWTDLLRTPLHAAATGIVIVTTRHDNVAMTIGVEHMHQVELMSTKVGWELLWRSMNINEEREVENLRDIGMEIVCKCGGLPLTL

HMMPanther: PTHR23155
1-153 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GTGGVGKTTLAQKIYNDDKLKEVFSKKAWICVSQKYSAVDLLKEVLQNFGVHQEQGESIAWLSSKLAATVEKESFLLVFDDVWHPEVWTDLLRTPLHAAATGIVIVTTRHDNVAMTIGVEHMHQVELMSTKVGWELLWRSMNINEEREVENLR

Gene3D: G3DSA:3.40.50.300
1-111 G3DSA:3.40.50.300

GTGGVGKTTLAQKIYNDDKLKEVFSKKAWICVSQKYSAVDLLKEVLQNFGVHQEQGESIAWLSSKLAATVEKESFLLVFDDVWHPEVWTDLLRTPLHAAATGIVIVTTRHD


List of References

Yu Chen, Likun Long, Xiuyun Lin, Wanli Guo, Bao Liu
Isolation and characterization of a set of disease resistance-gene analogs (RGAs) from wild rice, Zizania latifolia Griseb. I. Introgression, copy number lability, sequence change, and DNA methylation alteration in several rice-Zizania introgression lines.
Genome: 2006, 49(2);150-8
PubMed:16498465 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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