PRGDB00047208 (CTV.4)

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CTV.4
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 160693199 (EU254166)
Gene Class Unknown
Domain Type LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR
Gene Species Citrus maxima

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Citrus maxima cultivar Mato Buntan pummelo NBS-LRR type disease resistance protein (CTV.4) gene, partial cds.

DNA Sequence

GGTTCCTACATGCCCTCATCTCCTTACTTTATTTCTTAACAATAACGAACTCTTACTGAGAATCAACACTGACTTCTTGCCGTCTATGCCTAGTCTCAAAGTTTTAAACCTCTCACGTTACATGGGATTATTGGAATTACCTTCGGGGATTTCAAAGTTGGTTTCACTTGAACACCTTGATCTTTCCACCACACTTATACGTGAGATTCCTGAAGATTTAACGGCGTTGGTAAATCTTAAATGTTTGAATTTGGAAAACGCAGGTTTTTTATTTAAAATTCCTCTGCAACTAATATCTAATTTTTTGAGGTTACATGTGCTGAGAATGTTCGGTACTGGTTATTTTTCCTGCGGCCTTTATCCAGAAGACAGCGTTTTATTTGGTGGGGGAGAACTCTTAGTAAAGGAGTTGCTTCATTTGAAACATCTAGAGGTATTGAGCTTGACCTTCGGAAGTTCTCATGCCCTCCAAAGTTTTTTGAACTCACATAAGTTACGAAGTTGTACTCAAGCTATGCTCCTCCAAGACTTCGAAGGTTCGACTTCGGTTGATGTTTCAGGCTTGGCAGATCTGAAGCGGCTCAAAAGATTACGGATTTCAGACTGTTATGAATTGGTAGAATTGAAGATTGATTATGCAGGGGAAGTACAACGTTATGGTTTCCACAGCCTTCAGAGTTTTGAAGTAAACTTTTGCTCTAAATTGAAGGACTTGACACTCCTTGTTTTGATTCCAAACCTCAAGTCCATTGCAGTAACAGATTGCGAGGCTATGGAAGAAATCATAAGTGTGGGAGAATTTGCTGGAAATCCAAA


Protein sequences

Name Description Sequence
NBS-LRR type disease resistance protein NBS-LRR type disease resistance protein [Citrus maxima].

VPTCPHLLTLFLNNNELLLRINTDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLTALVNLKCLNLENAGFLFKIPLQLISNFLRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCEAMEEIISVGEFAGNP

Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:3.80.10.10
4-256 G3DSA:3.80.10.10

CPHLLTLFLNNNELLLRINTDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLTALVNLKCLNLENAGFLFKIPLQLISNFLRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCE

superfamily: SSF52047
4-269 SSF52047,LRR

CPHLLTLFLNNNELLLRINTDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLTALVNLKCLNLENAGFLFKIPLQLISNFLRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCEAMEEIISVGEFAG

HMMPanther: PTHR23155:SF108
4-263 PTHR23155:SF108,SUBFAMILY NOT NAMED

CPHLLTLFLNNNELLLRINTDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLTALVNLKCLNLENAGFLFKIPLQLISNFLRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCEAMEEIIS

HMMPanther: PTHR23155
4-263 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

CPHLLTLFLNNNELLLRINTDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLTALVNLKCLNLENAGFLFKIPLQLISNFLRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCEAMEEIIS






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