PRGDB00047209 (CTV.4)

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CTV.4
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 160693197 (EU254165)
Gene Class Unknown
Domain Type LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR
Gene Species Citrus maxima

Comment?

Citrus maxima cultivar Kao Panne pummelo haplotype 2 NBS-LRR type disease resistance protein (CTV.4) gene, partial cds.

DNA Sequence

GGTTCCTACATGCCCTCATCTCCTTACTTTATTTCTTAACAATAACGAACTCTTACTGAGAATCAACACTGACTTCTTGCCGTCTATGCCTAGTCTCAAAGTTTTAAACCTCTCACGTTACATGGGATTATTGGAATTACCTTCGGGGATTTCAAAGTTGGTTTCACTTGAACACCTTGATCTTTCCACCACACTTATANGTGAGATTCCTGAAGATTTAACGGCGTTGGTAAATCTTAAATGTTTGAATTTGGAAAACGCATGTTTTTTATTTAAAATTCCTCTGCAACTAATATCTAATTTTTTGAGGTTACATGTGCTGAGAATGTTCGGTACTGGTTATTTTTCCTGCGGCCTTTATCCAGAAGACAGCGTTTTATTTGGTGGGGGAGAACTCTTAGTAAAGGAGTTGCTTCATTTGAAACATCTAGAGGTATTGAGCTTGACCTTCGGAAGTTCTCATGCCCTCCAAAGTTTTTTGAACTCACATAAGTTACGAAGTTGTACTCAAGCTATGCTCCTCCAAGACTTCGAAGGTTCGACTTCGGTTGATGTTTCAGGCTTGGCAGATCTGAAGCGGCTCAAAAGATTACGGATTTCAGACTGTTATGAATTGGTAGAATTGAAGATTGATTATGCAGGGGAAGTACAACGTTATGGTTTCCACAGCCTTCAGAGTTTTGAAGTAAACTTTTGCTCTAAATTGAAGGACTTGACACTCCTTGTTTTGATTCCAAACCTCAAGTCCATTGCAGTAACAGATTGCGAGGCTATGGAAGAAATCATAAGTGTGGGAGAATTTGCTGGAAATCCAAA


Protein sequences

Name Description Sequence
NBS-LRR type disease resistance protein NBS-LRR type disease resistance protein [Citrus maxima].

VPTCPHLLTLFLNNNELLLRINTDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIXEIPEDLTALVNLKCLNLENACFLFKIPLQLISNFLRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCEAMEEIISVGEFAGNP

Domains

Domain Start-End Description Sequence

superfamily: SSF52047
4-269 SSF52047,LRR

CPHLLTLFLNNNELLLRINTDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIXEIPEDLTALVNLKCLNLENACFLFKIPLQLISNFLRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCEAMEEIISVGEFAG

HMMPanther: PTHR23155:SF108
4-263 PTHR23155:SF108,SUBFAMILY NOT NAMED

CPHLLTLFLNNNELLLRINTDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIXEIPEDLTALVNLKCLNLENACFLFKIPLQLISNFLRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCEAMEEIIS

HMMPanther: PTHR23155
4-263 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

CPHLLTLFLNNNELLLRINTDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIXEIPEDLTALVNLKCLNLENACFLFKIPLQLISNFLRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCEAMEEIIS

Gene3D: G3DSA:3.80.10.10
4-209 G3DSA:3.80.10.10

CPHLLTLFLNNNELLLRINTDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIXEIPEDLTALVNLKCLNLENACFLFKIPLQLISNFLRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELK






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