PRGDB00047215 (CTV.4)

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CTV.4
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 160693185 (EU254159)
Gene Class Unknown
Domain Type LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR
Gene Species Citrus aurantium

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Citrus aurantium cultivar Rubidoux sour orange haplotype 1 NBS-LRR type disease resistance protein (CTV.4) gene, partial cds.

DNA Sequence

GGTTCCTACATGCCCTCATCTCCTTACTTTATTTCTTAACAATAACGAACTCTTACTGAGAATCAACAGTGACTTCTTGCCGTCTATGCCTAGTCTCAAAGTTTTAAACCTCTCACGTTACATGGGATTATTGGAATTACCTTCGGGGATTTCAAAGTTGGTTTCACTTGAACACCTTGATCTTTCCACCACACTTATACGTGAGATTCCTGAAGATTTAACGGCGTTGGTAAATCTTAAATGTTTGAATTTGGAAAACGCATGTTTTTTATTWAAAATTCCTCTGCAACTAATATCTAATTTTTTGAGGTTACATGTGCTGAGAATGTTCGGTACTGGTTATTTTTCCTGCGGCCTTTATCCAGAAGACAGCGTTTTATTTGGTGGGGGAGAACTCTTAGTAAAGGAGTTGCTTCATTTGAAACATCTAGAGGTATTGAGCTTGACCTTCGGAAGTTCTCATGCCCTCCAAAGTTTTTTGAACTCACATAAGTTACGAAGTTGTACTCAAGCTATGCTCCTCCAAGACTTCGAAGGTTCGACTTCGGTTGATGTTTCAGGCTTGGCAGATCTGAAGCGGCTCAAAAGATTACGGATTTCAGACTGTTATGAATTGGTAGAATTGAAGATTGATTATGCAGGGGAAGTACAACGTTATGGTTTCCACAGCCTTCAGAGTTTTGAAGTAAACTTTTGCTCTAAATTGAAGGACTTGACACTCCTTGTTTTGATTCCAAACCTCAAGTCCATTGCAGTAACAGATTGCGAGGCTATGGAAGAAATCATAAGTGTGGGAGAATTTGCTGGAAATCCAAA


Protein sequences

Name Description Sequence
NBS-LRR type disease resistance protein NBS-LRR type disease resistance protein [Citrus aurantium].

VPTCPHLLTLFLNNNELLLRINSDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLTALVNLKCLNLENACFLXKIPLQLISNFLRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCEAMEEIISVGEFAGNP

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF108
4-263 PTHR23155:SF108,SUBFAMILY NOT NAMED

CPHLLTLFLNNNELLLRINSDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLTALVNLKCLNLENACFLXKIPLQLISNFLRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCEAMEEIIS

superfamily: SSF52047
4-269 SSF52047,LRR

CPHLLTLFLNNNELLLRINSDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLTALVNLKCLNLENACFLXKIPLQLISNFLRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCEAMEEIISVGEFAG

HMMPanther: PTHR23155
4-263 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

CPHLLTLFLNNNELLLRINSDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLTALVNLKCLNLENACFLXKIPLQLISNFLRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCEAMEEIIS

Gene3D: G3DSA:3.80.10.10
4-97 G3DSA:3.80.10.10

CPHLLTLFLNNNELLLRINSDFLPSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLTALVNLKCLNLENACFLXKIPLQL

Gene3D: G3DSA:3.80.10.10
130-256 G3DSA:3.80.10.10

GELLVKELLHLKHLEVLSLTFGSSHALQSFLNSHKLRSCTQAMLLQDFEGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCE






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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