PRGDB00047231 (CTV.4)

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CTV.4
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 160693153 (EU254143)
Gene Class Unknown
Domain Type LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR
Gene Species Citrus webberi

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Citrus webberi cultivar Kalpi lime haplotype 2 NBS-LRR type disease resistance protein (CTV.4) gene, partial cds.

DNA Sequence

GGTTCCTACATGCCCTCATCTCCTTACTTTATTTCTTAACAATAACGAACTCTTACTTAGAATCAACACTGACTTCTTGCAGTCTATGCCTAGTCTCAAAGTTTTAAACCTCTCACGTTACATGGGATTATTGGAATTACCTTCNGGGATTTCAAAGTTGGTTTCACTTGAACACCTTGATCTTTCCACCACACTTATACGTGAGATTCCTGAAGATTTAAAGGCGTTGGTAAATCTTAAATTTTTGAATTTGGAAAACGCATGTTTTTTATTTAAAATTCCTCTGCAACTAATATCTAATTTTTCGAGGTTACATGTGCTGAGAATGTTCGGTACTGGTTATTTTTCCTGCGGCCTTTATCCAGAAGACAGCGTTTTATTTGGTGGGGGAGAACTCTTAGTAAAGGAGTTGCTTGATTTGAAACATCTAGAGGTATTAAGGTTGACCTTGGGAAGTTCTCGTGCCCTCCAAAGTTTTTTGACCTCACATATGCTACGAAGTTGTACTCAAGCTTTGCTCCTCCAAGACTTCAAAGGTTCGACCTCGGTTGATGTTCCTGGCTTGGCAAATCTGAAGCAGCTAAAAAGATTACGGATTTCAGACTGTTATGAATTGGTAGAATTGAAGATTGATTATGCAGGGGAAGTACAACATTTTGGTTTCCACAGCCTTCAGAGTTTTGAAGTAAGCTTTTGCTCTGAATTGAAGGACTTGACACTCCTTGTTTTGATTCCAAACCTCAAGTCCATTGCAGTAACAGATTGCGAGGCTATGGAAGAAATCATTAGTGTGGGAGAATTTGCTGGAAATCCAAA


Protein sequences

Name Description Sequence
NBS-LRR type disease resistance protein NBS-LRR type disease resistance protein [Citrus webberi].

VPTCPHLLTLFLNNNELLLRINTDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLKALVNLKFLNLENACFLFKIPLQLISNFSRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLDLKHLEVLRLTLGSSRALQSFLTSHMLRSCTQALLLQDFKGSTSVDVPGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVSFCSELKDLTLLVLIPNLKSIAVTDCEAMEEIISVGEFAGNP

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
4-263 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

CPHLLTLFLNNNELLLRINTDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLKALVNLKFLNLENACFLFKIPLQLISNFSRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLDLKHLEVLRLTLGSSRALQSFLTSHMLRSCTQALLLQDFKGSTSVDVPGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVSFCSELKDLTLLVLIPNLKSIAVTDCEAMEEIIS

superfamily: SSF52058
4-262 SSF52058,LRR

CPHLLTLFLNNNELLLRINTDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLKALVNLKFLNLENACFLFKIPLQLISNFSRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLDLKHLEVLRLTLGSSRALQSFLTSHMLRSCTQALLLQDFKGSTSVDVPGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVSFCSELKDLTLLVLIPNLKSIAVTDCEAMEEII

Gene3D: G3DSA:3.80.10.10
4-112 G3DSA:3.80.10.10

CPHLLTLFLNNNELLLRINTDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLKALVNLKFLNLENACFLFKIPLQLISNFSRLHVLRMFGT

HMMPanther: PTHR23155:SF108
4-263 PTHR23155:SF108,SUBFAMILY NOT NAMED

CPHLLTLFLNNNELLLRINTDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIREIPEDLKALVNLKFLNLENACFLFKIPLQLISNFSRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLDLKHLEVLRLTLGSSRALQSFLTSHMLRSCTQALLLQDFKGSTSVDVPGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVSFCSELKDLTLLVLIPNLKSIAVTDCEAMEEIIS

HMMPfam: PF13855
5-64 LRR_8,Leucine rich repeat

PHLLTLFLNNNELLLRINTDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTT

Gene3D: G3DSA:3.80.10.10
159-253 G3DSA:3.80.10.10

FLTSHMLRSCTQALLLQDFKGSTSVDVPGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVSFCSELKDLTLLVLIPNLKSIAVT






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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