PRGDB00047240 (CTV.4)

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CTV.4
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 160693135 (EU254134)
Gene Class Unknown
Domain Type LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR
Gene Species Atalantia ceylanica

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Atalantia ceylanica cultivar Ceylan NBS-LRR type disease resistance protein (CTV.4) gene, partial cds.

DNA Sequence

GGTTCCTACATGCCCTCATCTCCTTACTTTATTTCTTAACAATAACGAACTCTTACGGAGAATCAACAGTGACTTCTTGCAATCTATGTCTAGTCTCAAAGTTTTAAACCTCTCACGTTACATGGGATTATTGGAATTACCTTCGGGGATTTCAAAGTTGGTTTCACTTGAACACCTTGATCTTTCCACCACACTTATACAGGAGATTCCTGAAGATTTAAAGGCGTTGGTAAATCTTAAGTGTTTGAATTTGGAAAACGCAGGTTTTTTATTTAAAATTCCTCTGCAACTAATATCTAATTTTTCGAGGTTACATGTGCTGAGAATGTTCGGTATTGGTTATTTTTCCTGCGGCCTTTATCCAGGAGAAAGCGTTTTATTTGGTGGGGGAGAACTCTTAGTAGAGGAGTTGCTTGATTTGAAACATCTAGAGGTATTGAGCTTGACCTTGGGAAGTTCTTGTGCCCTCCAAAGTTTTTTGACCTCACATAAGTTACAAAGTTGTACTCAAGCTATGCTCCTCCAAGACTTCAAAGGTTCGACCTCGGTTGATGTTTCTGGCTTGGCAAATCTGAAGCAACTAAAAAGATTGCGGATTTCAGACTGTTATGAATTGGTAGAATTGAAGATTGATTATGCAGGGGAAGTACAACATTTTGGTTTCCACAGCCTTCAGAGTTTTGAAGTAAGCTTTTGCTCTAAATTGAAGGACCTGACACTCCTTGTTTTCATTCCAAACCTCAGGTCCATTGCAGTAACAAATTGCAGGGCTATGGAAAAAATCATAAGTGTAGGAGAATTTGCTGGAAATCCAAA


Protein sequences

Name Description Sequence
NBS-LRR type disease resistance protein NBS-LRR type disease resistance protein [Atalantia ceylanica].

VPTCPHLLTLFLNNNELLRRINSDFLQSMSSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIQEIPEDLKALVNLKCLNLENAGFLFKIPLQLISNFSRLHVLRMFGIGYFSCGLYPGESVLFGGGELLVEELLDLKHLEVLSLTLGSSCALQSFLTSHKLQSCTQAMLLQDFKGSTSVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVSFCSKLKDLTLLVFIPNLRSIAVTNCRAMEKIISVGEFAGNP

Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:3.80.10.10
4-112 G3DSA:3.80.10.10

CPHLLTLFLNNNELLRRINSDFLQSMSSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIQEIPEDLKALVNLKCLNLENAGFLFKIPLQLISNFSRLHVLRMFGI

superfamily: SSF52058
4-262 SSF52058,LRR

CPHLLTLFLNNNELLRRINSDFLQSMSSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIQEIPEDLKALVNLKCLNLENAGFLFKIPLQLISNFSRLHVLRMFGIGYFSCGLYPGESVLFGGGELLVEELLDLKHLEVLSLTLGSSCALQSFLTSHKLQSCTQAMLLQDFKGSTSVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVSFCSKLKDLTLLVFIPNLRSIAVTNCRAMEKII

HMMPanther: PTHR23155
4-263 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

CPHLLTLFLNNNELLRRINSDFLQSMSSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIQEIPEDLKALVNLKCLNLENAGFLFKIPLQLISNFSRLHVLRMFGIGYFSCGLYPGESVLFGGGELLVEELLDLKHLEVLSLTLGSSCALQSFLTSHKLQSCTQAMLLQDFKGSTSVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVSFCSKLKDLTLLVFIPNLRSIAVTNCRAMEKIIS

HMMPanther: PTHR23155:SF108
4-263 PTHR23155:SF108,SUBFAMILY NOT NAMED

CPHLLTLFLNNNELLRRINSDFLQSMSSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTTLIQEIPEDLKALVNLKCLNLENAGFLFKIPLQLISNFSRLHVLRMFGIGYFSCGLYPGESVLFGGGELLVEELLDLKHLEVLSLTLGSSCALQSFLTSHKLQSCTQAMLLQDFKGSTSVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVSFCSKLKDLTLLVFIPNLRSIAVTNCRAMEKIIS

Gene3D: G3DSA:3.80.10.10
179-256 G3DSA:3.80.10.10

GSTSVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVSFCSKLKDLTLLVFIPNLRSIAVTNCR






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Analyses

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