PRGDB00047297 (LRR)
| LRR | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 167594026 (EU424347) |
| Gene Class | RLP |
| Domain Type | LRR, LRR, Ser-Thr Kinase |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGCTTCTCGGTGTGAGCTACTCCTGATCTGCGTCTTGTCTCTCCTCTTCGCTGTCTCTTACTCCAAGACGTTGAAGCGAGACGTGAAGGCTTTGAATGAAATCAAAGCATCTTTGGGATGGAGAGTGGTGTATTCATGGGTTGGTGATGATCCTTGTGGAGATGGAGACCTTCCTCCTTGGTCTGGTGTCACCTGCTCTACACAAGGTGACTATAGGGTCGTCACTGAGTTAGAGGTTTATGCGGTTTCGATTGTTGGACCCTTCCCCATTGCAGTTACGAACCTTCTGGATCTCACTAGACTGGATCTACATAACAACAAGCTCACTGGTCCAATCCCTCCCCAGATTGGACGCCTGAAACGGCTTAAAGTACTATACCTGAGGTGGAATAAACTGCAAGATGTGATTCCCCCTGAGATTGGGGAGCTCAAGAGACTAACGCATTTGTACTTGAGCTTCAATAGCTTTAAGGGAGAAATTCCAAAGGAATTGGCTGCTCTTCCGGAGCTTCGGTATCTATACCTTCAAGAAAACCGTCTCATTGGTAGAATTCCTGCTGAACTGGGGACGCTTCAAAACCTCCGCCATCTAGATGCTGGTAATAATCATTTGGTGGGAACTATAAGAGAGCTCATCCGTTTTGATGGTAGTTTCCCATCTCTTCGCAACCTGTACTTGAATAATAACTATTTGAGTGGAGGAATCCCTGCGCAGCTATCAAATCTTACAAGCTTAGAGATTGTGTACCTGTCTTACAACAAATTTATTGGAAACATTCCTTTTGCCATTGCTCATATTCCTAAGCTGACATTCCTGTATCTTGATCACAACCAATTCACTGGGAGAATCCCAGACGCATTCTACAAGCATCCATTCCTCAAAGAAATGTACATTGAAGGCAACATGTTCAAATCAGGCGTGAACCCAATTGGTACCCACAAAGTTCTAGAAGTTTCTGATGCTGATTTTGCTGTGTGGTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| LRR-like disease resistance protein | LRR-like disease resistance protein [Brassica rapa subsp. pekinensis]. | MASRCELLLICVLSLLFAVSYSKTLKRDVKALNEIKASLGWRVVYSWVGDDPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLKVLYLRWNKLQDVIPPEIGELKRLTHLYLSFNSFKGEIPKELAALPELRYLYLQENRLIGRIPAELGTLQNLRHLDAGNNHLVGTIRELIRFDGSFPSLRNLYLNNNYLSGGIPAQLSNLTSLEIVYLSYNKFIGNIPFAIAHIPKLTFLYLDHNQFTGRIPDAFYKHPFLKEMYIEGNMFKSGVNPIGTHKVLEVSDADFAVW |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420 | 1-304 | PTHR24420,FAMILY NOT NAMED | MASRCELLLICVLSLLFAVSYSKTLKRDVKALNEIKASLGWRVVYSWVGDDPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLKVLYLRWNKLQDVIPPEIGELKRLTHLYLSFNSFKGEIPKELAALPELRYLYLQENRLIGRIPAELGTLQNLRHLDAGNNHLVGTIRELIRFDGSFPSLRNLYLNNNYLSGGIPAQLSNLTSLEIVYLSYNKFIGNIPFAIAHIPKLTFLYLDHNQFTGRIPDAFYKHPFLKEMYIEGNMF |
| HMMPanther: PTHR24420:SF518 | 1-304 | PTHR24420:SF518 | MASRCELLLICVLSLLFAVSYSKTLKRDVKALNEIKASLGWRVVYSWVGDDPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLKVLYLRWNKLQDVIPPEIGELKRLTHLYLSFNSFKGEIPKELAALPELRYLYLQENRLIGRIPAELGTLQNLRHLDAGNNHLVGTIRELIRFDGSFPSLRNLYLNNNYLSGGIPAQLSNLTSLEIVYLSYNKFIGNIPFAIAHIPKLTFLYLDHNQFTGRIPDAFYKHPFLKEMYIEGNMF |
| superfamily: SSF52058 | 22-314 | SSF52058,LRR | SKTLKRDVKALNEIKASLGWRVVYSWVGDDPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLKVLYLRWNKLQDVIPPEIGELKRLTHLYLSFNSFKGEIPKELAALPELRYLYLQENRLIGRIPAELGTLQNLRHLDAGNNHLVGTIRELIRFDGSFPSLRNLYLNNNYLSGGIPAQLSNLTSLEIVYLSYNKFIGNIPFAIAHIPKLTFLYLDHNQFTGRIPDAFYKHPFLKEMYIEGNMFKSGVNPIGTH |
| HMMPfam: PF08263 IPR013210
|
26-67 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
KRDVKALNEIKASLGWRVVYSWVGDDPCGDGDLPPWSGVTCS |
| Gene3D: G3DSA:3.80.10.10 | 60-309 | G3DSA:3.80.10.10 | PWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLKVLYLRWNKLQDVIPPEIGELKRLTHLYLSFNSFKGEIPKELAALPELRYLYLQENRLIGRIPAELGTLQNLRHLDAGNNHLVGTIRELIRFDGSFPSLRNLYLNNNYLSGGIPAQLSNLTSLEIVYLSYNKFIGNIPFAIAHIPKLTFLYLDHNQFTGRIPDAFYKHPFLKEMYIEGNMFKSGVN |
| HMMPfam: PF00560 IPR001611
|
99-119 | LRR_1 Leucine-rich repeat
|
LTRLDLHNNKLTGPIPPQIGR |
| HMMPfam: PF12799 | 121-158 | LRR_4,Leucine Rich repeats (2 copies) | KRLKVLYLRWNKLQDVIPPEIGELKRLTHLYLSFNSFK |
| HMMPfam: PF12799 | 169-205 | LRR_4,Leucine Rich repeats (2 copies) | PELRYLYLQENRLIGRIPAELGTLQNLRHLDAGNNHL |
| HMMPfam: PF13855 | 220-279 | LRR_8,Leucine rich repeat | PSLRNLYLNNNYLSGGIPAQLSNLTSLEIVYLSYNKFIGNIPFAIAHIPKLTFLYLDHNQ |
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