PRGDB00047481 (NBS-LRR type disease resistance protein Hom-F)

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NBS-LRR type disease resistance protein Hom-F
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 38373626 (AY452687)
Gene Class NL
Domain Type LRR, NBS, LRR, LRR, Others
Gene Species Glycine max

Comment?

Glycine max cultivar Flambeau NBS-LRR type disease resistance protein Hom-F gene, complete cds.

DNA Sequence

ATGGCACTAGAATTGGTTGGTGGTGCTCTTCTTTCTGCTTTCCTTCAGGTTGCGTTTGAGAAGCTTGCTTCTCCTCAAGTTCTGGACTTCTTTCGTGGAAGAAAGCTTGATGAAAAGCTGCTCAACAACTTGGAAATCAAGCTGAACTCCATACAGGCTCTGGCTGATGATGCAGAACTAAAGCAGTTCAGAGATCCACCTGTCAGGAACTGGCTTCTTAAGGTCAAAGATGCTTTGTTTGACGCAGAGGATCTCTTGGATGAAATACAACATGAGATCTCCAAATGCCAGGTCGAAGCTGAAGCTGAAGCTGAGTCTCAAACCTGCACTTGCAAGGTACCAAATTTCTTAAAATCTTCTCCTGTTGGTTCCTTTAACAAGGAAATTAAATCAAGGATGGAACAGGTCCTTGAGGACCTTGAAAATCTTGCTAGCCAAAGTGGCTATCTAGGTTTGCAAAATGCAAGTGGTGTTGGATCAGGATTTGGTGGTGCAGTATCACTGCATTCAGAATCAACATCTTTGGTTGTTGAAAGTGTTATTTATGGCAGAGATGATGACAAAGAAATGATCTTTAATTGGCTCACATCTGACATTGACAATTGTAACAAACTATCAATACTTTCTATTGTGGGCATGGGTGGGTTGGGTAAGACCACACTTGCCCAACATGTATTCAATGACCCAAGGATAGAAAATAAATTTGATATCAAAGCTTGGGTCTGTGTTTCAGATGAATTTGATGTTTTCAATGTAACAAGAACAATTCTGGAGGCAGTCACTAAATCAACTGATGATAGTAGAAACCGAGAAACGGTTCAGGGAAGGTTGAGAGAAAAATTGACAGGAAATAAATTTTTTCTTGTTTTGGATGATGTTTGGAACAGAAATCAAAAGGAATGGAAAGATTTGCAAACTCCTCTTAATTATGGGGCTTCAGGGAGTAAAATTGTTGTCACTACACGTGACAAGAAAGTTGCTTCAATAGTGGGATCAAATAAAACACATTGCTTAGAGCTGTTGCAAGATGATCATTGCTGGCGATTGTTCACTAAACATGCATTCCGAGATGATAGTCATCAACCAAATCCAGACTTCAAGGAGATTGGTACGAAGATAGTAGAAAAATGTAAAGGACTGCCTCTGGCCTTGACAACAATTGGAAGTCTATTACACCAAAAATCATCTATTTCAGAATGGGAAGGCATATTGAAAAGCGAGATATGGGAATTTTCAGAAGAGGATAGCTCTATTGTCCCTGCTTTAGCACTAAGCTATCACCACCTTCCTTCCCATCTCAAGAGATGTTTTGCTTATTGCGCCTTATTCCCCAAAGATTACAGGTTTGACGAGGAGGGTTTAATTCAGCTGTGGATGGCGGAAAACTTTTTACAATGTCATCAACAGAGTAGGAGTCCAGAAAAAGTCGGTGAACAATACTTCAACGATCTTTTGTCAAGGTCCTTCTTTCAACAATCAAGCACCGTAGAGAGAACACCTTTTGTCATGCATGACCTTCTCAATGATTTGGCAAAATATGTTTGTGGGGACATCTGCTTCAGGTTGGAAAATGATCAAGCAACAAATATACCGAAGACAACCCGTCATTTTTCAGTTGCAAGCGATCACGTTACATGCTTTGATGGGTTTCGAACTTTATACAATGCTGAAAGGTTACGCACATTTATGTCATTAAGTGAGGAAATGAGTTTTCGTAACTACAATCTTTGGTATTGCAAGATGTCAACACGTGAATTATTTTCCAAGTTTAAGTTCTTACGTGTCTTATCTCTGTCTGGTTATTCTAACCTAACAAAGGTGCCTAACTCTGTGGGTAATCTTAAATATCTCAGTTCGTTAGACTTATCCCATACTGAAATAGTAAAACTACCTGAATCAATATGTTCACTCTACAACTTGCAAATACTGAAGCTAAATGGTTGTGAACATTTGAAGGAGCTGCCCTCAAATTTGCATAAACTCACTGATTTGCATCGCCTTGAATTAATAGATACTGAAGTGAGAAAGGTACCAGCACATTTGGGAAAACTGAAGTATCTTCAAGTATTAATGAGTTCGTTTAATGTTGGCAAAAGTAGGGAGTTCAGTATCCAGCAGCTAGGAGAACTCAATCTTCATGGAAGTCTATCAATAAGGCAACTGCAGAATGTTGAGAATCCATCAGATGCATTAGCGGTGGATTTAAAAAATAAAACACACCTTGTCGAGCTAGAGTTAGAATGGGATTCAGACTGGAACCCTGATGATTCAACAAAAGAAAGGGATGTAATCGAGAATCTACAGCCTTCCAAACACTTGGAGAAGTTGACGATGAGCAACTATGGGGGTAAACAATTTCCAAGGTGGTTATTCAACAATTCATTATTGCGTGTGGTATCCTTAACCCTGAAGAACTGTAAAGGTTTCCTATGTTTGCCTCCCCTTGGACGTTTGCCATCTCTGAAGGAGCTTTCAATTGAAGGGCTTGATGGGATTGTGAGTATTAATGCTGATTTTTTGGGGAGTAGCTCTTGTTCATTTACATCCTTGGAATCTTTGGAGTTCTCCGATATGAAGGAATGGGAAGAATGGGAATGTAAAGGTGTGACAGGTGCTTTTCCACGTCTTCGACGTCTTTCTATAGAGCGTTGTCCCAAGCTGAAAGGGCACTTGCCAGAGCAACTATGTCATTTAAATTCTCTAAAGATTTCTGGGTGGGACTCTCTAACGACTATTCCGCTAGATATCTTCCCAATACTCAAGGAGCTTCAGATCTGGGAGTGTCCTAATCTACAGAGGATTTCACAGGGGCAGGCTCTTAATCATCTCGAGACTCTGAGTATGAGAGAGTGCCCCCAATTAGAATCATTGCCTGAAGGAATGCATGTCCTCCTTCCATCTCTTGATTCTCTGTGGATAAAGGATTGTCCAAAAGTTGAAATGTTTCCCGAAGGAGGTTTGCCATCAAATTTAAAAAGTATGGGTCTCTATGGTGGTAGTTACAAACTTATCTCCTTATTGAAAAGTGCCTTGGGAGGCAATCACTCTCTAGAAAGGTTAGTTATTGGAGGAGTGGATGTTGAGTGTCTTCCTGACGAAGGTGTACTGCCACACTCTCTTGTTAATCTATGGATAAGGGAGTGTGGAGATCTAAAAAGACTGGACTACAGAGGTCTCTGCCACCTCTCCTCTCTCAAGACATTGACTCTTTGGGACTGCCCCAGGCTCGAATGCTTACCAGAGGAGGGTCTGCCCAAATCCATTTCAACTTTGGGAATTCTCAATTGTCCGTTGCTCAAACAACGTTGCCGGGAACCCGAAGGCGAAGACTGGCCAAAGATTGCTCACATTGAAGAGGTGTTTATATGGAAGTGA


Protein sequences

Name Description Sequence
NBS-LRR type disease resistance protein Hom-F NBS-LRR type disease resistance protein Hom-F [Glycine max].

MALELVGGALLSAFLQVAFEKLASPQVLDFFRGRKLDEKLLNNLEIKLNSIQALADDAELKQFRDPPVRNWLLKVKDALFDAEDLLDEIQHEISKCQVEAEAEAESQTCTCKVPNFLKSSPVGSFNKEIKSRMEQVLEDLENLASQSGYLGLQNASGVGSGFGGAVSLHSESTSLVVESVIYGRDDDKEMIFNWLTSDIDNCNKLSILSIVGMGGLGKTTLAQHVFNDPRIENKFDIKAWVCVSDEFDVFNVTRTILEAVTKSTDDSRNRETVQGRLREKLTGNKFFLVLDDVWNRNQKEWKDLQTPLNYGASGSKIVVTTRDKKVASIVGSNKTHCLELLQDDHCWRLFTKHAFRDDSHQPNPDFKEIGTKIVEKCKGLPLALTTIGSLLHQKSSISEWEGILKSEIWEFSEEDSSIVPALALSYHHLPSHLKRCFAYCALFPKDYRFDEEGLIQLWMAENFLQCHQQSRSPEKVGEQYFNDLLSRSFFQQSSTVERTPFVMHDLLNDLAKYVCGDICFRLENDQATNIPKTTRHFSVASDHVTCFDGFRTLYNAERLRTFMSLSEEMSFRNYNLWYCKMSTRELFSKFKFLRVLSLSGYSNLTKVPNSVGNLKYLSSLDLSHTEIVKLPESICSLYNLQILKLNGCEHLKELPSNLHKLTDLHRLELIDTEVRKVPAHLGKLKYLQVLMSSFNVGKSREFSIQQLGELNLHGSLSIRQLQNVENPSDALAVDLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLTMSNYGGKQFPRWLFNNSLLRVVSLTLKNCKGFLCLPPLGRLPSLKELSIEGLDGIVSINADFLGSSSCSFTSLESLEFSDMKEWEEWECKGVTGAFPRLRRLSIERCPKLKGHLPEQLCHLNSLKISGWDSLTTIPLDIFPILKELQIWECPNLQRISQGQALNHLETLSMRECPQLESLPEGMHVLLPSLDSLWIKDCPKVEMFPEGGLPSNLKSMGLYGGSYKLISLLKSALGGNHSLERLVIGGVDVECLPDEGVLPHSLVNLWIRECGDLKRLDYRGLCHLSSLKTLTLWDCPRLECLPEEGLPKSISTLGILNCPLLKQRCREPEGEDWPKIAHIEEVFIWK

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF236
9-976 PTHR23155:SF236,DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS)

ALLSAFLQVAFEKLASPQVLDFFRGRKLDEKLLNNLEIKLNSIQALADDAELKQFRDPPVRNWLLKVKDALFDAEDLLDEIQHEISKCQVEAEAEAESQTCTCKVPNFLKSSPVGSFNKEIKSRMEQVLEDLENLASQSGYLGLQNASGVGSGFGGAVSLHSESTSLVVESVIYGRDDDKEMIFNWLTSDIDNCNKLSILSIVGMGGLGKTTLAQHVFNDPRIENKFDIKAWVCVSDEFDVFNVTRTILEAVTKSTDDSRNRETVQGRLREKLTGNKFFLVLDDVWNRNQKEWKDLQTPLNYGASGSKIVVTTRDKKVASIVGSNKTHCLELLQDDHCWRLFTKHAFRDDSHQPNPDFKEIGTKIVEKCKGLPLALTTIGSLLHQKSSISEWEGILKSEIWEFSEEDSSIVPALALSYHHLPSHLKRCFAYCALFPKDYRFDEEGLIQLWMAENFLQCHQQSRSPEKVGEQYFNDLLSRSFFQQSSTVERTPFVMHDLLNDLAKYVCGDICFRLENDQATNIPKTTRHFSVASDHVTCFDGFRTLYNAERLRTFMSLSEEMSFRNYNLWYCKMSTRELFSKFKFLRVLSLSGYSNLTKVPNSVGNLKYLSSLDLSHTEIVKLPESICSLYNLQILKLNGCEHLKELPSNLHKLTDLHRLELIDTEVRKVPAHLGKLKYLQVLMSSFNVGKSREFSIQQLGELNLHGSLSIRQLQNVENPSDALAVDLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLTMSNYGGKQFPRWLFNNSLLRVVSLTLKNCKGFLCLPPLGRLPSLKELSIEGLDGIVSINADFLGSSSCSFTSLESLEFSDMKEWEEWECKGVTGAFPRLRRLSIERCPKLKGHLPEQLCHLNSLKISGWDSLTTIPLDIFPILKELQIWECPNLQRISQGQALNHLETLSMRECPQLESLPEGMHVLLPSLDSLWIKDC

HMMPanther: PTHR23155
9-976 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

ALLSAFLQVAFEKLASPQVLDFFRGRKLDEKLLNNLEIKLNSIQALADDAELKQFRDPPVRNWLLKVKDALFDAEDLLDEIQHEISKCQVEAEAEAESQTCTCKVPNFLKSSPVGSFNKEIKSRMEQVLEDLENLASQSGYLGLQNASGVGSGFGGAVSLHSESTSLVVESVIYGRDDDKEMIFNWLTSDIDNCNKLSILSIVGMGGLGKTTLAQHVFNDPRIENKFDIKAWVCVSDEFDVFNVTRTILEAVTKSTDDSRNRETVQGRLREKLTGNKFFLVLDDVWNRNQKEWKDLQTPLNYGASGSKIVVTTRDKKVASIVGSNKTHCLELLQDDHCWRLFTKHAFRDDSHQPNPDFKEIGTKIVEKCKGLPLALTTIGSLLHQKSSISEWEGILKSEIWEFSEEDSSIVPALALSYHHLPSHLKRCFAYCALFPKDYRFDEEGLIQLWMAENFLQCHQQSRSPEKVGEQYFNDLLSRSFFQQSSTVERTPFVMHDLLNDLAKYVCGDICFRLENDQATNIPKTTRHFSVASDHVTCFDGFRTLYNAERLRTFMSLSEEMSFRNYNLWYCKMSTRELFSKFKFLRVLSLSGYSNLTKVPNSVGNLKYLSSLDLSHTEIVKLPESICSLYNLQILKLNGCEHLKELPSNLHKLTDLHRLELIDTEVRKVPAHLGKLKYLQVLMSSFNVGKSREFSIQQLGELNLHGSLSIRQLQNVENPSDALAVDLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLTMSNYGGKQFPRWLFNNSLLRVVSLTLKNCKGFLCLPPLGRLPSLKELSIEGLDGIVSINADFLGSSSCSFTSLESLEFSDMKEWEEWECKGVTGAFPRLRRLSIERCPKLKGHLPEQLCHLNSLKISGWDSLTTIPLDIFPILKELQIWECPNLQRISQGQALNHLETLSMRECPQLESLPEGMHVLLPSLDSLWIKDC

superfamily: SSF52540
174-414 SSF52540

SLVVESVIYGRDDDKEMIFNWLTSDIDNCNKLSILSIVGMGGLGKTTLAQHVFNDPRIENKFDIKAWVCVSDEFDVFNVTRTILEAVTKSTDDSRNRETVQGRLREKLTGNKFFLVLDDVWNRNQKEWKDLQTPLNYGASGSKIVVTTRDKKVASIVGSNKTHCLELLQDDHCWRLFTKHAFRDDSHQPNPDFKEIGTKIVEKCKGLPLALTTIGSLLHQKSSISEWEGILKSEIWEFSEE

Gene3D: G3DSA:3.40.50.300
183-328 G3DSA:3.40.50.300

GRDDDKEMIFNWLTSDIDNCNKLSILSIVGMGGLGKTTLAQHVFNDPRIENKFDIKAWVCVSDEFDVFNVTRTILEAVTKSTDDSRNRETVQGRLREKLTGNKFFLVLDDVWNRNQKEWKDLQTPLNYGASGSKIVVTTRDKKVAS

HMMPfam: PF00931
IPR002182
185-467 NB-ARC,NBS
NB-ARC

DDDKEMIFNWLTSDIDNCNKLSILSIVGMGGLGKTTLAQHVFNDPRIENKFDIKAWVCVSDEFDVFNVTRTILEAVTKSTDDSRNRETVQGRLREKLTGNKFFLVLDDVWNRNQKEWKDLQTPLNYGASGSKIVVTTRDKKVASIVGSNKTHCLELLQDDHCWRLFTKHAFRDDSHQPNPDFKEIGTKIVEKCKGLPLALTTIGSLLHQKSSISEWEGILKSEIWEFSEEDSSIVPALALSYHHLPSHLKRCFAYCALFPKDYRFDEEGLIQLWMAENFLQCH

FPrintScan: PR00364
IPR000767
207-222 DISEASERSIST
Disease resistance protein

ILSIVGMGGLGKTTLA

FPrintScan: PR00364
IPR000767
280-294 DISEASERSIST
Disease resistance protein

KLTGNKFFLVLDDVW

FPrintScan: PR00364
IPR000767
377-391 DISEASERSIST
Disease resistance protein

CKGLPLALTTIGSLL

superfamily: SSF52058
502-929 SSF52058,LRR

VMHDLLNDLAKYVCGDICFRLENDQATNIPKTTRHFSVASDHVTCFDGFRTLYNAERLRTFMSLSEEMSFRNYNLWYCKMSTRELFSKFKFLRVLSLSGYSNLTKVPNSVGNLKYLSSLDLSHTEIVKLPESICSLYNLQILKLNGCEHLKELPSNLHKLTDLHRLELIDTEVRKVPAHLGKLKYLQVLMSSFNVGKSREFSIQQLGELNLHGSLSIRQLQNVENPSDALAVDLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLTMSNYGGKQFPRWLFNNSLLRVVSLTLKNCKGFLCLPPLGRLPSLKELSIEGLDGIVSINADFLGSSSCSFTSLESLEFSDMKEWEEWECKGVTGAFPRLRRLSIERCPKLKGHLPEQLCHLNSLKISGWDSLTTIPLDIFPILKELQIWECP

Gene3D: G3DSA:3.80.10.10
580-714 G3DSA:3.80.10.10

KMSTRELFSKFKFLRVLSLSGYSNLTKVPNSVGNLKYLSSLDLSHTEIVKLPESICSLYNLQILKLNGCEHLKELPSNLHKLTDLHRLELIDTEVRKVPAHLGKLKYLQVLMSSFNVGKSREFSIQQLGELNLHG

FPrintScan: PR00364
IPR000767
612-628 DISEASERSIST
Disease resistance protein

GNLKYLSSLDLSHTEIV

HMMPfam: PF00560
IPR001611
639-661 LRR_1
Leucine-rich repeat

NLQILKLNGCEHLKELPSNLHKL

Gene3D: G3DSA:3.80.10.10
734-904 G3DSA:3.80.10.10

DLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLTMSNYGGKQFPRWLFNNSLLRVVSLTLKNCKGFLCLPPLGRLPSLKELSIEGLDGIVSINADFLGSSSCSFTSLESLEFSDMKEWEEWECKGVTGAFPRLRRLSIERCPKLKGHLPEQLCHLNSLKIS

Gene3D: G3DSA:3.80.10.10
908-1086 G3DSA:3.80.10.10

SLTTIPLDIFPILKELQIWECPNLQRISQGQALNHLETLSMRECPQLESLPEGMHVLLPSLDSLWIKDCPKVEMFPEGGLPSNLKSMGLYGGSYKLISLLKSALGGNHSLERLVIGGVDVECLPDEGVLPHSLVNLWIRECGDLKRLDYRGLCHLSSLKTLTLWDCPRLECLPEEGLPK

superfamily: SSF52058
908-1116 SSF52058,LRR

SLTTIPLDIFPILKELQIWECPNLQRISQGQALNHLETLSMRECPQLESLPEGMHVLLPSLDSLWIKDCPKVEMFPEGGLPSNLKSMGLYGGSYKLISLLKSALGGNHSLERLVIGGVDVECLPDEGVLPHSLVNLWIRECGDLKRLDYRGLCHLSSLKTLTLWDCPRLECLPEEGLPKSISTLGILNCPLLKQRCREPEGEDWPKIAH


List of References

Tom Ashfield, Laura E Ong, Kan Nobuta, Christopher M Schneider, Roger W Innes
Convergent evolution of disease resistance gene specificity in two flowering plant families.
Plant Cell: 2004, 16(2);309-18
PubMed:14742871 WorldCat.org DOI (P p)





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Blast

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