PRGDB00047484 (NBS-LRR type disease resistance protein RPG1-B)
| NBS-LRR type disease resistance protein RPG1-B | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 38373620 (AY452684) |
| Gene Class | NL |
| Domain Type | LRR, NBS, LRR, LRR, Others |
| Gene Species | Glycine max |
DNA Sequence
ATGGCACTAGAATTGGTTGGTGGTGCTCTTCTTTCTGCTTTCCTTCAGGTTGCGTTTGAGAAGCTTGCTTCTCCTCAAGTTCTGGACTTCTTTCGTGGAAGAAAGCTTGATCAAAAGCTGCTCAACAACTTGGAAATCAAGCTGAACTCCATACAGGCTCTGGCTAATGATGCAGAACTAAAGCAGTTCAGAGATCCACTTGTCAGAAACTGGCTTCTTAAGGTCAAAGATGCTGTGTTTGACGCAGAGGATATCTTGGATGAAATACAACATGAGATCTCCAAATGCCAGGTCGAAGCTGAAGCTGAAGCTGAGTCTCAAACCTGCACTTGCAAGGTACCAAATTTCTTCAAATCTTCTCCTGCTAGTTCCTTTAACAGGGAAATTAAATCCAGGATGGAAGAAATCCTTGATAGATTAGATCTTCTCTCAAGCCAAAAGGATGATCTAGGCTTGAAAAATTCTAGTGGTGTTGGCGTTGGATCAGAATTGGGTAGTGCAGTACCACAGATATCACAATCAACATCTTCAGTTGTTGAAAGTGATATTTATGGCAGAGATAAAGACAAAAAAATGATTTTTGATTGGCTGACATCTGACAATGGCAATCCTAACCAGCCATCGATACTTTCTATTGTGGGCATGGGTGGGATGGGTAAGACCACACTTGCTCAACATGTATTCAATGACCCTAGGATCGAGGAGGCTAGATTTGATGTCAAAGCTTGGGTCTGTGTTTCAGATGATTTTGATGCTTTCAGGGTAACAAGAACAATTCTTGAGGCCATCACTAAATCGACTGATGATAGTAGAGACCTAGAGATGGTTCACGGAAGATTGAAAGAAAAATTGACGGGGAAGAGATTTCTTCTTGTTTTGGATGACGTTTGGAACGAAAACCGACTTAAATGGGAAGCTGTGCTAAAACATCTTGGTTTTGGGGCTCAGGGGAGTAGAATTATTGCCACCACACGTAGTAAGGAAGTTGCTTCTACCATGAGGTCAAAAGAACACCTCCTGGAGCAATTACAAGAAGATCATTGCTGGAAGTTGTTTGCTAAACATGCATTCCAAGATGATAATATTCAACCAAATCCAGATTGCAAGGAGATTGGTATGAAGATAGTTGAAAAATGTAAAGGACTTCCTCTGGCCTTGAAAACAATGGGAAGTCTATTACACAACAAGTCATCTGTTACGGAATGGAAAAGCATATTGCAGAGCGAGATATGGGAATTTTCAACAGAGCGTAGTGATATTGTACCTGCTTTAGCACTAAGCTATCACCATCTTCCTTCTCATCTCAAGAGATGTTTTGCTTATTGTGCCTTATTCCCCAAAGATTATGAGTTTGATAAGGAGTGCTTAATACAATTGTGGATGGCTGAAAAATTTCTACAATGTTCTCAACAGGGTAAGAGTCCAGGAGAAGTTGGTGAACAATACTTCAATGATCTATTATCAAGGTGCTTCTTTCAACAATCAAGCAACACAGAGAGAACAGATTTTGTCATGCATGACCTTCTCAACGATTTGGCAAGATTTATTTGTGGGGACATTTGTTTCAGATTGGATGGGAATCAAACAAAAGGTACACCAAAAGCAACCCGTCATTTTTTAATTGACGTTAAATGTTTTGATGGGTTTGGAACTCTATGTGACACAAAAAAGTTACGTACTTATATGCCAACAAGTTACAAATATTGGGATTGCGAGATGTCAATACACGAATTGTTCTCCAAGTTTAATTACTTACGTGTCTTATCTCTGTTTGATTGTCATGACCTAAGAGAGGTGCCTGACTCTGTGGGTAATCTCAAATATCTCCGTTCGTTAGACTTATCCAATACTAAAATAGAAAAACTACCTGAATCAATATGTTCACTCTACAACTTGCAAATACTGAAGCTAAATGGTTGTAGACATTTGAAGGAGCTGCCCTCAAATTTGCATAAACTCACTGATTTGCATCGGCTTGAATTAATAGAAACTGGAGTGAGAAAGGTACCAGCACATTTGGGAAAACTGGAGTATCTTCAAGTATTAATGAGTTCGTTTAATGTTGGCAAAAGTAGGGAGTTCAGTATCCAGCAGTTAGGAGAACTCAATCTTCATGGAAGTCTATCAATAAGGCAACTGCAGAATGTTGAGAATCCATCAGATGCATTAGCGGTGGATTTAAAAAATAAAACACACCTTGTCGAGCTAGAGTTAGAATGGGATTCAGACTGGAACCCTGATGATTCAACAAAAGAAAGGGATGTAATCGAGAATCTACAGCCTTCCAAACACTTGGAGAAGTTGAGGATGAGGAACTATGGGGGTACTCAATTTCCAAGGTGGTTATTCAACAATTCATCATGTAGTGTGGTGTCCTTAACCTTGAAGAACTGTAAATATTGCCTATGTTTGCCTCCCCTTGGACTTTTGCCATCTCTGAAGGAACTTTCAATTAAAGGGCTTGATGGGATCGTGAGTATCAATGCTGATTTTTTCGGGAGTAGCTCTTGTTCATTTACATCCTTGAAATCTTTGGAGTTCTACCATATGAAGGAATGGGAAGAATGGGAATGTAAAGGTGTGACAGGTGCTTTTCCACGTCTTCAACGTCTTTCTATAGAGCGTTGTCCCAAGCTGAAAGGGCACTTGCCAGAGCAACTATGTCATTTAAATTCTCTAAAGATTTCTGGGTGTGAACAACTTGTACCTTCTGCTCTCAGTGCCCCTGATATTCATAAATTATACCTAGGAGACTGTGGAGAGCTGCAAATTGATCATGGGACAACTTTGAAAGAGCTTACCATTGAAGGTCACAACGTGGAGGCAGCCTTATTCGAAGAGATTGGGCGCAATTACTCTTGTTCAAATAACAATATTCCCATGCACAGTTGCTATGATTTCCTTGTAAGCTTGCGCATCAAAGGTGGCTGCGACTCTTTAACGACCTTTCCGCTAGATATGTTCACAATACTCAGGGAACTTTGTATCTGGAAGTGTCCTAATCTACGGAGGATTTCACAAGGGCAGGCTCATAATCATCTCCAGACTCTGGATATCAAAGAGTGCCCCCAATTAGAATCATTGCCTGAAGGAATGCATGTCCTCCTTCCATCTCTTGATTCTCTGTGCATAGATGATTGTCCAAAAGTTGAAATGTTTCCCGAAGGAGGTTTGCCATCAAATTTAAAAGAAATGGGTCTCTTTGGTGGTAGTTACAAACTTATGTCCTTATTGAAAAGTGCCTTGGGAGGCAATCACTCTCTAGAACGGTTAGTTATTGGAAAAGTGGATTTTGAGTGTCTTCCTGAGGAAGGTGTACTGCCACACTCTCTTGTTTCTCTACAGATCAATAGCTGTGGAGATCTTAAAAGACTGGACTACAAAGGTATCTGCCACCTCTCCTCTCTCAAGGAATTGAGTCTTGAAGACTGCCCCAGGCTCCAATGCTTACCAGAGGAGGGTCTGCCCAAATCCATTTCATCTTTGTGGATTTGGGGGGACTGTCAGTTGCTCAAAGAACGTTGCCGGGAACCCGAAGGCGAAGACTGGCCAAAGATTGCTCACTTTTGCCCGTTGCTCAATCAACGTTGCCGGGAACCCGGAGGCGAAGACTGGCCAAAGATTGCTGACATTGAAAACGTGTATATAAGGTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| NBS-LRR type disease resistance protein RPG1-B | NBS-LRR type disease resistance protein RPG1-B [Glycine max]. | MALELVGGALLSAFLQVAFEKLASPQVLDFFRGRKLDQKLLNNLEIKLNSIQALANDAELKQFRDPLVRNWLLKVKDAVFDAEDILDEIQHEISKCQVEAEAEAESQTCTCKVPNFFKSSPASSFNREIKSRMEEILDRLDLLSSQKDDLGLKNSSGVGVGSELGSAVPQISQSTSSVVESDIYGRDKDKKMIFDWLTSDNGNPNQPSILSIVGMGGMGKTTLAQHVFNDPRIEEARFDVKAWVCVSDDFDAFRVTRTILEAITKSTDDSRDLEMVHGRLKEKLTGKRFLLVLDDVWNENRLKWEAVLKHLGFGAQGSRIIATTRSKEVASTMRSKEHLLEQLQEDHCWKLFAKHAFQDDNIQPNPDCKEIGMKIVEKCKGLPLALKTMGSLLHNKSSVTEWKSILQSEIWEFSTERSDIVPALALSYHHLPSHLKRCFAYCALFPKDYEFDKECLIQLWMAEKFLQCSQQGKSPGEVGEQYFNDLLSRCFFQQSSNTERTDFVMHDLLNDLARFICGDICFRLDGNQTKGTPKATRHFLIDVKCFDGFGTLCDTKKLRTYMPTSYKYWDCEMSIHELFSKFNYLRVLSLFDCHDLREVPDSVGNLKYLRSLDLSNTKIEKLPESICSLYNLQILKLNGCRHLKELPSNLHKLTDLHRLELIETGVRKVPAHLGKLEYLQVLMSSFNVGKSREFSIQQLGELNLHGSLSIRQLQNVENPSDALAVDLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLRMRNYGGTQFPRWLFNNSSCSVVSLTLKNCKYCLCLPPLGLLPSLKELSIKGLDGIVSINADFFGSSSCSFTSLKSLEFYHMKEWEEWECKGVTGAFPRLQRLSIERCPKLKGHLPEQLCHLNSLKISGCEQLVPSALSAPDIHKLYLGDCGELQIDHGTTLKELTIEGHNVEAALFEEIGRNYSCSNNNIPMHSCYDFLVSLRIKGGCDSLTTFPLDMFTILRELCIWKCPNLRRISQGQAHNHLQTLDIKECPQLESLPEGMHVLLPSLDSLCIDDCPKVEMFPEGGLPSNLKEMGLFGGSYKLMSLLKSALGGNHSLERLVIGKVDFECLPEEGVLPHSLVSLQINSCGDLKRLDYKGICHLSSLKELSLEDCPRLQCLPEEGLPKSISSLWIWGDCQLLKERCREPEGEDWPKIAHFCPLLNQRCREPGGEDWPKIADIENVYIR |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155:SF121 | 6-901 | PTHR23155:SF121,SUBFAMILY NOT NAMED | VGGALLSAFLQVAFEKLASPQVLDFFRGRKLDQKLLNNLEIKLNSIQALANDAELKQFRDPLVRNWLLKVKDAVFDAEDILDEIQHEISKCQVEAEAEAESQTCTCKVPNFFKSSPASSFNREIKSRMEEILDRLDLLSSQKDDLGLKNSSGVGVGSELGSAVPQISQSTSSVVESDIYGRDKDKKMIFDWLTSDNGNPNQPSILSIVGMGGMGKTTLAQHVFNDPRIEEARFDVKAWVCVSDDFDAFRVTRTILEAITKSTDDSRDLEMVHGRLKEKLTGKRFLLVLDDVWNENRLKWEAVLKHLGFGAQGSRIIATTRSKEVASTMRSKEHLLEQLQEDHCWKLFAKHAFQDDNIQPNPDCKEIGMKIVEKCKGLPLALKTMGSLLHNKSSVTEWKSILQSEIWEFSTERSDIVPALALSYHHLPSHLKRCFAYCALFPKDYEFDKECLIQLWMAEKFLQCSQQGKSPGEVGEQYFNDLLSRCFFQQSSNTERTDFVMHDLLNDLARFICGDICFRLDGNQTKGTPKATRHFLIDVKCFDGFGTLCDTKKLRTYMPTSYKYWDCEMSIHELFSKFNYLRVLSLFDCHDLREVPDSVGNLKYLRSLDLSNTKIEKLPESICSLYNLQILKLNGCRHLKELPSNLHKLTDLHRLELIETGVRKVPAHLGKLEYLQVLMSSFNVGKSREFSIQQLGELNLHGSLSIRQLQNVENPSDALAVDLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLRMRNYGGTQFPRWLFNNSSCSVVSLTLKNCKYCLCLPPLGLLPSLKELSIKGLDGIVSINADFFGSSSCSFTSLKSLEFYHMKEWEEWECKGVTGAFPRLQRLSIERCPKLKGHLPEQLCHLNSLKISGCEQL |
| HMMPanther: PTHR23155 | 6-901 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | VGGALLSAFLQVAFEKLASPQVLDFFRGRKLDQKLLNNLEIKLNSIQALANDAELKQFRDPLVRNWLLKVKDAVFDAEDILDEIQHEISKCQVEAEAEAESQTCTCKVPNFFKSSPASSFNREIKSRMEEILDRLDLLSSQKDDLGLKNSSGVGVGSELGSAVPQISQSTSSVVESDIYGRDKDKKMIFDWLTSDNGNPNQPSILSIVGMGGMGKTTLAQHVFNDPRIEEARFDVKAWVCVSDDFDAFRVTRTILEAITKSTDDSRDLEMVHGRLKEKLTGKRFLLVLDDVWNENRLKWEAVLKHLGFGAQGSRIIATTRSKEVASTMRSKEHLLEQLQEDHCWKLFAKHAFQDDNIQPNPDCKEIGMKIVEKCKGLPLALKTMGSLLHNKSSVTEWKSILQSEIWEFSTERSDIVPALALSYHHLPSHLKRCFAYCALFPKDYEFDKECLIQLWMAEKFLQCSQQGKSPGEVGEQYFNDLLSRCFFQQSSNTERTDFVMHDLLNDLARFICGDICFRLDGNQTKGTPKATRHFLIDVKCFDGFGTLCDTKKLRTYMPTSYKYWDCEMSIHELFSKFNYLRVLSLFDCHDLREVPDSVGNLKYLRSLDLSNTKIEKLPESICSLYNLQILKLNGCRHLKELPSNLHKLTDLHRLELIETGVRKVPAHLGKLEYLQVLMSSFNVGKSREFSIQQLGELNLHGSLSIRQLQNVENPSDALAVDLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLRMRNYGGTQFPRWLFNNSSCSVVSLTLKNCKYCLCLPPLGLLPSLKELSIKGLDGIVSINADFFGSSSCSFTSLKSLEFYHMKEWEEWECKGVTGAFPRLQRLSIERCPKLKGHLPEQLCHLNSLKISGCEQL |
| ProfileScan: PS51450 IPR001611
|
40-61 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
LLNNLEIKLNSIQALANDAELK |
| superfamily: SSF52540 | 166-416 | SSF52540 | SAVPQISQSTSSVVESDIYGRDKDKKMIFDWLTSDNGNPNQPSILSIVGMGGMGKTTLAQHVFNDPRIEEARFDVKAWVCVSDDFDAFRVTRTILEAITKSTDDSRDLEMVHGRLKEKLTGKRFLLVLDDVWNENRLKWEAVLKHLGFGAQGSRIIATTRSKEVASTMRSKEHLLEQLQEDHCWKLFAKHAFQDDNIQPNPDCKEIGMKIVEKCKGLPLALKTMGSLLHNKSSVTEWKSILQSEIWEFSTE |
| Gene3D: G3DSA:3.40.50.300 | 180-326 | G3DSA:3.40.50.300 | ESDIYGRDKDKKMIFDWLTSDNGNPNQPSILSIVGMGGMGKTTLAQHVFNDPRIEEARFDVKAWVCVSDDFDAFRVTRTILEAITKSTDDSRDLEMVHGRLKEKLTGKRFLLVLDDVWNENRLKWEAVLKHLGFGAQGSRIIATTRS |
| HMMPfam: PF00931 IPR002182
|
187-470 | NB-ARC,NBS NB-ARC
|
DKDKKMIFDWLTSDNGNPNQPSILSIVGMGGMGKTTLAQHVFNDPRIEEARFDVKAWVCVSDDFDAFRVTRTILEAITKSTDDSRDLEMVHGRLKEKLTGKRFLLVLDDVWNENRLKWEAVLKHLGFGAQGSRIIATTRSKEVASTMRSKEHLLEQLQEDHCWKLFAKHAFQDDNIQPNPDCKEIGMKIVEKCKGLPLALKTMGSLLHNKSSVTEWKSILQSEIWEFSTERSDIVPALALSYHHLPSHLKRCFAYCALFPKDYEFDKECLIQLWMAEKFLQCSQ |
| FPrintScan: PR00364 IPR000767
|
209-224 | DISEASERSIST Disease resistance protein
|
ILSIVGMGGMGKTTLA |
| FPrintScan: PR00364 IPR000767
|
283-297 | DISEASERSIST Disease resistance protein
|
KLTGKRFLLVLDDVW |
| FPrintScan: PR00364 IPR000767
|
379-393 | DISEASERSIST Disease resistance protein
|
CKGLPLALKTMGSLL |
| superfamily: SSF52058 | 504-895 | SSF52058,LRR | VMHDLLNDLARFICGDICFRLDGNQTKGTPKATRHFLIDVKCFDGFGTLCDTKKLRTYMPTSYKYWDCEMSIHELFSKFNYLRVLSLFDCHDLREVPDSVGNLKYLRSLDLSNTKIEKLPESICSLYNLQILKLNGCRHLKELPSNLHKLTDLHRLELIETGVRKVPAHLGKLEYLQVLMSSFNVGKSREFSIQQLGELNLHGSLSIRQLQNVENPSDALAVDLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLRMRNYGGTQFPRWLFNNSSCSVVSLTLKNCKYCLCLPPLGLLPSLKELSIKGLDGIVSINADFFGSSSCSFTSLKSLEFYHMKEWEEWECKGVTGAFPRLQRLSIERCPKLKGHLPEQLCHLNSLKI |
| Gene3D: G3DSA:3.80.10.10 | 576-706 | G3DSA:3.80.10.10 | HELFSKFNYLRVLSLFDCHDLREVPDSVGNLKYLRSLDLSNTKIEKLPESICSLYNLQILKLNGCRHLKELPSNLHKLTDLHRLELIETGVRKVPAHLGKLEYLQVLMSSFNVGKSREFSIQQLGELNLHG |
| FPrintScan: PR00364 IPR000767
|
604-620 | DISEASERSIST Disease resistance protein
|
GNLKYLRSLDLSNTKIE |
| ProfileScan: PS51450 IPR001611
|
608-629 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
YLRSLDLSNTKIEKLPESICSL |
| HMMPfam: PF00560 IPR001611
|
609-629 | LRR_1 Leucine-rich repeat
|
LRSLDLSNTKIEKLPESICSL |
| HMMPfam: PF00560 IPR001611
|
631-653 | LRR_1 Leucine-rich repeat
|
NLQILKLNGCRHLKELPSNLHKL |
| ProfileScan: PS51450 IPR001611
|
631-654 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLQILKLNGCRHLKELPSNLHKLT |
| Gene3D: G3DSA:3.80.10.10 | 726-960 | G3DSA:3.80.10.10 | DLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLRMRNYGGTQFPRWLFNNSSCSVVSLTLKNCKYCLCLPPLGLLPSLKELSIKGLDGIVSINADFFGSSSCSFTSLKSLEFYHMKEWEEWECKGVTGAFPRLQRLSIERCPKLKGHLPEQLCHLNSLKISGCEQLVPSALSAPDIHKLYLGDCGELQIDHGTTLKELTIEGHNVEAALFEEIGRNYSCSNNNIP |
| superfamily: SSF52058 | 953-1188 | SSF52058,LRR | SCSNNNIPMHSCYDFLVSLRIKGGCDSLTTFPLDMFTILRELCIWKCPNLRRISQGQAHNHLQTLDIKECPQLESLPEGMHVLLPSLDSLCIDDCPKVEMFPEGGLPSNLKEMGLFGGSYKLMSLLKSALGGNHSLERLVIGKVDFECLPEEGVLPHSLVSLQINSCGDLKRLDYKGICHLSSLKELSLEDCPRLQCLPEEGLPKSISSLWIWGDCQLLKERCREPEGEDWPKIAH |
| Gene3D: G3DSA:3.80.10.10 | 1000-1163 | G3DSA:3.80.10.10 | PNLRRISQGQAHNHLQTLDIKECPQLESLPEGMHVLLPSLDSLCIDDCPKVEMFPEGGLPSNLKEMGLFGGSYKLMSLLKSALGGNHSLERLVIGKVDFECLPEEGVLPHSLVSLQINSCGDLKRLDYKGICHLSSLKELSLEDCPRLQCLPEEGLPKSISSLW |
List of References
Tom Ashfield, Laura E Ong, Kan Nobuta, Christopher M Schneider, Roger W Innes
Convergent evolution of disease resistance gene specificity in two flowering plant families.
Plant Cell: 2004, 16(2);309-18
PubMed:14742871
WorldCat.org
DOI
(P p)
List of Contributions
There has not been any contribution yet.
