PRGDB00047496 (At2g03100)

At2g03100
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	20197340 (AC005313)
Gene Class	T
Domain Type	TIR, LRR
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana chromosome 2 clone T18E12 map CIC11A04, complete sequence.

DNA Sequence

ATGACATTCTTCTCTCCCACTCAGGTGTTTTTGAACTACAGGGGAGAACAACTGCGTCGCAGCTTCGTGAGCCACCTCATTGATGCCTTTGAAAGGAATGAGATCAACTTCTTCGTAGACAAATACGAACAGAGAGGCAAAGACCTCAAAAATCTCTTTCTTAGGATCCAAGAGTCGAAGATCGCGCTTGCCATCTTCTCAACCAGATACACGGAGTCAAGCTGGTGTATGGATGAGTTGGTGAAGATAAAGAAACTTGCTGATAAAAGAAAGCTCCATGTCATTCCAATTTTCTACAAGGTGAAGGTAGAAGACGTTCGAAAACAGACAGGTGAGTTTGGTGACAACTTCTGGACGCTGGCAAAGGTTTCAAGTGGTGATCAGATCAAGAAATGGAAAGAAGCCTTGGAATGTATCCCCAACAAGATGGGTTTGTCGTTGGGAGACAAGAGTGATGAAGCAGATTTCATCAAGGAAGTTGTTAAGGCGGTTCAGTGTGTTGTAGCAACGATTGGACTTGAGGAAGAAGAGAATCATTTTGGGAAAAAGAAGAGAAAGGATTGCAAATGTGAGCTTCCTGATTTGAAGAAAAGCAGAACCAAAAAGTTGTGA

Protein sequences

Name	Description	Sequence
disease resistance protein (TIR class), putative	disease resistance protein (TIR class), putative [Arabidopsis thaliana].	MTFFSPTQVFLNYRGEQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCMDELVKIKKLADKRKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIPNKMGLSLGDKSDEADFIKEVVKAVQCVVATIGLEEEENHFGKKKRKDCKCELPDLKKSRTKKL

Domains

Domain	Start-End	Description	Sequence
ProfileScan: PS50104 IPR000157	5-142	TIR Toll/interleukin-1 receptor homology (TIR) domain	SPTQVFLNYRGEQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCMDELVKIKKLADKRKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIPNK
HMMSmart: SM00255 IPR000157	6-142	TIR Toll/interleukin-1 receptor homology (TIR) domain	PTQVFLNYRGEQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCMDELVKIKKLADKRKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIPNK
superfamily: SSF52200 IPR000157	8-145	TIR Toll/interleukin-1 receptor homology (TIR) domain	QVFLNYRGEQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCMDELVKIKKLADKRKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIPNKMGL
Gene3D: G3DSA:3.40.50.10140	8-140	G3DSA:3.40.50.10140	QVFLNYRGEQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCMDELVKIKKLADKRKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIP
HMMPfam: PF01582 IPR000157	9-137	TIR Toll/interleukin-1 receptor homology (TIR) domain	VFLNYRGEQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCMDELVKIKKLADKRKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALE
HMMPanther: PTHR23155	16-185	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	EQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCMDELVKIKKLADKRKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIPNKMGLSLGDKSDEADFIKEVVKAVQCVVATIGLEEEENHFGKKKR
HMMPanther: PTHR23155:SF48	16-185	PTHR23155:SF48,SUBFAMILY NOT NAMED	EQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCMDELVKIKKLADKRKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIPNKMGLSLGDKSDEADFIKEVVKAVQCVVATIGLEEEENHFGKKKR

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Analyses

Blast

Blast matches against Reference R-Genes. Show