PRGDB00047522 (OSJNBa0079L16.20)

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OSJNBa0079L16.20
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 10716598 (AC026815)
Gene Class Unknown
Domain Type LRR, LRR, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa chromosome 10 BAC OSJNBa0079L16 genomic sequence, complete sequence.

DNA Sequence

CCGGTGAAAGCTAGGGTTTTCGCCGCGTTTGCGTCCGGCGACGGCGATGGAGGAGGCGAAGCCCTGGGCGGCTCTCGGGCGGAGGTAGACGGGGCGGAGGCGGTCTCTTTTGCCGTTGGCGGCATAGCTCGAGCGCATGGAATGGAGGTCGAGCTTGTCGTCGGCTTGGTTTGTTGGCGCGGCAAAGCTTGGGATGAAGCAGAGGCAGAGCTACTATTGCGTGGCTCGGCAAGGCGATGGAGAGCGGCCGAGCAGAGCTGCAGAGGAGACAGCGAATTTGGATCAGAATTCAGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGGACCAGGCCAGGAGGAGATCACATCAAGGTGTAGTTAGTATATTTTAATAATAGAGTACTATCCTAAGCTTGCCCCTGGCGTTAATCTAACAATGCATCTTAGCTGTGAAATTCCAACCGTTCCCGACGGCGCAACGGGTGACCTGGAGTCGCTCCAGCGAGCCATGGCGATCTTGCCAGTAAAAGAGAGGATGGCACGCCTCGTCCTCCCTCTGCTGATCATCCTCGTGGCGGCGGCTGCTGCCATCCCTGCGCTGGCCAATGCGGCGACGCCGACGGAAGCGGAGGCGCTGCTGGCGTGGAAGGCCAGCCTGCAGGACGACGCGGCCGCGCTGTCCGGGTGGAGCCGCGCCGCGCCGGTGTGCGCGTGGCGCGGCGTGGCCTGCGACGCCTCCGCCGCCGCCGGCGCCCGCGTCGCGAAGCTGCGGCTCCAGGGGCTGGGGCTCGGCGGCGGCCTCGACGAGCTCGACTTCGCGGCGCTCCCGGCGCTGGCCGAGCTCGACCTCAACGGGAACAACTTCACCGGCGCCATCCCCGCGAGCATCACGCGGCTGCGCTCGCTGACCTCGCTCGACCTCGGCAATAATGGCTTCAGCGACTCCATCCCGCCGCAGTTCGGCGACCTCTCCGGCCTCGTCGACCTCCGCCTCTACAACAACAACCTCGTCGGCGCCATCCCGCACCAGCTAAGCCGTCTCCCCAATATTATCCATTTTGACCTGGGAGCAAACTACCTGACCGACCAGGACTTCGGCAAGTTCTCGCCGATGCCCACCGTCACGTTCATGTCGCTCTACCTCAACTCCTTCAATGGCAGCTTCCCGGAGTTCGTCCTCAGGAGCGGCAACATCACCTACCTCGACCTGTCGCAGAATACTCTGTTCGGGAAGATACCGGACACGCTGCCGGAGAAGCTCCCGAATCTGAGGTACCTCAACCTGTCCATCAATGCGTTCTCCGGCTCGATTCCGGCGTCGCTCGGGAAGTTGATGAAGCTGCAGGACCTGCGGATGGCCGGCAACAATCTCACCGGCGGCATCCCGGAGTTCCTTGGGTCGATGCCGCAATTGAGGATTCTTGAACTCGGCGACAACCAGCTCGGCGGGGCGATCCCGCCGGTTCTTGGCCGGCTCCAGATGCTGCAGCGGCTCGACATCAAGAACTCCGGCCTTGTCTCAACTCTGCCGTCGCAGCTGGGAAATCTGAAGAATCTCATTTTCTTCGAGCTGTCCTTGAACCGGCTCTCCGGTGGCTTGCCGCCGGAGTTCGCCGGGATGCGGGCAATGCGGTACTTCGGCATTTCCACGAACAACCTCACCGGTGAGATCCCGCCGGCGTTGTTCACGAGCTGGCCGGAGCTCATAGTGTTCCAAGTGCAGAACAACTCGTTGACCGGCAAAATTCCATCGGAGCTCAGCAAGGCAAGGAAACTGGAATTCCTTTACCTATTCAGCAACAACCTTAGCGGTTCCATCCCGGTAGAGCTCGGCGAGCTGGAGAACCTGGTAGAGCTAGATTTGTCGGAGAACTCGCTCACCGGACCGATCCCCAGCTCGCTCGGCAAGCTCAAGCAACTCACTAAGTTGGCGTTGTTCTTCAACAACCTCACCGGTACGATCCCACCTGAGATTGGCAACATGACAGCGTTGCAAAGCTTCGACGTGAACACCAACCGTCTGCAAGGTGAGCTCCCTGCCACCATCTCGTCCCTCAGGAACCTTCAGTACCTCTCCGTGTTCAACAACTACATGAGCGGCACCATTCCGCCGGACCTCGGCAAGGGCATAGCCTTGCAGCACGTGAGCTTCACCAACAACAGCTTCTCCGGCGAGCTGCCGCGCCACATCTGCGACGGCTTCGCGCTGGACCAACTCACGGCGAACTACAACAACTTCACCGGCACGCTGCCGTTGTGCCTGAAGAATTGCACGGCGCTATACCGGGTCCGGCTGGAAGAGAACCACTTCACCGGCGACATCTCGGAGGCCTTCGGCGTCCACCGCATCCTGCAATATTTGGACGTCTCCGGGAACAAGCTTACCGGTGAGCTGTCCTCTGACTGGGGACAGTGCACCAACCTCACCTATCTGTCTATCAATGGTAACAGCATATCCGGCAACCTTGATTCGACCTTTTGTAAATTGTCATCTCTTCAGTTTTTGGATCTATCGAATAACCGATTCAATGGTGAGCTCCCAAGTTGTTGGTGGGAGTTGCAAGCTTTACTGTTTATGGACATCTCCGGCAACGACTTTTATGGTGAATTGCCAGCAACAGAAAGCCTTGAACTTCCTCTACAATCGATGCATCTCGCTAACAATAGTTTCTCTGGAGTTTTCCCAAATATTGTTCGCAAATGTGGAGCGCTTGTTACCCTAGATATGGGGAACAACAAGTTCTTTGGCCATATTCCCTCTTGGATTGGAATTAGTCTTCCTCTCCTAAGAATTCTTATCCTTCGATCAAATAATTTCAGTGGAGAGATTCCTACAGAATTATCCCAACTTTCTGAGCTTCAACTTCTTGACTTGGCCAGCAACGTGTTAACTGGATTCATCCCAACAAGTTTTGGCAACTTATCATCCATGACACAAGCAAAAACCTTGCCAGCGACAGAATATTTTAACGCGGAAAGCAGTCCTTTTCAGCCAGAAGTACCCCAGGTTCCCAAGCCTCACCGCAGAAGAGAACCCAAAAATCAGTCCCCTCTTGATCAGTCTAGAGACAGAGTTAGCATACAATGGAAGGGACATGAAGAAACTTTTCAAAGAACAGCTATGTTAATGACAGGCATTGATTTATCAGGCAATTCACTTTACGGTGAAATCCCAAAAGAGCTAACATACCTTCGGGGCCTCCGGTTTTTGAACTTGTCATGGAACGATCTATCAGGCAGTATTCCAGAAAGAATTGGCAATTTGAATATCTTGGAGTCCCTTGACTTGTCATGGAATGAGCTTTCAG


Protein sequences

Name Description Sequence
putative disease resistance protein putative disease resistance protein [Oryza sativa].

MARLVLPLLIILVAAAAAIPALANAATPTEAEALLAWKASLQDDAAALSGWSRAAPVCAWRGVACDASAAAGARVAKLRLQGLGLGGGLDELDFAALPALAELDLNGNNFTGAIPASITRLRSLTSLDLGNNGFSDSIPPQFGDLSGLVDLRLYNNNLVGAIPHQLSRLPNIIHFDLGANYLTDQDFGKFSPMPTVTFMSLYLNSFNGSFPEFVLRSGNITYLDLSQNTLFGKIPDTLPEKLPNLRYLNLSINAFSGSIPASLGKLMKLQDLRMAGNNLTGGIPEFLGSMPQLRILELGDNQLGGAIPPVLGRLQMLQRLDIKNSGLVSTLPSQLGNLKNLIFFELSLNRLSGGLPPEFAGMRAMRYFGISTNNLTGEIPPALFTSWPELIVFQVQNNSLTGKIPSELSKARKLEFLYLFSNNLSGSIPVELGELENLVELDLSENSLTGPIPSSLGKLKQLTKLALFFNNLTGTIPPEIGNMTALQSFDVNTNRLQGELPATISSLRNLQYLSVFNNYMSGTIPPDLGKGIALQHVSFTNNSFSGELPRHICDGFALDQLTANYNNFTGTLPLCLKNCTALYRVRLEENHFTGDISEAFGVHRILQYLDVSGNKLTGELSSDWGQCTNLTYLSINGNSISGNLDSTFCKLSSLQFLDLSNNRFNGELPSCWWELQALLFMDISGNDFYGELPATESLELPLQSMHLANNSFSGVFPNIVRKCGALVTLDMGNNKFFGHIPSWIGISLPLLRILILRSNNFSGEIPTELSQLSELQLLDLASNVLTGFIPTSFGNLSSMTQAKTLPATEYFNAESSPFQPEVPQVPKPHRRREPKNQSPLDQSRDRVSIQWKGHEETFQRTAMLMTGIDLSGNSLYGEIPKELTYLRGLRFLNLSWNDLSGSIPERIGNLNILESLDLSWNELSVIEYYPKLAPGVNLTMHLSCEIPTVPDGATGDLESLQRAMAILPVKERPVKARVFAAFASGDGDGGGEALGGSRAEVDGAEAVSFAVGGIARAHGMEVELVVGLVCWRGKAWDEAEAELLLRGSARRWRAAEQSCRGDSEFGSEFSREREREREREREREREDQARRRSHQGVVSIF


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR24420
1-924 PTHR24420,FAMILY NOT NAMED

MARLVLPLLIILVAAAAAIPALANAATPTEAEALLAWKASLQDDAAALSGWSRAAPVCAWRGVACDASAAAGARVAKLRLQGLGLGGGLDELDFAALPALAELDLNGNNFTGAIPASITRLRSLTSLDLGNNGFSDSIPPQFGDLSGLVDLRLYNNNLVGAIPHQLSRLPNIIHFDLGANYLTDQDFGKFSPMPTVTFMSLYLNSFNGSFPEFVLRSGNITYLDLSQNTLFGKIPDTLPEKLPNLRYLNLSINAFSGSIPASLGKLMKLQDLRMAGNNLTGGIPEFLGSMPQLRILELGDNQLGGAIPPVLGRLQMLQRLDIKNSGLVSTLPSQLGNLKNLIFFELSLNRLSGGLPPEFAGMRAMRYFGISTNNLTGEIPPALFTSWPELIVFQVQNNSLTGKIPSELSKARKLEFLYLFSNNLSGSIPVELGELENLVELDLSENSLTGPIPSSLGKLKQLTKLALFFNNLTGTIPPEIGNMTALQSFDVNTNRLQGELPATISSLRNLQYLSVFNNYMSGTIPPDLGKGIALQHVSFTNNSFSGELPRHICDGFALDQLTANYNNFTGTLPLCLKNCTALYRVRLEENHFTGDISEAFGVHRILQYLDVSGNKLTGELSSDWGQCTNLTYLSINGNSISGNLDSTFCKLSSLQFLDLSNNRFNGELPSCWWELQALLFMDISGNDFYGELPATESLELPLQSMHLANNSFSGVFPNIVRKCGALVTLDMGNNKFFGHIPSWIGISLPLLRILILRSNNFSGEIPTELSQLSELQLLDLASNVLTGFIPTSFGNLSSMTQAKTLPATEYFNAESSPFQPEVPQVPKPHRRREPKNQSPLDQSRDRVSIQWKGHEETFQRTAMLMTGIDLSGNSLYGEIPKELTYLRGLRFLNLSWNDLSGSIPERIGNLNILESLDLSWNELS

HMMPanther: PTHR24420:SF505
1-924 PTHR24420:SF505

MARLVLPLLIILVAAAAAIPALANAATPTEAEALLAWKASLQDDAAALSGWSRAAPVCAWRGVACDASAAAGARVAKLRLQGLGLGGGLDELDFAALPALAELDLNGNNFTGAIPASITRLRSLTSLDLGNNGFSDSIPPQFGDLSGLVDLRLYNNNLVGAIPHQLSRLPNIIHFDLGANYLTDQDFGKFSPMPTVTFMSLYLNSFNGSFPEFVLRSGNITYLDLSQNTLFGKIPDTLPEKLPNLRYLNLSINAFSGSIPASLGKLMKLQDLRMAGNNLTGGIPEFLGSMPQLRILELGDNQLGGAIPPVLGRLQMLQRLDIKNSGLVSTLPSQLGNLKNLIFFELSLNRLSGGLPPEFAGMRAMRYFGISTNNLTGEIPPALFTSWPELIVFQVQNNSLTGKIPSELSKARKLEFLYLFSNNLSGSIPVELGELENLVELDLSENSLTGPIPSSLGKLKQLTKLALFFNNLTGTIPPEIGNMTALQSFDVNTNRLQGELPATISSLRNLQYLSVFNNYMSGTIPPDLGKGIALQHVSFTNNSFSGELPRHICDGFALDQLTANYNNFTGTLPLCLKNCTALYRVRLEENHFTGDISEAFGVHRILQYLDVSGNKLTGELSSDWGQCTNLTYLSINGNSISGNLDSTFCKLSSLQFLDLSNNRFNGELPSCWWELQALLFMDISGNDFYGELPATESLELPLQSMHLANNSFSGVFPNIVRKCGALVTLDMGNNKFFGHIPSWIGISLPLLRILILRSNNFSGEIPTELSQLSELQLLDLASNVLTGFIPTSFGNLSSMTQAKTLPATEYFNAESSPFQPEVPQVPKPHRRREPKNQSPLDQSRDRVSIQWKGHEETFQRTAMLMTGIDLSGNSLYGEIPKELTYLRGLRFLNLSWNDLSGSIPERIGNLNILESLDLSWNELS

HMMPfam: PF08263
IPR013210
29-66 LRRNT_2
Leucine-rich repeat-containing N-terminal, type 2

TEAEALLAWKASLQDDAAALSGWSRAAPVCAWRGVACD

superfamily: SSF52058
48-280 SSF52058,LRR

LSGWSRAAPVCAWRGVACDASAAAGARVAKLRLQGLGLGGGLDELDFAALPALAELDLNGNNFTGAIPASITRLRSLTSLDLGNNGFSDSIPPQFGDLSGLVDLRLYNNNLVGAIPHQLSRLPNIIHFDLGANYLTDQDFGKFSPMPTVTFMSLYLNSFNGSFPEFVLRSGNITYLDLSQNTLFGKIPDTLPEKLPNLRYLNLSINAFSGSIPASLGKLMKLQDLRMAGNNLT

Gene3D: G3DSA:3.80.10.10
58-227 G3DSA:3.80.10.10

CAWRGVACDASAAAGARVAKLRLQGLGLGGGLDELDFAALPALAELDLNGNNFTGAIPASITRLRSLTSLDLGNNGFSDSIPPQFGDLSGLVDLRLYNNNLVGAIPHQLSRLPNIIHFDLGANYLTDQDFGKFSPMPTVTFMSLYLNSFNGSFPEFVLRSGNITYLDLSQ

ProfileScan: PS51450
IPR001611
99-121 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

ALAELDLNGNNFTGAIPASITRL

HMMPfam: PF12799
100-136 LRR_4,Leucine Rich repeats (2 copies)

LAELDLNGNNFTGAIPASITRLRSLTSLDLGNNGFSD

ProfileScan: PS51450
IPR001611
123-145 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

SLTSLDLGNNGFSDSIPPQFGDL

superfamily: SSF52058
218-565 SSF52058,LRR

GNITYLDLSQNTLFGKIPDTLPEKLPNLRYLNLSINAFSGSIPASLGKLMKLQDLRMAGNNLTGGIPEFLGSMPQLRILELGDNQLGGAIPPVLGRLQMLQRLDIKNSGLVSTLPSQLGNLKNLIFFELSLNRLSGGLPPEFAGMRAMRYFGISTNNLTGEIPPALFTSWPELIVFQVQNNSLTGKIPSELSKARKLEFLYLFSNNLSGSIPVELGELENLVELDLSENSLTGPIPSSLGKLKQLTKLALFFNNLTGTIPPEIGNMTALQSFDVNTNRLQGELPATISSLRNLQYLSVFNNYMSGTIPPDLGKGIALQHVSFTNNSFSGELPRHICDGFALDQLTANY

ProfileScan: PS51450
IPR001611
219-241 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

NITYLDLSQNTLFGKIPDTLPEK

HMMPfam: PF13855
219-279 LRR_8,Leucine rich repeat

NITYLDLSQNTLFGKIPDTLPEKLPNLRYLNLSINAFSGSIPASLGKLMKLQDLRMAGNNL

Gene3D: G3DSA:3.80.10.10
228-384 G3DSA:3.80.10.10

NTLFGKIPDTLPEKLPNLRYLNLSINAFSGSIPASLGKLMKLQDLRMAGNNLTGGIPEFLGSMPQLRILELGDNQLGGAIPPVLGRLQMLQRLDIKNSGLVSTLPSQLGNLKNLIFFELSLNRLSGGLPPEFAGMRAMRYFGISTNNLTGEIPPALF

ProfileScan: PS51450
IPR001611
244-267 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

NLRYLNLSINAFSGSIPASLGKLM

ProfileScan: PS51450
IPR001611
268-290 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

KLQDLRMAGNNLTGGIPEFLGSM

ProfileScan: PS51450
IPR001611
292-314 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

QLRILELGDNQLGGAIPPVLGRL

Gene3D: G3DSA:3.80.10.10
385-612 G3DSA:3.80.10.10

TSWPELIVFQVQNNSLTGKIPSELSKARKLEFLYLFSNNLSGSIPVELGELENLVELDLSENSLTGPIPSSLGKLKQLTKLALFFNNLTGTIPPEIGNMTALQSFDVNTNRLQGELPATISSLRNLQYLSVFNNYMSGTIPPDLGKGIALQHVSFTNNSFSGELPRHICDGFALDQLTANYNNFTGTLPLCLKNCTALYRVRLEENHFTGDISEAFGVHRILQYLDVS

ProfileScan: PS51450
IPR001611
413-436 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

KLEFLYLFSNNLSGSIPVELGELE

HMMPfam: PF00560
IPR001611
413-435 LRR_1
Leucine-rich repeat

KLEFLYLFSNNLSGSIPVELGEL

ProfileScan: PS51450
IPR001611
437-460 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

NLVELDLSENSLTGPIPSSLGKLK

HMMPfam: PF00560
IPR001611
437-459 LRR_1
Leucine-rich repeat

NLVELDLSENSLTGPIPSSLGKL

ProfileScan: PS51450
IPR001611
461-483 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

QLTKLALFFNNLTGTIPPEIGNM

superfamily: SSF52058
566-961 SSF52058,LRR

NNFTGTLPLCLKNCTALYRVRLEENHFTGDISEAFGVHRILQYLDVSGNKLTGELSSDWGQCTNLTYLSINGNSISGNLDSTFCKLSSLQFLDLSNNRFNGELPSCWWELQALLFMDISGNDFYGELPATESLELPLQSMHLANNSFSGVFPNIVRKCGALVTLDMGNNKFFGHIPSWIGISLPLLRILILRSNNFSGEIPTELSQLSELQLLDLASNVLTGFIPTSFGNLSSMTQAKTLPATEYFNAESSPFQPEVPQVPKPHRRREPKNQSPLDQSRDRVSIQWKGHEETFQRTAMLMTGIDLSGNSLYGEIPKELTYLRGLRFLNLSWNDLSGSIPERIGNLNILESLDLSWNELSVIEYYPKLAPGVNLTMHLSCEIPTVPDGATGDLESLQ

ProfileScan: PS51450
IPR001611
605-627 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

ILQYLDVSGNKLTGELSSDWGQC

HMMPfam: PF13855
606-664 LRR_8,Leucine rich repeat

LQYLDVSGNKLTGELSSDWGQCTNLTYLSINGNSISGNLDSTFCKLSSLQFLDLSNNRF

Gene3D: G3DSA:3.80.10.10
613-801 G3DSA:3.80.10.10

GNKLTGELSSDWGQCTNLTYLSINGNSISGNLDSTFCKLSSLQFLDLSNNRFNGELPSCWWELQALLFMDISGNDFYGELPATESLELPLQSMHLANNSFSGVFPNIVRKCGALVTLDMGNNKFFGHIPSWIGISLPLLRILILRSNNFSGEIPTELSQLSELQLLDLASNVLTGFIPTSFGNLSSMTQ

ProfileScan: PS51450
IPR001611
629-650 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

NLTYLSINGNSISGNLDSTFCK

ProfileScan: PS51450
IPR001611
653-675 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

SLQFLDLSNNRFNGELPSCWWEL

ProfileScan: PS51450
IPR001611
750-772 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

LLRILILRSNNFSGEIPTELSQL

ProfileScan: PS51450
IPR001611
774-795 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

ELQLLDLASNVLTGFIPTSFGN

Gene3D: G3DSA:3.80.10.10
851-925 G3DSA:3.80.10.10

WKGHEETFQRTAMLMTGIDLSGNSLYGEIPKELTYLRGLRFLNLSWNDLSGSIPERIGNLNILESLDLSWNELSV

ProfileScan: PS51450
IPR001611
888-911 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

GLRFLNLSWNDLSGSIPERIGNLN

HMMPfam: PF00560
IPR001611
889-910 LRR_1
Leucine-rich repeat

LRFLNLSWNDLSGSIPERIGNL

ProfileScan: PS51450
IPR001611
912-933 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

ILESLDLSWNELSVIEYYPKLA






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


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