PRGDB00047535 (F3N23.36)

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F3N23.36
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 5487890 (AC008017)
Gene Class TNL
Domain Type TIR, NBS, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence.

DNA Sequence

ATGTCTTCTCATACTGCAACTAAGTACGATGTTTTCCTAAGTTTCAGAGGGCATGACACTCGCCAGAACTTCATCAGTTTTCTCTACAAAGAACTGGTTCGAAGGAGCATTCGAACCTTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGATTTCGTCGGAGCTCAAACGCACCATCGAGGTGTCAAGATTCGCCGTCGTTGTTGTCTCAGAGACCTATGCTGCGTCTTCTTGGTGTCTCGATGAGCTCGTAACGATCATGGATTTCGAAAAAAAGGGTTCCATCACCGTGATGCCCATCTTCTACGGCGTGGAACCGAATCATGTGAGGTGGCAGACCGGAGTACTCGCTGAACAGTTTAAGAAACATGGGAGTAGAGAAGATCATGAGAAAGTGCTTAAATGGAGGCAAGCATTGACCAATTTTGCGCAACTCTCCGGCGATTGTTCAGGTGATGATGACTCGAAGCTGGTGGACAAAATTGCTAACGAGATATCAAACAAGAAGACGATTTATGCAACAATAAACAATGGGAAGAATCTAGTTGGGATTGATACACACATGAAGGAACTAAACCGATTAATGCATATGAATTGCAACAAAGTTACTGTAAGAATGGTTGGGATTTGGGCAAGAGGAGGCGATGGTAGATCAGCTCTAGCTAAATATGTTTATCAGACATCTTGTCAACAGTTTGACAGCCATTGTTTTCTTGGAAACGTGAAAACGATTTCTCAGGGTCGCCACTCAGCGCATCTACACGACGAGTTTCTGAGAAATATTAAAAGAGAAGACTCTAACAAACAATGTCTTAAGAATCAAAAGGTTCTGCTTGTGGCAGACAACGTTACTAAGGTTAAACAGTTAGAAGCTCTTGCAGGGGATTTCAGCAGTTTTGGTCCTGGGAGTGTTGTTATTATCACTACAGACAACAAGGGGTTGTTGAATTCTTATGGTATAACAGATGTCTACGAAGTTGAGCATTTGAAGTTTTGTGGAATCTTACGATCATTGGGCTTTAAAAAGAGAGCTGCTGCGTTCCAGCGGGCTTTGTGTAGAGCAAAGAGTTTTGCCACGGAATGTTTTTGTTGTCAAAGTAGTAGTATATCTGGTTATGGGAAAGTGACAGATTTAGTTTAA


Protein sequences

Name Description Sequence
Similar to part of disease resistance protein Similar to part of disease resistance protein [Arabidopsis thaliana].

MSSHTATKYDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAVVVVSETYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHGSREDHEKVLKWRQALTNFAQLSGDCSGDDDSKLVDKIANEISNKKTIYATINNGKNLVGIDTHMKELNRLMHMNCNKVTVRMVGIWARGGDGRSALAKYVYQTSCQQFDSHCFLGNVKTISQGRHSAHLHDEFLRNIKREDSNKQCLKNQKVLLVADNVTKVKQLEALAGDFSSFGPGSVVIITTDNKGLLNSYGITDVYEVEHLKFCGILRSLGFKKRAAAFQRALCRAKSFATECFCCQSSSISGYGKVTDLV

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
2-148 TIR
Toll/interleukin-1 receptor homology (TIR) domain

SSHTATKYDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAVVVVSETYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHGSREDHEKVLKWRQALTNFAQLSG

Gene3D: G3DSA:3.40.50.10140
6-142 G3DSA:3.40.50.10140

ATKYDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAVVVVSETYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHGSREDHEKVLKWRQALTN

ProfileScan: PS50104
IPR000157
7-146 TIR
Toll/interleukin-1 receptor homology (TIR) domain

TKYDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAVVVVSETYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHGSREDHEKVLKWRQALTNFAQL

HMMSmart: SM00255
IPR000157
8-146 TIR
Toll/interleukin-1 receptor homology (TIR) domain

KYDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAVVVVSETYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHGSREDHEKVLKWRQALTNFAQL

HMMPfam: PF01582
IPR000157
11-141 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAVVVVSETYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHGSREDHEKVLKWRQALT

HMMPanther: PTHR23155:SF344
20-294 PTHR23155:SF344

TRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAVVVVSETYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHGSREDHEKVLKWRQALTNFAQLSGDCSGDDDSKLVDKIANEISNKKTIYATINNGKNLVGIDTHMKELNRLMHMNCNKVTVRMVGIWARGGDGRSALAKYVYQTSCQQFDSHCFLGNVKTISQGRHSAHLHDEFLRNIKREDSNKQCLKNQKVLLVADNVTKVKQLEALA

HMMPanther: PTHR23155
20-294 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

TRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAVVVVSETYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHGSREDHEKVLKWRQALTNFAQLSGDCSGDDDSKLVDKIANEISNKKTIYATINNGKNLVGIDTHMKELNRLMHMNCNKVTVRMVGIWARGGDGRSALAKYVYQTSCQQFDSHCFLGNVKTISQGRHSAHLHDEFLRNIKREDSNKQCLKNQKVLLVADNVTKVKQLEALA

superfamily: SSF52540
165-337 SSF52540

EISNKKTIYATINNGKNLVGIDTHMKELNRLMHMNCNKVTVRMVGIWARGGDGRSALAKYVYQTSCQQFDSHCFLGNVKTISQGRHSAHLHDEFLRNIKREDSNKQCLKNQKVLLVADNVTKVKQLEALAGDFSSFGPGSVVIITTDNKGLLNSYGITDVYEVEHLKFCGILR

HMMPfam: PF00931
IPR002182
192-331 NB-ARC,NBS
NB-ARC

LNRLMHMNCNKVTVRMVGIWARGGDGRSALAKYVYQTSCQQFDSHCFLGNVKTISQGRHSAHLHDEFLRNIKREDSNKQCLKNQKVLLVADNVTKVKQLEALAGDFSSFGPGSVVIITTDNKGLLNSYGITDVYEVEHLK






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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