PRGDB00047542 (At2g03090)

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At2g03090
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 20197094 (AC004138)
Gene Class T
Domain Type TIR, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana chromosome 2 clone T17M13 map CIC11A04, complete sequence.

DNA Sequence

ATGACATTCTTCTCTCCCACTCAGGTGTTTTTGAACTACAGGGGAGAACAACTGCGTCGCAGCTTCGTGAGCCACCTCATTGATGCCTTTGAAAGGAATGAGATCAACTTCTTCGTAGACAAATACGAACAGAGAGGCAAAGACCTCAAAAATCTCTTTCTTAGGATCCAAGAGTCGAAGATCGCGCTTGCCATCTTCTCAACCAGATACACGGAGTCAAGCTGGTGTTTGGATGAGTTGGTGAAGATAAAGAAACTTGCTGATAAAAAAAAACTCCATGTCATTCCAATTTTCTACAAGGTGAAGGTAGAAGACGTTCGAAAACAGACAGGTGAGTTTGGTGACAACTTCTGGACGCTGGCAAAGGTTTCAAGTGGTGATCAGATCAAGAAATGGAAAGAAGCCTTGGAATGTATCCCCAACAAGATGGGTTTGTCGTTGGGAGACAAGAGTTCTGAAGCAGATTTCATCAAGGAAGTTGTTAAGGCGGTTCAGTGTGTTGTAGCAACGATTGGACTTGAGGAAGAAGAAGAGAATCATTTTGGGAAAAAGAAGAGAAAGGATTGCAAATGTGAGCTTCCTGATTTGAAGAAAAGCAGAACCAAAAAGTTGTGA


Protein sequences

Name Description Sequence
disease resistance protein (TIR class), putative disease resistance protein (TIR class), putative [Arabidopsis thaliana].

MTFFSPTQVFLNYRGEQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCLDELVKIKKLADKKKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIPNKMGLSLGDKSSEADFIKEVVKAVQCVVATIGLEEEEENHFGKKKRKDCKCELPDLKKSRTKKL

Domains

Domain Start-End Description Sequence

ProfileScan: PS50104
IPR000157
5-142 TIR
Toll/interleukin-1 receptor homology (TIR) domain

SPTQVFLNYRGEQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCLDELVKIKKLADKKKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIPNK

HMMSmart: SM00255
IPR000157
6-142 TIR
Toll/interleukin-1 receptor homology (TIR) domain

PTQVFLNYRGEQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCLDELVKIKKLADKKKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIPNK

superfamily: SSF52200
IPR000157
8-145 TIR
Toll/interleukin-1 receptor homology (TIR) domain

QVFLNYRGEQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCLDELVKIKKLADKKKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIPNKMGL

Gene3D: G3DSA:3.40.50.10140
8-140 G3DSA:3.40.50.10140

QVFLNYRGEQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCLDELVKIKKLADKKKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIP

HMMPfam: PF01582
IPR000157
9-137 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLNYRGEQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCLDELVKIKKLADKKKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALE

HMMPanther: PTHR23155:SF48
16-186 PTHR23155:SF48,SUBFAMILY NOT NAMED

EQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCLDELVKIKKLADKKKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIPNKMGLSLGDKSSEADFIKEVVKAVQCVVATIGLEEEEENHFGKKKR

HMMPanther: PTHR23155
16-186 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

EQLRRSFVSHLIDAFERNEINFFVDKYEQRGKDLKNLFLRIQESKIALAIFSTRYTESSWCLDELVKIKKLADKKKLHVIPIFYKVKVEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIPNKMGLSLGDKSSEADFIKEVVKAVQCVVATIGLEEEEENHFGKKKR






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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