PRGDB00047543 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 40644896 (AJ581791)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Pyrus communis

Comment?

Pyrus communis partial gene for putative nucleotide binding site leucine-rich repeat disease resistance protein, clone RGA04.

DNA Sequence

ATGGGTGGCGTAGGTAAAACGACACTTGCTCAACTTGTATTCAACAACAAAGATGATGCCATGAAGGATTTTGAGCTCAAGGTCTGGGTATCTGTGTCCGATGACTTTGATGTGGTGCGAGTGACAAAGGCAATTCTTGAATCAATCACATCCCGACCCGTTCAAGTGGAGGAGTTTAGTAAAATGCAGCATGATTTGAGTGAGCAATTAAGAGGAAAAAAGTTTTTAATTGTTTTAGATGATATCTGGGACAAAGATGGCTCTGATCTATACGATCTCTGGACAAGACTTCAATCCCCTTTTGGCGTCGGAGCAGGAGGAAGCAAGATAATTGTGACAACCCGTGACAGGAATGTTGCAAAGCTTACGGGAGCCGCTGGAGTTCATAATTTGGAGTGTATGGCAGATGATGATTGTATGGAAATATTTGAGCAACACGCGTTCGGGGAAATTAATAACGGAAAACCAGTAAATTATGAGGTAATTCGGACGAAAATTGTTGGAAAATGTTGTGGATTACCATTAGCTGCAAGAACTCTCGGTTGTCTTCCCGACTCCTCCCATA


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus communis].

MGGVGKTTLAQLVFNNKDDAMKDFELKVWVSVSDDFDVVRVTKAILESITSRPVQVEEFSKMQHDLSEQLRGKKFLIVLDDIWDKDGSDLYDLWTRLQSPFGVGAGGSKIIVTTRDRNVAKLTGAAGVHNLECMADDDCMEIFEQHAFGEINNGKPVNYEVIRTKIVGKCCGLPLAARTLGCLPDSSH

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-186 SSF52540

MGGVGKTTLAQLVFNNKDDAMKDFELKVWVSVSDDFDVVRVTKAILESITSRPVQVEEFSKMQHDLSEQLRGKKFLIVLDDIWDKDGSDLYDLWTRLQSPFGVGAGGSKIIVTTRDRNVAKLTGAAGVHNLECMADDDCMEIFEQHAFGEINNGKPVNYEVIRTKIVGKCCGLPLAARTLGCLPDS

HMMPanther: PTHR11017
1-181 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MGGVGKTTLAQLVFNNKDDAMKDFELKVWVSVSDDFDVVRVTKAILESITSRPVQVEEFSKMQHDLSEQLRGKKFLIVLDDIWDKDGSDLYDLWTRLQSPFGVGAGGSKIIVTTRDRNVAKLTGAAGVHNLECMADDDCMEIFEQHAFGEINNGKPVNYEVIRTKIVGKCCGLPLAARTLG

HMMPfam: PF00931
IPR002182
1-182 NB-ARC,NBS
NB-ARC

MGGVGKTTLAQLVFNNKDDAMKDFELKVWVSVSDDFDVVRVTKAILESITSRPVQVEEFSKMQHDLSEQLRGKKFLIVLDDIWDKDGSDLYDLWTRLQSPFGVGAGGSKIIVTTRDRNVAKLTGAAGVHNLECMADDDCMEIFEQHAFGEINNGKPVNYEVIRTKIVGKCCGLPLAARTLGC

HMMPanther: PTHR11017:SF20
1-181 PTHR11017:SF20,SUBFAMILY NOT NAMED

MGGVGKTTLAQLVFNNKDDAMKDFELKVWVSVSDDFDVVRVTKAILESITSRPVQVEEFSKMQHDLSEQLRGKKFLIVLDDIWDKDGSDLYDLWTRLQSPFGVGAGGSKIIVTTRDRNVAKLTGAAGVHNLECMADDDCMEIFEQHAFGEINNGKPVNYEVIRTKIVGKCCGLPLAARTLG

Gene3D: G3DSA:3.40.50.300
3-115 G3DSA:3.40.50.300

GVGKTTLAQLVFNNKDDAMKDFELKVWVSVSDDFDVVRVTKAILESITSRPVQVEEFSKMQHDLSEQLRGKKFLIVLDDIWDKDGSDLYDLWTRLQSPFGVGAGGSKIIVTTR

FPrintScan: PR00364
IPR000767
69-83 DISEASERSIST
Disease resistance protein

QLRGKKFLIVLDDIW

FPrintScan: PR00364
IPR000767
170-184 DISEASERSIST
Disease resistance protein

CCGLPLAARTLGCLP






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Analyses

Blast

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