PRGDB00047548 (nucleotide binding site leucine-rich repeat disease resistance protein)

nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	40644879 (AJ581781)
Gene Class	N
Domain Type	NBS, Others
Gene Species	Pyrus communis
	Comment?

Pyrus communis partial gene for putative nucleotide binding site leucine-rich repeat disease resistance protein, clone RGA14.

DNA Sequence

TGTGGTGCGAGTGCAAAGGCAATTCTTGAATCAATCACATCCCGACCCGTTAAAGTGGAGGAGTTTAGTAAAATGCAGCATGATTTGAGTGAGCAATTAAGAGGAAAAAAGTTTTTAATTGTTTTAGATGATATTTGGGACAAAGATGACTATGATCTATACGATCTCTGGACAAGACTTCAATCCCCTTTTGGCGTCGGAGTAGGAGGAAGTAAGATAATTGTGACAACCCGTGACAGGAATGTTGCAAAGATTACGGGAGCCGCTGGAGTTCATAATTTGGAGTGTATGGCAGATGATGATTGTATGGAAATATTTGAGCGACACGCGTTCGGGGAAATTAATAACAGAAAACCAGTAAATTATGAGGTAATTCGGACGAAAATTGTTGGAAAATGTTGTGGATTACCATTAGCTGCAAAAACTCTCGGTAGTTTTTCCCACGCCTCCCAT

Protein sequences

Name	Description	Sequence
nucleotide binding site leucine-rich repeat disease resistance protein	nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus communis].	CGASAKAILESITSRPVKVEEFSKMQHDLSEQLRGKKFLIVLDDIWDKDDYDLYDLWTRLQSPFGVGVGGSKIIVTTRDRNVAKITGAAGVHNLECMADDDCMEIFERHAFGEINNRKPVNYEVIRTKIVGKCCGLPLAAKTLGSFSHASH

Domains

Domain	Start-End	Description	Sequence
HMMPfam: PF00931 IPR002182	9-145	NB-ARC,NBS NB-ARC	LESITSRPVKVEEFSKMQHDLSEQLRGKKFLIVLDDIWDKDDYDLYDLWTRLQSPFGVGVGGSKIIVTTRDRNVAKITGAAGVHNLECMADDDCMEIFERHAFGEINNRKPVNYEVIRTKIVGKCCGLPLAAKTLGS
superfamily: SSF52540	24-145	SSF52540	KMQHDLSEQLRGKKFLIVLDDIWDKDDYDLYDLWTRLQSPFGVGVGGSKIIVTTRDRNVAKITGAAGVHNLECMADDDCMEIFERHAFGEINNRKPVNYEVIRTKIVGKCCGLPLAAKTLGS
FPrintScan: PR00364 IPR000767	32-46	DISEASERSIST Disease resistance protein	QLRGKKFLIVLDDIW
FPrintScan: PR00364 IPR000767	133-147	DISEASERSIST Disease resistance protein	CCGLPLAAKTLGSFS

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Analyses

Blast

Blast matches against Reference R-Genes. Show